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Patent 2447057 Summary

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Claims and Abstract availability

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(12) Patent Application: (11) CA 2447057
(54) English Title: MASS SPECTROMETER
(54) French Title: SPECTROMETRE DE MASSE
Status: Dead
Bibliographic Data
(51) International Patent Classification (IPC):
  • H01J 49/26 (2006.01)
  • H01J 49/42 (2006.01)
(72) Inventors :
  • BATEMAN, ROBERT HAROLD (United Kingdom)
  • GILES, KEVIN (United Kingdom)
  • HOYES, JOHN BRIAN (United Kingdom)
  • PRINGLE, STEVE (United Kingdom)
  • WILDGOOSE, JASON LEE (United Kingdom)
(73) Owners :
  • MICROMASS UK LIMITED (United Kingdom)
(71) Applicants :
  • MICROMASS UK LIMITED (United Kingdom)
(74) Agent: RIDOUT & MAYBEE LLP
(74) Associate agent:
(45) Issued:
(22) Filed Date: 2003-10-28
(41) Open to Public Inspection: 2004-05-08
Availability of licence: N/A
(25) Language of filing: English

Patent Cooperation Treaty (PCT): No

(30) Application Priority Data:
Application No. Country/Territory Date
0226017.2 United Kingdom 2002-11-08

Abstracts

English Abstract



A mass spectrometer is disclosed comprising a mass
filter 1 for separating ions according to their mass to
charge ratio. The mass filter 1 comprises a plurality
of electrodes 3 wherein ions are radially confined
within the mass filter 1 by the application of AC or RF
voltages to the electrodes 3. One or more transient DC
voltages or one or more transient DC voltage waveforms
are progressively applied to the electrodes 3 so that
ions having a certain mass to charge ratio are separated
from other ions having different mass to charge ratios
which remain radially confined within the mass filter 1.


Claims

Note: Claims are shown in the official language in which they were submitted.



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Claims

1. A mass spectrometer comprising:
a mass filter for separating ions according to
their mass to charge ratio, said mass filter comprising
at least seven electrodes wherein, in use, an AC or RF
voltage is applied to said electrodes in order to
radially confine ions within said mass filter and
wherein in use one or more transient DC voltages or one
or more transient DC voltage waveforms are progressively
applied to said electrodes so that at least some ions
having a first mass to charge ratio are separated from
other ions having a second different mass to charge
ratio which remain substantially radially confined
within said mass filter.
2. A mass spectrometer as claimed in claim 1, wherein
said mass filter is maintained, in use, at a pressure
selected from the group consisting of: (i) greater than
or equal to 1x10 -7 mbar; (ii) greater than or equal to
5x10 -7 mbar; (iii) greater than or equal to 1x10 -6 mbar;
(iv) greater than or equal to 5x10 -6 mbar; (v) greater
than or equal to 1x10 -5 mbar; and (vi) greater than or
equal to 5x10 -5 mbar.
3. A mass spectrometer as claimed in claim 1 or 2,
wherein said mass filter is maintained, in use, at a
pressure selected from the group consisting of: (i) less
than or equal to 1x10 -4 mbar; (ii) less than or equal to
5x10 -5 mbar; (iii) less than or equal to 1x10 -5 mbar;


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(iv) less than or equal to 5x10 -6 mbar; (v) less than
equal to 1x10 -6 mbar; (vi) less than or equal to 5x10 -7
mbar; and (vii) less than or equal to 1x10 -7 mbar.
4. A mass spectrometer as claimed in claim 1, 2 or 3,
wherein said mass filter is maintained, in use, at a
pressure selected from the group consisting of: (i)
between 1x10 -7 and 1x10 -4 mbar; (ii) between 1x10 -7 and
5x10 -5 mbar; (iii) between 1x10 -7 and 1x10 -5 mbar; (iv)
between 1x10 -7 and 5x10 -6 mbar; (v) between 1x10 -7 and
1x10 -6 mbar; (vi) between 1x10 -7 and 5x10 -7 mbar; (vii)
between 5x10 -7 and 1x10 -4 mbar; (viii) between 5x10 -7 and
5x10 -5 mbar; (ix) between 5x10 -7 and 1x10 -5 mbar; (x)
between 5x10 -7 and 5x10 -6 mbar; (xi) between 5x10 -7 and
1x10 -6 mbar; (xii) between 1x10 -6 mbar and 1x10 -4 mbar;
(xiii) between 1x10 -6 and 5x10 -5 mbar; (xiv) between 1x10-
6 and 1x10 -5 mbar; (xv) between 1x10 -6 and 5x10 -6 mbar;
(xvi) between 5x10 -6 mbar and 1x10 -4 mbar; (xvii) between
5x10 -6 and 5x10 -5 mbar; (xviii) between 5x10 -6 and 1x10 -5
mbar; (xix) between 1x10 -5 mbar and 1x10 -4 mbar; (xx)
between 1x10 -5 and 5x10 -5 mbar; and (xxi) between 5x10 -5
and 1x10 -4 mbar.
5. A mass spectrometer as claimed in any preceding
claim, wherein said one or more transient DC voltages or
one or more transient DC voltage waveforms is such that
at least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or
95% of said ions having said first mass to charge ratio
are substantially moved along said mass filter by said
one or more transient DC voltages or said one or more
transient DC voltage waveforms as said one or more
transient DC voltages or said one or more transient DC


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voltage waveforms are progressively applied to said
electrodes.
6. A mass spectrometer as claimed in any preceding
claim, wherein said one or more transient DC voltages or
said one or more transient DC voltage waveforms are such
that at least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%,
90% or 95% of said ions having said second mass to
charge ratio are moved along said mass filter by said
applied DC voltage to a lesser degree than said ions
having said first mass to charge ratio as said one or
more transient DC voltages or said one or more transient
DC voltage waveforms are progressively applied to said
electrodes.
7. A mass spectrometer as claimed in any preceding
claim, wherein said one or more transient DC voltages or
said one or more transient DC voltage waveforms are such
that at least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%,
90% or 95% of said ions having said first mass to charge
ratio are moved along said mass filter with a higher
velocity than said ions having said second mass to
charge ratio.
8. A mass spectrometer comprising:
an mass filter for separating ions according to
their mass to charge ratio, said mass filter comprising
at least seven electrodes wherein, in use, an AC or RF
voltage is applied to said electrodes in order to
radially confine ions within said mass filter and
wherein in use one or more transient DC voltages or one
or more transient DC voltage waveforms are progressively
applied to said electrodes so that ions are moved


-39-


towards a region of the mass filter wherein at least one
electrode has a potential such that at least some ions
having a first mass to charge ratio will pass across
said potential whereas other ions having a second
different mass to charge ratio will not pass across said
potential but will remain substantially radially
confined within said mass filter.
9. A mass spectrometer as claimed in claim 8, wherein
said one or more transient DC voltages or said one or
more transient DC voltage waveforms are such that at
least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 95%
of said ions having said first mass to charge ratio pass
across said potential.
20. A mass spectrometer as claimed in claim 8 or 9,
wherein said one or more transient DC voltages or said
one or more transient DC voltage waveforms are such that
at least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or
95% of said ions having said second mass to charge ratio
will not pass across said potential.
11. A mass spectrometer as claimed in claim 8, 9 or 10,
wherein said at least one electrode is provided with a
voltage such that a potential hill or valley is
provided.
12. A mass spectrometer as claimed in any preceding
claim, wherein said one or more transient DC voltages or
said one or more transient DC voltage waveforms are such
that at least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%,
90% or 95% of said ions having said first mass to charge


-40-


ratio exit said mass filter substantially before ions
having said second mass to charge ratio.
13. A mass spectrometer as claimed in any preceding
claim, wherein said one or more transient DC voltages or
said one or more transient DC voltage waveforms are such
that at least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%,
90% or 95% of said ions having said second mass to
charge ratio exit said mass filter substantially after
ions having said first mass to charge ratio.
14. A mass spectrometer as claimed in any preceding
claim, wherein a majority of said tons having said first
mass to charge ratio exit said mass filter a time t
before a majority of said ions having said second mass
to charge ratio exit said mass filter, wherein t falls
within a range selected from the group consisting of:
(i) < 1 µs; (ii) 1-10 µs; (iii) 10-50 µs; (iv) 50-100
µs; (v) 100-200 µs; (vi) 200-300 µs; (vii) 300-400 µs;
(viii) 400-500 µs; (ix) 500-600 µs; (x) 600-700 µs; (xi)
700-800 µs; (xii) 800-900 µs; (xiii) 900-1000 µs.
15. A mass spectrometer as claimed in any of claims 1-
13, wherein a majority of said ions having said first
mass to charge ratio exit said mass filter a time t
before a majority of said ions having said second mass
to charge ratio exit said mass filter, wherein t falls
within a range selected from the group consisting of:
(i) 1.0-1.5 ms; (ii) 1.5-2.0 ms; (iii) 2.0-2.5 ms; (iv)
2.5-3.0 ms; (v) 3.0-3.5 ms; (vi) 3.5-4.0 ms; (vii) 4.0-
4.5 ms; (viii) 4.5-5.0 ms; (ix) 5-10 ms; (x) 10-15 ms;
(xi) 15-20 ms; (xii) 20-25 ms; (xiii) 25-30 ms; (xiv)
30-35 ms; (xv) 35-40 ms; (xvi) 40-45 ms; (xvii) 45-50


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ms; (xviii) 50-55 ms; (xix) 55-60 ms; (xx) 60-65 ms;
(xxi) 65-70 ms; (xxii) 70-75 ms; (xxiii) 75-80 ms;
(xxiv) 80-85 ms; (xxv) 85-90 ms; (xxvi) 90-95 ms;
(xxvii) 95-100 ms; and (xxviii) > 100 ms.
16. A mass spectrometer comprising:
a mass filter for separating ions according to
their mass to charge ratio, said mass filter comprising
a plurality of electrodes wherein, in use, an AC or RF
voltage is applied to said electrodes in order to
radially confine ions within said mass filter and
wherein in use one or more transient DC voltages or one
or more transient DC voltage waveforms are progressively
applied to said electrodes so that:
(i) ions are moved towards a region of the mass
filter wherein at least one electrode has a first
potential such that at least some ions having first and
second different mass to charge ratios will pass across
said first potential whereas other ions having a third
different mass to charge ratio will not pass across said
first potential; and then
(ii) ions having said first and second mass to
charge ratios are moved towards a region of the mass
filter wherein at least one electrode has a second
potential such that at least some ions having said first
mass to charge ratio will pass across said second
potential whereas other ions having said second
different mass to charge ratio will not pass across said
second potential.
17. A mass spectrometer as claimed in claim 16, wherein
said one or more transient DC voltages or said one or
more transient DC voltage waveforms and said first


-42-


potential are such that at least 10%, 20%, 30%, 40%,
50%, 60%, 70%, 80%, 90% or 95% of said ions having said
first mass to charge ratio pass across said first
potential.
18. A mass spectrometer as claimed in claim 16 or 17,
wherein said one or more transient DC voltages or said
one or more transient DC voltage waveforms and said
first potential are such that at least 10%, 20%, 30%,
40%, 50%, 60%, 70%, 80%, 90% or 95% of said ions having
said second mass to charge ratio pass across said first
potential.
19. A mass spectrometer as claimed in claim 16, 17 or
18, wherein said one or more transient DC voltages or
said one or more transient DC voltage waveforms and said
first potential are such that at least 10%, 20%, 30%,
40%, 50%, 60%, 70%, 80%, 90% or 95% of said ions having
said third mass to charge ratio do not pass across said
first potential.
20. A mass spectrometer as claimed in any of claims 16-
19, wherein said one or more transient DC voltages or
said one or more transient DC voltage waveforms and said
second potential are such that at least 10%, 20%, 30%,
40%, 50%, 60%, 70%, 80%, 90% or 95% of said ions having
said first mass to charge ratio pass across said second
potential.
21. A mass spectrometer as claimed in any of claims 16-
20, wherein said one or more transient DC voltages or
said one or more transient DC voltage waveforms and said
second potential are such that at least 10%, 20%, 30%,


-43-

40%, 50%, 60%, 70%, 80%, 90% or 95% of said ions having
said second mass to charge ratio do not pass across said
second potential.

22. A mass spectrometer as claimed in any of claims 16-
21, wherein said one or more transient DC voltages or
said one or more transient DC voltage waveforms are such
that at least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%,
90% or 95% of said ions having said second mass to
charge ratio exit said mass filter substantially before
ions having said first and third mass to charge ratios.

23. A mass spectrometer as claimed in any of claims 16-
22, wherein said one or more transient DC voltages or
said one or more transient DC voltage waveforms are such
that at least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%,
90% or 95% of said ions having said first and third mass
to charge ratios exit said mass filter substantially
after ions having said second mass to charge ratio.

24. A mass spectrometer as claimed in any of claims 16-
23, wherein a majority of said ions having said second
mass to charge ratio exit said mass filter a time t
before a majority of said ions having said first and
third mass to charge ratios exit said mass filter,
wherein t falls within a range selected from the group
consisting of: (i) < 1 µs; (ii) 1-10 µs; (iii) 10-50 µs;
(iv) 50-100 µs; (v) 100-200 µs; (vi) 200-300 µs; (vii)
300-400 µs; (viii) 400-500 µs; (ix) 500-600 µs; (x) 600-
700 µs; (xi) 700-800 µs; (xii) 800-900 µs; (xiii) 900-
1000 µs.


-44-

25. A mass spectrometer as claimed in any of claims 16-
23, wherein a majority of said ions having said second
mass to charge ratio exit said mass filter a time t
before a majority of said ions having said first and
third mass to charge ratios exit said mass filter,
wherein t falls within a range selected from the group
consisting of: (i) 1.0-1.5 ms; (ii) 1.5-2.0 ms; (iii)
2.0-2.5 ms; (iv) 2.5-3.0 ms; (v) 3.0-3.5 ms; (vi) 3.5-
4.0 ms; (vii) 4.0-4.5 ms; (viii) 4.5-5.0 ms; (ix) 5-10
ms; (x) 10-15 ms; (xi) 25-20 ms; (xii) 20-25 ms; (xiii)
25-30 ms; (xiv) 30-35 ms; (xv) 35-40 ms; (xvi) 40-45 ms;
(xvii) 45-50 ms; (xviii) 50-55 ms; (xix) 55-60 ms; (xx)
60-65 ms; (xxi) 65-70 ms; (xxii) 70-75 ms; (xxiii) 75-80
ms; (xxiv) 80-85 ms; (xxv) 85-90 ms; (xxvi) 90-95 ms;
(xxvii) 95-100 ms; and (xxviii) > 100 ms.

26. A mass spectrometer as claimed in any preceding,
claim, wherein said one or more transient DC voltages
create: (i) a potential hill or barrier; (ii) a
potential well; (iii) a combination of a potential hill
or barrier and a potential well; (iv) multiple potential
hills or barriers; (v) multiple potential wells; or (vi)
a combination of multiple potential hills or barriers
and multiple potential wells.

27. A mass spectrometer as claimed in any preceding
claim, wherein said one or more transient DC voltage
waveforms comprise a repeating waveform.

28. A mass spectrometer as claimed in claim 27, wherein
said one or more transient DC voltage waveforms comprise
a square wave.


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29. A mass spectrometer as claimed in any preceding
claim, wherein said one or more transient DC voltage
waveforms create a plurality of potential peaks or wells
separated by intermediate regions.

30. A mass spectrometer as claimed in claim 29, wherein
the DC voltage gradient in said intermediate regions is
zero or non-zero.

31. A mass spectrometer as claimed in claim 29, wherein
said DC voltage gradient in said intermediate regions is
positive or negative.

32. A mass spectrometer as claimed in claim 29, wherein
the DC voltage gradient in said intermediate regions is
linear.

33. A mass spectrometer as claimed in claims 29,
wherein the DC voltage gradient in said intermediate
regions is non-linear.

34. A mass spectrometer as claimed in claim 33, wherein
said DC voltage gradient in said intermediate regions
increases or decreases exponentially.

35. A mass spectrometer as Claimed in any of claims 29-
34, wherein the amplitude of said potential peaks or
wells remains substantially constant.

36. A mass spectrometer as claimed in any of claims 29-
34, wherein the amplitude of said potential peaks or
wells becomes progressively larger or smaller.



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37. A mass spectrometer as claimed in claim 36, wherein
the amplitude of said potential peaks or wells increases
or decreases either linearly or non-linearly.

38. A mass spectrometer as claimed in any preceding
claim, wherein in use an axial DC voltage gradient is
maintained along at least a portion of the length of
said mass filter and wherein said axial voltage gradient
varies with time.

39. A mass spectrometer as claimed in any preceding
claim, wherein said mass filter comprises a first
electrode held at a first reference potential, a second
electrode held at a second reference potential, and a
third electrode held at a third reference potential,
wherein:
at a first time t1 a first DC voltage is supplied
to said first electrode so that said first electrode is
held at a first potential above or below said first
reference potential;
at a second later time t2 a second DC voltage is
supplied to said second electrode so that said second
electrode is held at a second potential above or below
said second reference potential; and
at a third later time t3 a third DC voltage is
supplied to said third electrode so that said third
electrode is held at a third potential above or below
said third reference potential.

40. A mass spectrometer as claimed in claim 39,
wherein:


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at said first time t1 said second electrode is at
said second reference potential and said third electrode
is at said third reference potential;
at said second time t2 said first electrode is at
said first potential and said third electrode is at said
third reference potential; and
at said third time t3 said first electrode is at
said first potential and said second electrode is at
said second potential.

41. A mass spectrometer as claimed in claim 39,
wherein:
at said first time t1 said second electrode is at
said second reference potential and said third electrode
is at said third reference potential;
at said second time t2 said first electrode is no
longer supplied with said first DC voltage so that said
first electrode is returned to said first reference
potential and said third electrode is at said third
reference potential; and
at said third time t3 said first electrode is at
said first reference potential said second electrode is
no longer supplied with said second DC voltage so that
said second electrode is returned to said second
reference potential.

42. A mass spectrometer as claimed in any of claims 39-
41, wherein said first, second and third reference
potentials are substantially the same.

43. A mass spectrometer as claimed in any of claims 39-
41, wherein said first, second and third DC voltages are
substantially the same.



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44. A mass spectrometer as claimed in any of claims 39-
43, wherein said first, second and third potentials are
substantially the same.

45. A mass spectrometer as claimed in any preceding
claim, wherein said mass filter comprises 3, 4, 5, 6, 7,
8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21,
22, 23, 24, 25, 26, 27, 28, 29, 30 or >30
segments, wherein each segment comprises 1, 2, 3, 4, 5,
6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20,
21, 22, 23, 24, 25, 26, 27, 28, 29, 30 or >30 electrodes
and wherein the electrodes in a segment are maintained
at substantially the same DC potential.

46. A mass spectrometer as claimed in claim 45, wherein
a plurality of segments are maintained at substantially
the same DC potential.

47. A mass spectrometer as claimed in claim 45 or 46,
wherein each segment is maintained at substantially the
same DC potential as the subsequent nth segment wherein
n is 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16,
17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30
or >30.

48. A mass spectrometer as claimed in any preceding
claim, wherein ions are radially confined within said
mass filter in a pseudo-potential well and are moved
axially by a real potential barrier or well.

49. A mass spectrometer as claimed in any preceding
claim, wherein in use one or more AC or RF voltage
waveforms are applied to at least some of said


-49-

electrodes so that ions are urged along at least a
portion of the length of said mass filter.

50. A mass spectrometer as claimed in any preceding
claim, wherein the transit time of ions through said
mass filter is selected from the group consisting of:
(i) less than or equal to 20 ms; (ii) less than or equal
to 10 ms; (iii) less than or equal to 5 ms; (iv) less
than or equal to 1 ms; and (v) less than or equal to 0.5
ms.

51. A mass spectrometer as claimed in any preceding
claim, wherein said mass filter is maintained, in use,
at a pressure such that substantially no viscous drag is
imposed upon ions passing through said mass filter.

52. A mass spectrometer as claimed in any preceding
claim, wherein, in use, the mean free path of ions
passing through said mass filter is greater than the
length of said mass filter.

53. A mass spectrometer as claimed in any preceding
claim, wherein in use said one or more transient DC
voltages or said one or more transient DC voltage
waveforms are initially provided at a first axial
position and are then subsequently provided at second,
then third different axial positions along said mass
filter.

54. A mass spectrometer as claimed in any preceding
claim, wherein said one or more transient DC voltages or
said one or more transient DC voltage waveforms move
from one end of said mass filter to another end of said


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mass filter so that at least some ions are urged along
said mass filter.

55. A mass spectrometer as claimed in any preceding
claim, wherein said one or more transient DC Voltages or
said one or more transient DC voltage waveforms have at
least 2, 3, 4, 5, 6, 7, 8, 9 or 10 different amplitudes.

56. A mass spectrometer as claimed in any preceding
claim, wherein the amplitude of said one or more
transient DC voltages or said one or more transient DC
voltage waveforms remains substantially constant with
time.

57. A mass spectrometer as claimed in any of claims 1-
55, wherein the amplitude of said one or more transient
DC voltages or said one or more transient DC voltage
waveforms varies with time.

58. A mass spectrometer as claimed in claim 57, wherein
the amplitude of said one or more transient DC voltages
or said one or more transient DC voltage waveforms
either: (i) increases with time; (ii) increases then
decreases with time; (iii) decreases with time; or (iv)
decreases then increases with time.

59. A mass spectrometer as claimed in any preceding
claim, wherein said mass filter comprises an upstream
entrance region, a downstream exit region and an
intermediate region, wherein:
in said entrance region the amplitude of said one
or more transient DC voltages or said one or more
transient DC voltage waveforms has a first amplitude;


-51-

in said intermediate region the amplitude of said
one or more transient DC voltages or said one or more
transient DC voltage waveforms has a second amplitude;
and
in said exit region the amplitude of said one or
more transient DC voltages or said one or more transient
DC voltage waveforms has a third amplitude.

60. A mass spectrometer as claimed in claim 59, wherein
the entrance and/or exit region comprise a proportion of
the total axial length of said mass filter selected from
the group consisting of: (i) < 5%; (ii) 5-10%; (iii) 10-
15%; (iv) 15-20%; (v) 20-25%; (vi) 25-30%; (vii) 30-35%;
(viii) 35-40%; and (ix) 40-45%.

61. A mass spectrometer as claimed in claim 59 or 60,
wherein said first and/or third amplitudes are
substantially zero and said second amplitude is
substantially non-zero.

62. A mass spectrometer as claimed in claim 59, 60 or
61, wherein said second amplitude is larger than said
first amplitude and/or said second amplitude is larger
than said third amplitude.

63. A mass spectrometer as claimed in any preceding
claim, wherein said one or more transient DC voltages or
said one or more transient DC voltage waveforms pass in
use along said mass filter with a first velocity.

64. A mass spectrometer as claimed in claim 63, wherein
said first velocity: (i) remains substantially constant;
(ii) varies; (iii) increases; (iv) increases then


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decreases; (v) decreases; (vi) decreases then increases;
(vii) reduces to substantially zero; (viii) reverses
direction; or (ix) reduces to substantially zero and
then reverses direction.

65. A mass spectrometer as claimed in claim 63 or 64,
wherein said one or more transient DC voltages or said
one or more transient DC voltage waveforms causes some
ions within said mass filter to pass along said mass
filter with a second different velocity.

66. A mass spectrometer as claimed in claim 53, 64 or
65, wherein said one or more transient DC voltages or
said one or more transient DC voltage waveforms causes
at least some ions within said mass filter to pass along
said mass filter with a third different velocity.

67. A mass spectrometer as claimed in any of claims 63-
66, wherein said one or more transient DC voltages or
said one or more transient DC voltage waveforms causes
at least some ions within said mass filter to pass along
said mass filter with a fourth different velocity.

68. A mass spectrometer as claimed in any of claims 63-
67, wherein said one or more transient DC voltages or
said one or more transient DC voltage waveforms causes
at least some ions within said mass filter to pass along
said mass filter with a fifth different velocity.

69. A mass spectrometer as claimed in any of claims 63-
68, wherein said second and/or said third and/or said
fourth and/or said fifth velocity is at least 1, 5, 10,




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15, 20, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80,
85, 90, 95 or 100 m/s faster than said first velocity.

70. A mass spectrometer as claimed in any of claims 63-
68, wherein said second and/or said third and/or said
fourth and/or said fifth velocity is at least 1, 5, 10,
15, 20, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80,
85, 90, 95 or 100 m/s slower than said first velocity.

71. A mass spectrometer as claimed in any of claims 63-
70, wherein said first velocity is selected from the
group consisting of: (i) 10-250 m/s; (ii) 250-500 m/s;
(iii) 500-750 m/s; (iv) 750-1000 m/s; (v) 1000-1250 m/s;
(vi) 1250-1500 m/s; (vii) 1500-1750 m/s; (viii) 1750-
2000 m/s; (ix) 2000-2250 m/s; (x) 2250-2500 m/s; (xi)
2500-2750 m/s; (xii) 2750-3000 m/s; (xiii) 3000-3250
m/s; (xiv) 3250-3500 m/s; (xv) 3500-3750 m/s; (xvi)
3750-4000 m/s; (xvii) 4000-4250 m/s; (xviii) 4250-4500
m/s; (xix) 4500-4750 m/s; (xx) 4750=5000 m/s; (xxi)
5000-5250 m/s; (xxii) 5250-5500 m/s; (xxiii) 5500-5750
m/s; (xxiv) 5750-6000 m/s; and (xxv) > 6000 m/s.

72. A mass spectrometer as claimed in claim 63-71,
wherein said second and/or said third and/or said fourth
and/or said fifth velocity are selected from the group
consisting of: (i) 10-250 m/s; (ii) 250-500 m/s; (iii)
500-750 m/s; (iv) 750-1000 m/s; (v) 1000-1250 m/s; (vi)
1250-1500 m/s; (vii) 1500-1750 m/s; (viii) 1750-2000
m/s; (ix) 2000-2250 m/s; (x) 2250-2500 m/s; (xi) 2500-
2750 m/s; (xii) 2750-3000 m/s; (xiii) 3000-3250 m/s;
(xiv) 3250-3500 m/s; (xv) 3500-3750 m/s; (xvi) 3750-4000
m/s; (xvii) 4000-4250 m/s; (xviii) 4250-4500 m/s; (xix)
4500-4750 m/s; (xx) 4750-5000 m/s; (xxi) 5000-5250 m/s;




-54-

(xxii) 5250-5500 m/s; (xxiii) 5500-5750 m/s; (xxiv)
5750-6000 m/s; and (xxv) > 6000 m/s.

73. A mass spectrometer as claimed in any preceding
claim, wherein said one or more transient DC voltages or
said one or more transient DC voltage waveforms has a
frequency, and wherein said frequency: (i) remains
substantially constant; (ii) varies; (iii) increases;
(iv) increases then decreases; (v) decreases; or (vi)
decreases then increases.

74. A mass spectrometer as claimed in any preceding
claim, wherein said one or more transient DC voltages or
said one or more transient DC voltage waveforms has a
wavelength, and wherein said wavelength: (i) remains
substantially constant; (ii) varies; (iii) increases;
(iv) increases then decreases; (v) decreases; or (vi)
decreases then increases.

75. A mass spectrometer as claimed in any preceding
claim, wherein two or more transient DC voltages or two
or more transient DC voltage waveforms pass
simultaneously along said mass filter.

76. A mass spectrometer as claimed in claim 75, wherein
said two or more transient DC voltages or said two or
more transient DC voltage waveforms are arranged to
move: (i) in the same direction; (ii) in opposite
directions; (iii) towards each other; or (iv) away from
each other.

77. A mass spectrometer as claimed in any preceding
claim, wherein said one or more transient DC voltages or




-55-


said one or more transient DC voltage waveforms passes
along said mass filter and at least one substantially
stationary transient DC potential voltage or voltage
waveform is provided at a position along said mass
filter.

78. A mass spectrometer as claimed in any preceding
claim, wherein said one or more transient DC voltages or
said one or more transient DC voltage waveforms are
repeatedly generated and passed in use along said mass
filter, and wherein the frequency of generating said one
or more transient DC voltages or said one or more
transient DC voltage waveforms (i) remains
substantially constant; (ii) varies; (iii) increases;
(iv) increases then decreases; (v) decreases; or (vi)
decreases then increases.

79. A mass spectrometer as claimed in any preceding
claim, wherein in use a continuous beam of ions is
received at an entrance to said mass filter.

80. A mass spectrometer as claimed in any of claims 1-
78, wherein in use packets of ions are received at an
entrance to said mass filter.

81. A mass spectrometer as claimed in any preceding
claim, wherein in use pulses of ions emerge from an exit
of said mass filter.

82. A mass spectrometer as claimed in claim 81, further
comprising an ion detector, said ion detector being
arranged to be substantially phase locked in use with


-56-

the pulses of ions emerging from the exit of the mass
filter.

83. A mass spectrometer as claimed in claim 81 or 82,
further comprising a Time of Flight mass analyser
comprising an electrode for injecting ions into a drift
region, said electrode being arranged to be energised in
use in a substantially synchronised manner with the
pulses of ions emerging from the exit of the mass
filter.

84. A mass spectrometer as claimed in any preceding
claim, wherein said mass filter is selected from the
group consisting of: (i) an ion funnel comprising a
plurality of electrodes having apertures therein through
which ions are transmitted in use, wherein the diameter
of said apertures becomes progressively smaller or
larger; (ii) an ion tunnel comprising a plurality of
electrodes having apertures therein through which ions
are transmitted in use, wherein the diameter of said
apertures remains substantially constant; and (iii) a
stack of plate, ring or wire loop electrodes.

85. A mass spectrometer as claimed in any preceding
claim, wherein said mass filter comprises a plurality of
electrodes, each electrode having an aperture through
which ions are transmitted in use.

86. A mass spectrometer as claimed in any preceding
claim, wherein each electrode has a substantially
circular aperture.




-57-

87. A mass spectrometer as claimed in any preceding
claim, wherein each electrode has a single aperture
through which ions are transmitted in use.

88. A mass spectrometer as claimed in Claim 85, 86 or
87, wherein the diameter of the apertures of at least
10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 95% of
the electrodes forming said mass filter is selected from
the group Consisting of: (i) less than or equal to 10
mm; (ii) less than or equal to 9 mm; (iii) less than or
equal to 8 mm; (iv) less than or equal to 7 mm; (v) less
than or equal to o mm; (vi) less than or equal to 5 mm;
(vii) less than or equal to 4 mm; (viii) less than or
equal to 3 mm; (ix) less than or equal to 2 mm; and (x)
less than or equal to 1 mm.

89. A mass spectrometer as claimed in any preceding
Claim, wherein at least 10%, 20%, 30%, 40%, 50%, 60%,
70%, 80%, 90% or 95% of the electrodes forming the mass
filter have apertures which are substantially the same
size or area.

90. A mass spectrometer as claimed in any of Claims 1-
83, wherein said mass filter comprises a segmented rod
set.

91. A mass spectrometer as Claimed in any preceding
Claim, wherein said mass filter consists of: (i) 10-20
electrodes; (ii) 20-30 electrodes; (iii) 30-40
electrodes; (iv) 40-50 electrodes; (v) 50-60 electrodes;
(vi) 60-70 electrodes; (vii) 70-80 electrodes; (viii)
80-90 electrodes; (ix) 90-100 electrodes; (x) 100-110
electrodes; (xi) 110-120 electrodes; (xii) 120-130




-58-

electrodes; (xiii) 130-140 electrodes; (xiv) 140-150
electrodes; (xv) more than 150 electrodes; or (xvi) >= 15
electrodes.

92. A mass spectrometer as claimed in any preceding
claim, wherein the thickness of at least 10%, 20%, 30%,
40%, 50%, 60%, 70%, 80%, 90% or 95% of said electrodes
is selected from the group consisting of: (i) less than
or equal to 3 mm; (ii) less than or equal to 2.5 mm;
(iii) less than or equal to 2.0 mm; (iv) less than or
equal to 1.5 mm; (v) less than or equal to 1.0 mm; and
(vi) less than or equal to 0.5 mm.

93. A mass spectrometer as claimed in any preceding
claim, wherein said mass filter has a length selected
from the group consisting of: (i) less than 5 cm; (ii)
5-10 cm; (iii) 10-15 cm; (iv) 15-20 cm; (v) 20-25 cm;
(vi) 25-30 cm; and (vii) greater than 30 cm.

94. A mass spectrometer as claimed in any preceding
claim, wherein at least 10,%, 20,%, 30,%, 40,%, 50%, 60,%,
70%, 80%, 90%, or 95% of said electrodes are connected
to both a DC and an AC or RF voltage supply.

95. A mass spectrometer as claimed .in any preceding
claim, wherein axially adjacent electrodes are supplied
with AC or RF voltages having a phase difference of
180°.

96. A mass spectrometer as claimed in any preceding
claim, further comprising an ion source selected from
the group consisting of a (i) Electrospray ("ESI") ion
source; (ii) Atmospheric Pressure Chemical Ionisation


-59-


("APCI") ion source; (iii) Atmospheric Pressure Photo
Ionisation ("APPI") ion source; (iv) Matrix Assisted
Laser Desorption Ionisation ("MALDI") ion source; (v)
Laser Desorption Ionisation ("LDI") ion source; (vi)
Inductively Coupled Plasma ("ICP") ion source; (vii)
Electron Impact ("EI) ion source; (viii) Chemical
Ionisation ("CI") ion source; (ix) a Fast Atom
Bombardment ("FAB") ion source; and (x) a Liquid
Secondary Ions Mass Spectrometry ("LSIMS") ion source.

97. A mass spectrometer as claimed in any of claims 1-
96, further comprising a continuous ion source.

98. A mass spectrometer as claimed in any of claims 1-
96, further comprising a pulsed ion source.

99. A mass filter for separating ions according to
their mass to charge ratio, said mass filter comprising
at least seven electrodes wherein, in use, an AC or RF
voltage is applied to said electrodes in order to
radially confine ions within said mass filter and
wherein in use one or more transient DC voltages or one
or more transient DC voltage waveforms are progressively
applied to said electrodes so that at least some ions
having a first mass to charge ratio are separated from
other ions having a second different mass to charge
ratio which remain substantially radially confined
within said mass filter.

100. A mass filter for separating ions according to
their mass to charge ratio, said mass filter comprising
at least seven electrodes wherein, in use, an AC or RF
voltage is applied to said electrodes in order to




-60-

radially confine ions within said mass filter and
wherein in use one or more transient DC voltages or one
or more transient DC voltage waveforms are progressively
applied to said electrodes so that ions are moved
towards a region of the mass filter wherein at least one
electrode has a potential such that at least some ions
having a first mass to charge ratio will pass across
said potential whereas other ions having a second
different mass to charge ratio will not pass across said
potential but will remain substantially radially
confined within said mass filter.

101. A mass filter for separating ions according to
their mass to charge ratio, said mass filter comprising
a plurality of electrodes wherein, in use, an AC or RF
voltage is applied to said electrodes in order to
radially confine ions within said mass filter and
wherein in use one or more transient DC voltages or one
or more transient DC voltage waveforms are progressively
applied to said electrodes so that:

(i) ions are moved towards a region of the mass
filter wherein at least one electrode has a first
potential such that at least some ions having first and
second different mass to charge ratios will pass across
said first potential whereas other ions having a third
different mass to charge ratio will not pass across said
first potential; and then
(ii) ions having said first and second mass to
charge ratios are moved towards a region of the mass
filter wherein at least one electrode has a second
potential such that at least some ions having said first
mass to charge ratio will pass across said second
potential whereas other ions having said second



-61-

different mass to charge ratio will not pass across said
second potential.

102. A method of mass spectrometry comprising:

receiving ions in a mass filter comprising at least
seven electrodes wherein an AC or RF voltage is applied
to said electrodes in order to radially confine ions
within said mass filter; and

progressively applying to said electrodes one or
more transient DC voltages or one or mare transient DC
voltage waveforms so that at least some ions having a
first mass to charge ratio are separated from other ions
having a second different mass to charge ratio which
remain substantially radially confined within said mass
filter.

103. A method of mass spectrometry comprising:
receiving ions in a mass filter comprising at least
seven electrodes wherein an AC or RF voltage is applied
to said electrodes in order to radially confine ions
within said mass filter; and

progressively applying to said electrodes one or
more transient DC voltages or one or more transient DC
voltage waveforms so that ions are moved towards a
region of the mass filter wherein at least one electrode
has a potential such that at least some ions having a
first mass to charge ratio will pass across said
potential whereas other ions having a second different
mass to charge ratio will not pass across said potential
but will remain substantially radially confined within
said mass filter.



-62-


104. A method of mass spectrometry comprising:

receiving ions in a mass filter comprising a
plurality of electrodes wherein an AC or RF voltage is
applied to said electrodes in order to radially confine
ions within said mass filter;

progressively applying to said electrodes one or
more transient DC voltages or one or more transient DC
voltage waveforms sa that ions are moved towards a
region of the mass filter wherein at least one electrode
has a first potential such that at least some ions
having a first and second different mass to charge
ratios will pass across said first potential whereas
other ions having a third different mass to charge ratio
will not pass across said first potential; and then
progressively applying to said electrodes one or
more transient DC voltages or one or more transient DC
voltage waveforms so that ions having said first and
second mass to charge ratios are moved towards a region
of the mass filter wherein at least one electrode has a
second potential such that at least some ions having
said first mass to charge ratio will pass across said
second potential whereas other ions having said second
different mass to charge ratio will not pass across said
second potential.

105. A method of mass to charge ratio separation
comprising:

receiving ions in a mass filter comprising at least
seven, electrodes wherein an AC or RF voltage is applied
to said electrodes in order to radially confine ions
within said mass filter; and
progressively applying to said electrodes one or
more transient DC voltages or one or more transient DC


-63-

voltage waveforms so that at least some ions having a
first mass to charge ratio are separated from other ions
having a second different mass to charge ratio which
remain substantially radially confined within said mass
filter.
106. A method of mass to charge ratio separation
comprising:
receiving ions in a mass filter comprising at least
seven electrodes wherein an AC or RF voltage is applied
to said electrodes in order to radially confine ions
within said mass filter; and
progressively applying to said electrodes one or
more transient DC voltages or one or more transient DC
voltage waveforms so that ions are moved towards a
region of the mass filter wherein at least one electrode
has a potential such that at least some ions having a
first mass to charge ratio will pass across said
potential whereas other ions having a second different
mass to charge ratio will not pass across said potential
but will remain substantially radially confined within
said mass filter:
107. A method of mass to charge ratio separation
comprising:
receiving ions in a mass filter comprising a
plurality of electrodes wherein an AC or RF voltage is
applied to said electrodes in order to radially confine
ions within said mass filter;
progressively applying to said electrodes one or
more transient DC voltages or one or more transient DC
voltage waveforms so that ions are moved towards a
region of the mass filter wherein at least one electrode



-64-

has a first potential such that at least some ions
having a first and second different mass to charge
ratios will pass across said first potential whereas
other ions having a third different mass to charge ratio
will not pass across said first potential; and then
progressively applying to said electrodes one or
more transient DC voltages or one or more transient DC
voltage waveforms so that ions having said first and
second mass to charge ratios are moved towards a region
of the mass filter wherein at least one electrode has a
second potential such that at least some ions having
said first mass to charge ratio will pass across said
second potential whereas other ions having said second
different mass to charge ratio will not pass across said
second potential.
108. A mass filter wherein ions separate within said
mass filter according to their mass to charge ratio and
assume different essentially static or equilibrium axial
positions along the length of said mass filter.
109. A mass filter as claimed in claim 108, wherein said
mass filter comprises a plurality of electrodes wherein,
in use, an AC or RF voltage is applied to said
electrodes in order to radially confine ions within said
mass filter.
110. A mass filter as claimed in claim 109, wherein one
or more transient DC voltages or one or more transient
DC voltage waveforms are progressively applied to said
electrodes so as to urge at least some ions in a first
direction.


-65-

111. A mass filter as claimed in claim 110, wherein a DC
voltage gradient acts to urge at least some ions in a
second direction, said second direction being opposed to
said first direction.
112. A mass filter as claimed in claim 110 or 111,
wherein the peak amplitude of said one or more transient
DC voltages or said one or more transient DC voltage
waveforms remains substantially constant or reduces
along the length of the mass filter.
113. A mass filter as claimed in claim 111 or 112,
wherein said DC Voltage gradient progressively increases
along the length of the mass filter.
114. A mass filter as claimed in any of claims 108-113,
wherein once ions have assumed essentially static or
equilibrium axial positions along the length of said
mass. filter at least some of said ions are then arranged
to be moved towards an exit of said mass filter.
115. A mass filter as claimed in claim 114, wherein at
least some of said ions are arranged to be moved towards
an exit of said mass filter by: (i) reducing or
increasing an axial DC Voltage gradient; (ii) reducing
or increasing the peak amplitude of one or more
transient DC voltages or one or more transient DC
voltage waveforms; (iii) reducing or increasing the
velocity of one or more transient DC Voltages or one or
more transient DC voltage waveforms; or (iv) reducing or
increasing the pressure within said mass filter.


-66-

116. A mass spectrometer comprising a mass filter as
claimed in any of claims 108-115.
117. A method of mass to charge ratio separation
comprising causing ions to separate within a mass filter
and assume different essentially static or equilibrium
axial positions along the length of the mass filter.
118. A method of mass to charge ratio separation as
claimed in claim 117, wherein said mass filter comprises
a plurality of electrodes wherein, in use, an AC or RF
voltage is applied to said electrodes in order to
radially confine ions within said mass filter.
119. A method of mass to charge ratio separation as
claimed in claim 118, wherein one or more transient DC
voltages or one or more transient DC voltage waveforms
are progressively applied to said electrodes so as to
urge at least some ions in a first direction.
120. A method of mass to charge ratio separation as
claimed in claim 119, wherein a DC voltage gradient acts
to urge at least some ions in a second direction, said
second direction being opposed to said first direction.
121. A method of mass to charge ratio separation as
claimed in claim 119 or 120, wherein the peak amplitude
of said one or more transient DC voltages or said one or
more transient DC voltage waveforms remains
substantially constant or reduces along the length of
the mass filter.


-67-

122. A method of mass to charge ratio separation as
claimed in claim 120 or 121, wherein said DC voltage
gradient progressively increases along the length of the
mass filter.
123. A method of mass to charge ratio separation as
claimed in any of claims 117-122, wherein once ions have
assumed essentially static or equilibrium axial
positions along the length of said mass filter at least
some of said ions are then arranged to be moved towards
an exit of said mass filter.
124. A method of mass to charge ratio separation as
claimed in claim 123, wherein at least some of said ions
are arranged to be moved towards an exit of said mass
filter by: (i) reducing or increasing an axial DC
voltage gradient; (ii) reducing or increasing the peak
amplitude of one or more transient DC voltages or one or
more transient DC voltage waveforms; (iii) reducing or
increasing the velocity of one or more transient DC
voltages or one or more transient DC voltage waveforms;
or (iv) reducing or increasing the pressure within said
mass filter.
125. A method of mass spectrometry comprising any of the
methods of mass to charge ratio separation as claimed in
claims 117-124.

Description

Note: Descriptions are shown in the official language in which they were submitted.


CA 02447057 2003-10-28
MASS SPECTROMETER
The present invention relates to a mass
spectrometer, a mass filter, a method of mass
spectrometry and a method of mass to charge ratio
separation.
Radio Frequency (RF) ion guides are commonly used
for confining and transporting ions. Conventional RF
ion guides use an arrangement of electrodes wherein an
RF voltage is applied to neighbouring electrodes so that
a radial pseudo-potential well or va)_ley is generated in
order to radially confine ions within the ion guide.
Conventional RF ion guides include quadrupole, hexapole
and octapole rod sets. Ion tunnel ion guides are also
known which comprise a plurality of stacked rings or
electrodes having apertures through which ions are
transmitted and wherein opposite phases of an RF voltage
supply are applied to adjacent rings.
In addition to ion guides per se, 2D and 3D
quadrupole ion traps and quadrupole rod set mass filters
are known. Quadrupole rod set mass filters comprise
four rod electrodes wherein diametrically opposed rods
are maintained at the same AC and DC potential.
Adjacent or neighbouring rods are supplied with opposite
phases of an AC voltage supply. A DC potential
difference is maintained between adjacent rods when the
set is operated in a mass filtering mode. Ions having
specific mass to charge ratios are arranged to pass
through the quadrupole rod set mass filter with
substantially stable trajectories. However, all other
ions are arranged so as to have substantially unstable
trajectories as they pass through the quadrupole rod set
mass filter. Those ions which. have unstable

CA 02447057 2003-10-28
'_' G _°
trajectories are not radially confined within the
quadrupole mass filter and will therefore, most likely,
hit one of the rods and be lost. Conventional
quadrupole rod set mass filters therefore suffer from
the problem that although they may transmit specific
ions having normally a relat~_vely narrow or specific
range of mass to charge ratios with a high transmission
efficiency, all other ions will be lost. Furthermore,
conventional quadrupole rod set mass filters are also
normally relatively long and this makes the
miniaturisation of mass spectrometers problematic.
It is therefore desired to provide an improved mass
filter for use in a mass spectrometer.
According to the present invention there is
provided a mass spectrometer comprising:
a mass filter for separating ions according to
their mass to charge ratio, the mass filter comprising
at least seven electrodes wherein, in use, an AC or RF
voltage is applied to the electrodes in order to
radially confine ions within the mass filter and wherein
in use one or more transient DC voltages or one or more
transient DC voltage waveforms are progressively applied
to the electrodes so that at least some ions having a
first mass to charge ratio are separated from other ions
' having a second different mass to charge ratio which
remain substantially radially confined within the mass
filter.
Conventional quadrupole rod set mass
filters/analysers are not intended to fall within the
scope of protection afforded by the present invention.
In particular, conventional quadrupole rod set mass
filters/analysers comprise four electrodes and ions
which are not passed by the mass filter are not radially

CA 02447057 2003-10-28
confined within the mass filter/analyser but are lost to
the electrodes. Conventional 2D and 3D quadrupole ion
traps are also not intended to fall within the scope of
protection afforded by the present invention.
A mass filter according to the preferred embodiment
is particularly advantageous compared with a
conventional quadrupole mass filter in that the
preferred mass filter preferably has a high duty cycle
across a wide mass to charge ratio range and also
enables ions to be ejected on a flexible timescale.
The preferred mass filter can also operate with duty
cycles up to 100% since it is possible to eject only
those ions having a desired mass to charge ratio whilst
all other ions preferably remain stored, trapped or
otherwise radially confined within the mass filter for
subsequent mass filtering or analysis.
The preferred embodiment preferably also has a
folded geometry so that ions may be sent backwards and
forwards through the mass filter so that a relatively
compact mass filter is provided. This arrangement also
facilitates band-pass modes of operation.
The preferred mass filter also exhibits a higher
sensitivity compared with conventional quadrupole mass
filters.
According to an embodiment a repeating pattern of
electrical DC potentials are preferably superimposed
along the length of the mass filter so that a periodic
DC voltage waveform is provided. The DC voltage
waveform may be caused to travel along the length of the
mass filter in the direction in which it is required to
move the ions and at a velocity at which it is required
to move the ions.

CA 02447057 2003-10-28
- 4 -
The mass filter may comprise an AC or RF ion guide
such as preferably a stacked ring set (or ion tunnel ion
guide) or less preferably a segmented multipole rod set.
The preferred mass filter is preferably segmented in the
axial direction so that independent transient DC
potentials may be applied to each segment. The
transient DC potentials are preferably superimposed on
top of an AC or RF voltage (which acts to radially
confine ions) and/or any constant DC offset voltage.
The transient DC potential or waveform generates a DC
potential or waveform which may be considered to
effectively move along the mass filter in the axia-1
direction.
At any instant in time an axial voltage gradient is
preferably generated between segments which acts to push
or pull ions in a certain direction. As the ions move
in the required direction the voltage gradient similarly
moves as the transient DC potentials) are progressively
applied or switched to successive electrodes. The
individual DC voltages on each of the segments are
preferably programmed to create a required DC voltage
waveform. The individual DC voltages on each of the
segments may also be programmed to change in synchronism
so that a DC potential waveform is maintained but is
translated in the direction i.n which it is required to
move the ions.
The mass filter is preferably maintained, in use,
at a pressure selected from the group consisting of: (i)
greater than or equal to 1x10-' mbar; (ii) greater than
or equal to 5x10-' mbar; (iii) greater than or equal to
1x10-6 mbar; (iv) greater than or equal to 5x10-6 mbar;
(v) greater than or equal to 1x10-5 mbar; and (vi)
greater than or equal to 5x10-5 mbar. The mass filter is

CA 02447057 2003-10-28
preferably maintained, in use, at a pressure selected
from the group consisting of: (i) less than or equal to
1x10-4 mbar; ( ii ) less than or equal to 5x10-5 mbar;
(iii) less than or equal to 1x10-5 mbar; (iv) less than
or equal to 5x10-6 mbar; (v) less than or equal to 1x10-6
mbar; (vi) less than or equal to 5x10-' mbar; and (vii)
less than or equal to 1x10-7 mbar. The mass filter may
be maintained, in use, at a pressure selected from the
group consisting of: (i) between 1x10-' and 1x10-4 mbar;
( ii ) between 1x10-7 and 5x10-5 mbar; f, iii ) between 1x10-'
and 1x10-5 mbar; (iv) between 1x10-' and 5x10-6 mbar; (v)
between 1x10-' and 1x106 mbar; (vi ) between 1x10-' and
5x10-' mbar; (vii) between 5x10-' and 1x10-4 mbar; (viii)
between 5x10-' and 5x10-5 mbar; (ix) between 5x10-' and
1x10-5 mbar; (x) between 5x10-' and 5x10-6 mbar; (xi)
between 5x10-' and 1x10-6 mbar; (xii) between 1x10-6 mbar
and 1x10-4 mbar; (xiii) between 1x10-6 and 5x10-5 mbar;
(xiv) between 1x10-6 and 1x10-5 mbar; (xv) between 1x10-6
and 5x10-6 mbar; (xvi ) between 5x10-6 mbar and 1x10--4
mbar; (xvii) between 5x10-6 and 5x10-5 mbar; (xviii)
between 5x10-6 and 1x10-5 mbar; (xix) between 1x10-5 mbar
and 1x10-4 mbar; (xx) between 1x10-5 and 5x10-5 mbar; and
(xxi) between 5x10-5 and 1x10-4 mbar.
The one or more transient DC voltages or one or
more transient DC voltage waveforms is preferably such
that at least 10%, 20%, 30%, 40%, 50 0, 60 0, 70%, 80%,
90% or 95% of the ions having the first mass to charge
ratio are substantially moved along the mass filter by
the one or more transient DC voltages or the one or more
transient DC voltage waveforms as the one or more
transient DC voltages or the one or more transient DC
voltage waveforms are progressively applied to the
electrodes.

CA 02447057 2003-10-28
- 6 -
The one or more transient DC voltages or the one or
more transient DC voltage waveforms are preferably such
that at least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80o,
90% or 95% of the ions having the second mass to charge
ratio are moved along the mass filter by the applied DC
voltage to a lesser degree than the ions having the
first mass to charge ratio as the one or more transient
DC voltages or the one or more transient DC voltage
waveforms are progressively applied to the electrodes.
The one or more transient DC voltages or the one or
more transient DC voltage waveforms are preferably such
that at least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 800,
900 or 95% of the ions having the first mass to charge
ratio are moved along the mass filter with a higher
velocity than the ions having the second mass to charge
ratio.
According to another aspect of the present
invention there is provided a mass spectrometer
comprising:
a mass filter for separating ions according to
their mass to charge ratio, the mass filter comprising
at least seven electrodes wherein, in use, an AC or RF
voltage is applied to the electrodes in order to
radially confine ions within the mass filter and wherein
in use one or more transient DC voltages or one or more
transient DC voltage waveforms are progressively applied
to the electrodes so that ions are moved towards a
region of the mass filter wherein at least one electrode
has a potential such that at least some ions having a
first mass to charge ratio will pass across the
potential whereas other ions having a second different
mass to charge ratio will not pass across the potential

CA 02447057 2003-10-28
7 -
but will remain substantially radially confined within
the mass filter.
The one or more transient DC voltages or the one or
more transient DC voltage waveforms are preferably such
that at least 100, 20%, 30~, 400, 500, 600, 70%, 80%,
90% or 950 of the ions having the first mass to charge
ratio pass across the potential. The one or more
transient DC voltages or the one or more transient DC
voltage waveforms are such that at least 100, 200, 30%,
40 0, 50 0, 60 0, 70%, 80 0, 90 0 or 95 0 of the ions having
the second mass to charge ratio will not pass across the
potential. The at least one electrode is preferably
provided with a voltage such that a potential hill or
valley is provided. Some ions will be able to pass
through or across the potential hill or valley whereas
other ions will be substantially prevented from passing
through or across the potential hill or valley.
The one or more transient DC vo)_tages or the one or
more transient DC voltage waveforms are preferably such
that at least 10 0, 20 0, 30 0, 40 0, 50 0, 60%, 70 0, 80 0,
90~ or 95~ of the ions having the first mass to charge
ratio exit the mass filter substantially before ions
having the second mass to charge ratio. The one or more
transient DC voltages or the one or more transient DC
voltage waveforms are preferably such that at least 100,
20 0, 30 0, 40%, 50 0, 60 0, 70 0, 80 0, 90 0 or 95 0 of the
ions having the second mass to charge ratio exit the
mass filter substantially after ions having the first
mass to charge ratio.
A majority of the ions having the first mass to
charge ratio preferably exit the mass filter a time t
before a majority of the ions having the second mass to
charge ratio exit the mass filter, wherein t falls

CA 02447057 2003-10-28
. within a range selected from the group consisting of:
(i) < 1 us; (ii) 1-10 us; (iii) 10-50 us; (iv) 50-100
us; (v) 100-200 us; (vi) 200-300 us; (Vii) 300-400 us;
(viii) 400-500 ~s; (ix) 500-600 us; (x) 600-700 ~s; (xi)
700-800 ~.s; (xii) 800-900 ~s; (xiii) 900-1000 us;
According to another embodiment t falls within a
range selected from the group consisting of: (i) 1.0-1.5
ms; (ii) 1.5-2.0 ms; (iii) 2.0-2.5 ms; (iv) 2.5-3.0 ms;
(v) 3.0-3.5 ms; (vi) 3.5-4.0 ms; (vii) 4.0-4.5 ms;
(viii) 4.5-5.0 ms; (ix) 5-10 ms; (x) 10-15 ms; (xi) 15-
ms; (xii) 20-25 ms; (xiii) 25-30 ms; (xiv) 30-35 ms;
(xv) 35-40 ms; (xvi) 40-45 ms; (xvii) 45-50 ms; (xviii)
50-55 ms; (xix) 55-60 ms; (xx) 60-65 ms; (xxi) 65-70 ms;
(xxii) 70-75 ms; (xxiii) 75-80 ms; (xxiv) 80-85 ms;
15 (xxv) 85-90 ms; (xxvi) 90-95 ms; (xxvii) 95-100 ms; and
(xxviii) > 100 ms.
According to another aspect of the present
invention there is provided a mass spectrometer
comprising:
20 a mass filter for separating ions according to
their mass to charge ratio, the mass filter comprising a
plurality of electrodes wherein, in use, an AC or RF
voltages is applied to the electrodes in order to
radially confine ions with the mass filter and wherein
in use one or more transient DC voltages or one or more
transient DC voltage waveforms are progressively applied
to the electrodes so that:
(i) ions are moved towards a region of the mass
filter wherein at least one electrode has a first
potential such that at least some ions having first and
second different mass to charge ratios will pass across
the first potential whereas other ions having a third

CA 02447057 2003-10-28
- 9 -
different mass to charge ratio will not pass across the
first potential; and then
(ii) ions having the first and second mass-to
charge ratios are moved towards a region of the mass
filter wherein at least one electrode has a second
potential such that at least some ions having the first
mass to charge ratio will pass across the second
potential whereas other ions having the second different
mass to charge ratio will not pass across the second
potential.
The one or more transient DC voltages or the one or
more transient DC voltage waveforms and the first
potential are preferably such that at least 100, 200,
30 0, 40 0, 50 0, 60 0, 70 0, 80 0, 90 0 or 95 0 of the ions
having the first mass to charge ratio pass across the
first potential. The one or more transient DC voltages
or the one or more transient DC voltage waveforms and
the first potential are preferably such that at least
100, 200, 300, 400, 500, 600, 700, 80%, 90% or 950 of
the fans having the second mass to charge ratio pass
across the first potential. The one or more transient
DC voltages or the one or more transient DC voltage
waveforms and the first potential are preferably such
that at least 10 0, 20 0, 30 0, 40 0, 50 0, 60 0, 70%, 80 0,
900 or 950 of the ions having the third mass to charge
ratio do not pass across the first potential.
The one or more transient DC voltages or the one or
more transient DC voltage waveforms and the second
potential are preferably such that at least 10o, 200,
30 0, 40%, 50 0, 60%, 70 0, 80 0, 90~ or 95 0 of the ions
having the first mass to charge ratio pass across the
second potential. The on,e or more transient DC voltages
or the one or more transient DC voltage waveforms and

CA 02447057 2003-10-28
- 10 -
the second potential are preferably such that at least
0, 20 0, 30%, 40 0, 50%, ~0 0, 70 0, 80 a, 90 % or 95 % of
the ions having the second mass to charge ratio do not
pass across the second potential.
5 The one or more transient DC voltages or the one or
more transient DC voltage waveforms are preferably such
that at least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%,
90% or 95% of the ions having the second mass to charge
ratio exit the mass filter substantially before ions
10 having the first and third mass to charge ratios. The
one or more transient DC voltages or the one or more
transient DC voltage waveforms are preferably such that
at least 10%, 20%, 30%, 40%, 50~, 60%, 70%, 80%, 90% or
95% of the ions having the first and third mass to
charge ratios exit the mass filter substantially after
ions having the second mass to charge ratio.
A majority of the ions having the second mass to
charge ratio preferably exit the mass filter a time t
before a majority of the ions having the first and third
ion mobilities exit the mass filter, wherein t fall s
within a range selected from the group consisting of:
(i) < 1 us; (ii) 1--10 us; (iii) 10-50 us; (iv) 50-100
us; (v) 100-200 us; (vi) 200-300 us: (vii) 300-400 us;
(viii) 400-500 us; (ix) 500-600 us; (x) 600-700 us; (xi)
700-800 us; (xii) 800-900 us; and (xiii) 900-1000 ~s.
According to another embodiment t falls within a
range selected from the group consisting of: (i) 1.0-1.5
ms; (ii) 1.5-2.0 ms; (iii) 2.0-2.5 ms; (iv) 2.5-3.0 ms;
(v) 3.0-3.5 ms; (vi) 3.5-4.0 ms; (vii) 4.0-4.5 ms;
(viii) 4.5-5.0 ms; (ix) 5-10 ms; (x) 10-15 ms; (xi) 15-
20 ms; (xii) 20-25 ms; (xiii) 25-30 ms; (xiv) 30-35 ms;
(xv) 35-40 ms; (xvi) 40-45 ms; (xvii) 45-50 ms; (xviii)
50-55 ms; (xix) 55-60 ms; (xx) 60-65 ms; (xxi) 65-70 ms;

CA 02447057 2003-10-28
- 11 -
(xxii) 70-75 ms; (xxiii) 75-80 ms; (xxiv) 80-85 ms;
(xxv) 85-90 ms; (xxvi) 90-95 ms; (xxvii) 95-100 ms; and
(xxviii) > 100 ms.
The one or more transient DC voltages may create:
(i) a potential hill or barrier; (ii) a potential well;
(iii) a combination of a potential hill or barrier and a
potential well; (iv) multiple potential hills or
barriers; (v) multiple potential wells; or (vi) a
combination of multiple potential hills or barriers and
multiple potential wells.
The one or more transient DC voltage waveforms
preferably comprise a repeating waveform such as a
square wave.
The one or more transient DC voltage waveforms
preferably create a plurality of potential peaks or
wells separated by intermediate regions. The DC voltage
gradient in the intermediate regions may be zero or non-
zero and may be either positive or negative. The DC
voltage gradient in the intermediate regions may be
linear or non-linear. For example, the DC voltage
gradient in the intermediate regions may increase or
decrease exponentially.
The amplitude of the potential peaks or wells may
remain substantially constant or the amplitude of the
potential peaks or wells may become progressively larger
or smaller. The amplitude of the potential peaks or
wells may increase or decrease either linearly or non-
linearly.
In use an axial DC voltage gradient may be
maintained along at least a portion of the length of the
mass filter, wherein the axial voltage gradient varies
with time.

CA 02447057 2003-10-28
_ 12 _
The mass filter may comprise a first electrode held
at a first reference potential, a second electrode held
at a second reference potential, and a third electrode
held at a third reference potential, wherein at a first
time t1 a first DC voltage is supplied to the first
electrode so that the first electrode is held at a first
potential above or below the first reference potential,
at a second later time t2 a second DC voltage is
supplied to the second electrode so that the second
electrode is held at a second potential above or below
the second reference potential, and at a third later
time t3 a third DC voltage is supplied to the third
electrode so that the third electrode is held at a third
potential above or below the third reference potential.
Preferably, at the first time t1 the second
electrode is at the second reference potential and the
third electrode is at the third reference potential, at
the second time t2 the first electrode is at the first
potential and the third electrode is at the third
reference potential, and at the third time t3 the first
electrode is at the first potential and the second
electrode is at the second potential.
Alternatively, at the first time t1 the second
electrode is at the second reference potential and the
third electrode is at the third reference potential, at
the second time t2 the first electrode is no longer
supplied with the first DC voltage so that the first
electrode is returned to the first reference potential
and the third electrode is at the third reference
potential, and at the third time t3 the first electrode
is at the first reference potential the second electrode
is no longer supplied with the second DC voltage so that

CA 02447057 2003-10-28
- 13 -
the second electrode is returned to the second reference
potential.
The first, second and third reference potentials
are preferably substantially the same. Preferably, the
first, second and third DC voltages are substantially
the same. Preferably, the first, second and third
potentials are substantially the same.
The mass filter may comprise 3, 4, 5, 6, 7, 8, 9,
10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23,
24, 25, 26, 27, 28, 29, 30 or >30 segments, wherein each
segment comprises 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,
13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26,
27, 28, 29, 30 or >30 electrodes and wherein the
electrodes in a segment are maintained at substantially
the same DC potential. Preferably, a plurality of
segments are maintained at substantially the same DC
potential. Preferably, each segment is maintained at
substantially the same DC potential as the subsequent
nth segment wherein n is 3, 4, 5, 6, 7, 8, 9, 10, I1,
12, 13, 14, 1S, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,
26, 27, 28, 29, 30 or >30.
Ions are confined radially within the mass filter
by an AC or RF electric field. Ions are preferably
radially confined within the mass filter in a pseudo-
potential well and are moved axially by a real potential
barrier or well.
In use one or more additional AC or RF voltage
waveforms may be applied to at least some of the
electrodes so that ions are urged along at least a
portion of the length of the mass filter. Such A.C or RF
voltage waveforms are additional to the AC or RF
voltages which radially confine ions within the mass
filter.

CA 02447057 2003-10-28
- 14 -
The transit time of ions through the mass filter is
preferably selected from the group consisting of: (i)
less than or equal to 20 ms; (ii) less than or equal to
ms; (iii) less than or equal to 5 ms; (iv) less than
5 or equal to 1 ms; and (v) less than or equal to 0.5 ms.
The mass filter is preferably maintained at a
pressure such that substantially no viscous drag is
imposed upon ions passing through the mass filter. The
mean free path of ions passing through the mass filter
10 is therefore preferably greater, further preferably
substantially greater, than the length of the mass
filter.
In use the one or more transient DC voltages or the
one or more transient DC voltage waveforms are
preferably initially provided at a first axial position
and are then subsequently provided at second, then third
different axial positions along the mass filter.
The one or more transient DC voltages or the one or
more transient DC voltage waveforms preferably move from
one end of the mass filter to another end of the mass
filter so that at least some ions are urged along the
mass filter.
The one or more transient DC voltages or the one or
more transient DC voltage waveforms preferably have at
least 2, 3, 4, 5, 6, 7, 8, 9 or 10 different amplitudes.
The amplitude of the one or more transient DC
voltages or the one or more transient DC voltage
waveforms may remain substantially constant with time or
alternatively the amplitude of the one or more transient
DC voltages or the one or more transient DC voltage
waveforms may vary with time. For example, the
amplitude of the one or more transient DC voltages ox
the one or more transient DC voltage waveforms may

CA 02447057 2003-10-28
- 15 --
either: (i) increase with time; (ii) increase then
decrease with time; (iii) decrease with time; or (iv)
decrease then increase with time.
The mass filter may comprise an upstream entrance
region, a downstream exit region and an intermediate
region, wherein: in the entrance region the amplitude of
the one or more transient DC voltages or the one or more
transient DC voltage waveforms has ~. first amplitude, in
the intermediate region the amplitude of the one or more
transient DC voltages or the one or more transient DC
voltage waveforms has a second amplitude, and in the
exit region the amplitude of the one or more transient
DC voltages or the one or mare transient DC voltage
waveforms has a third amplitude.
The entrance and/or exit region preferably comprise
a proportion of the total axial length of the mass
filter selected from the group consisting of: (i) < 50;
(ii) 5-10%; (iii) 10-150; (iv) 15-20%; (v) 20-25%: (vi)
25-30%; (vii) 30-35%; (viii) 35-40%,. and (ix) 40-45%.
The first and/or third amplitudes may be
substantially zero and the second amplitude may be
substantially non-zero. Preferably,, the second
amplitude is larger than the first amplitude and/or the
second amplitude is larger than the third amplitude.
The one or more transient DC voltages or the one or
more transient DC voltage waveforms preferably pass in
use along the mass filter with a first velocity.
Preferably, the first velocity: (i) remains
substantially constant; (ii) varies; (iii) increases;
(iv) increases then decreases; (v) decreases; (vi)
decreases then increases; (vii) reduces to substantially
zero; (viii) reverses direction; or (ix) reduces to
substantially zero and then reverses direction.

CA 02447057 2003-10-28
- 16 -
The one or more transient DC voltages or the one or
more transient DC voltage waveforms preferably causes at
least some ions within the mass filter to pass along the
mass filter with a second different velocity.
Preferably, the one or more transient DC voltages or the
one or more transient DC voltage waveforms causes at
least some ions within the mass filter to pass along the
mass filter with a third different velocity.
Preferably, the one or more transient DC voltages or the
one or more transient DC voltage waveforms causes at
least some ions within the mass filter to pass along the
mass filter with a fourth different velocity.
Preferably, the one or more transient DC voltages or the
one or more transient DC voltage waveforms causes at
least some ions within the mass filter to pass along the
mass filter with a fifth different velocity.
The second and/or the third and/or the fourth
and/or the fifth velocities are preferably at least
1, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90,
95 or 100 m/s faster or slower than the first velocity.
The first velocity is preferably selected from the
group consisting of: (i) 10-250 m/s; (ii) 250-500 m/s;
(iii) 500-750 m/s; (iv) 750-1000 m/s: (v) 1000-1250 m/s;
(vi) 1250-1500 m/s; (vii) 1500-1750 m/s; (viii) 1750-
2000 m/s; (ix) 2000-2250 m/s; (x) 2250-2500 m/s; (xi)
2500-2750 m/s; (xii) 2750-3000 m/s; (xiii) 3000-3250
m/s; (xiv) 3250-3500 m/s; (xv) 3500-3750 m/s; (xvi)
3750-4000 m/s; (xvii) 4000-4250 m/s; (xviii) 4250-4500
m/s; (xix) 4500-4750 m/s; (xx) 4750-5000 m/s; (xxi)
5000-5250 m/s; (xxii) 5250-5500 m/s; (xxiii) 5500-5750
m/s; (xxiv) 5750-6000 m/s; and (xxv) > 6000 m/s.
According to a less preferred embodiment the first
velocity may be < 10 m/s.

CA 02447057 2003-10-28
- 17 -
The second and/or the third and/or the fourth
and/or the fifth different velocities are preferably
selected from the group consisting of: (i) 10-250 m/s;
(ii) 250-500 m/s; (iii) 500-750 m/s; (iv) 750-1000 m/s;
(v) 1000-1250 m/s; (vi) 1250-1500 m/s; (vii) 150 0-1750
m/s; (viii) 1750-2000 m/s; (ix) 2000-2250 m/s; (x) 2250-
2500 m/s; (xi) 2500-2750 m/s; (xii) 2750-3000 m/s;
(xiii) 3000-3250 m/s; (xiv) 3250-3500 m/s; (xv) 3500-
3750 m/s; (xvi) 3750-4000 m/s; (xvii) 4000-4250 m/s;
(xviii) 4250-4500 m/s; (xix) 4500-4750 m/s; (xx) 4750-
5000 m/s; (xxi) 5000-5250 m/s; (xxii) 5250-5500 m/s;
(xxiii) 5500-5750 m/s; (xxiv) 5750-6000 m/s; and (xxv) >
6000 m/s. According to a less preferred embodiment the
second and/or third and/or fourth and/or fifth velocity
may be < 10 m/s.
The one or more transient DC voltages or the one or
more transient DC voltage waveforms preferably have a
frequency, and wherein the frequency: (i) remains
substantially constant; (ii) varies; (iii) increases;
(iv) increases then decreases; (v) decreases; or (vi)
decreases then increases.
The one or more transient DC voltages or the one or
more transient DC voltage waveforms preferably have a
wavelength, and wherein the wavelength: (i) remains
substantially constant; (ii) varies; (iii) increases;
(iv) increases then decreases; (v) decreases; or (vi)
decreases then increases.
Two or more transient DC voltages or two or more
transient DC voltage waveforms may pass simultaneously
along the mass filter. The two or more transient DC
voltages or the two or more transient DC voltage
waveforms may be arranged to move: (i) in the same

CA 02447057 2003-10-28
- 18 -
direction; (ii) in opposite directions; (iii) towards
each other; or (iv) away from each other.
The one or more transient DC voltages or the one or
more transient DC voltage waveforms may pass along the
mass filter and preferably at least one substantially
stationary transient DC potential voltage or voltage
waveform is provided at a position along the mass
filter.
The one or more transient DC voltages or the one or
more transient DC voltage waveforms are preferably
repeatedly generated and passed in use along the mass
filter, and wherein the frequency of. generating the one
or more transient DC voltages or the one or more
transient DC voltage waveforms: (i) remains
substantially constant; (ii) varies; (iii) increases;
(iv) increases then decreases; (v) decreases; or (vi)
decreases then increases.
A continuous beam of ions may be received at an
entrance to the mass filter or alternatively packets of
ions may be received at the entrance to the mass filter.
Pulses of ions preferably emerge from an exit of the
mass filter. The mass spectrometer preferably further
comprises an ion detector, the ion detector being
arranged to be substantially phase locked in use with
the pulses of ions emerging from the exit of the mass
filter. The mass spectrometer may further comprise a
Time of Flight mass analyser comprising an electrode for
injecting ions into a drift region, the electrode being
arranged to be energised in use in a substantially
synchronised manner with the pulses of ions emerging
from the exit of the mass filter.
The mass filter is preferably selected from the
group consisting of: (i) an ion funnel comprising a

CA 02447057 2003-10-28
- 19 -
plurality of electrodes having apertures therein through
which ions are transmitted in use, wherein the diameter
of the apertures becomes progressively smaller or
larger; (ii) an ion tunnel comprising a plurality of
electrodes having apertures therein through which ions
are transmitted in use, wherein the diameter of the
apertures remains substantially constant; and (iii) a
stack of plate, ring or wire loop electrodes.
The mass filter preferably comprises a plurality of
electrodes, each electrode having an aperture through
which ions are transmitted in use. Each electrode
preferably has a substantially circular aperture. Each
electrode preferably has a single aperture through which
ions are transmitted in use.
The diameter of the apertures of at least 100, 20%,
30%, 40 a, 50%, 60 0, 70%, 80%, 90 0 or 95 0 of the
electrodes forming the mass filter is preferably
selected from the group consisting ofe (i) less than or
equal to 10 mm; (ii) less than or equal to 9 mm; (iii)
less than or equal to 8 mm; (iv) less than or equal to 7
mm; (v) less than or equal to 6 mm; (vi) less than or
equal to 5 mm; (vii) less than or equal to 4 mm; (viii)
less than or equal to 3 mm; (ix) less than or equal to 2
mm; and (x) less than or equal to 1 mm.
At least 10%, 20°-0, 30%, 40 0, 50 0, 60°-0, 70 0, 80 0,
90% or 95% of the electrodes forming the mass filter
preferably have apertures which are substantially the
same size or area.
According to a less preferred embodiment the mass
filter may comprise a segmented rod set.
The mass filter preferably consists of: (i) 20-20
electrodes; (ii) 20-30 electrodes; (iii) 30-40
electrodes; (iv) 40-50 electrodes; (v) 50-60 electrodes;

CA 02447057 2003-10-28
- 20 -
(vi) 60-70 electrodes; (vii) 70-80 electrodes; (viii)
80-90 electrodes; (ix) 90-100 electrodes; (x) 100-110
electrodes; (xi) 110-120 electrodes; (xii) 120-130
electrodes; (xiii) 130-240 electrodes; (xiv) 140-150
electrodes; (xv) more than 150 electrodes; or (xvi) >- 15
electrodes. According to a less preferred embodiment
the mass filter may comprise 7-10 electrodes. A mass
filter comprising at least 15 electrodes is preferred.
The thickness of at least 10o, 200, 30o, 400, 500,
60~, 70~, 800, 90~ or 950 of the electrodes is
preferably selected from the group consisting of: (i)
less than or equal to 3 mm; (ii) less than or equal to
2.5 mm; (iii) less than or equal to 2.0 mm; (iv) less
than or equal to 1.5 mm; (v) less than or equal to 1.0
mm; and (vi) less than or equal to 0.5 mm.
The mass filter preferably has a length selected
from the group consisting of: (i) less than 5 cm; (ii)
5-10 cm; (iii) 10-15 cm; (iv) 15-20 cm; (v) 20-25 cm;
(vi) 25-30 cm; and (vii) greater than 30 cm.
At least 20 0, 20 o, 30 0, 40%, 50 0, 60 o, 70 0, 80 0,
90%, or 950 of the electrodes are preferably connected
to both a DC and an AC or RF voltage supply. According
to the preferred embodiment axially adjacent electrodes
are supplied with AC or RF voltages having a phase
difference of 180°.
The mass spectrometer may comprise an ion source
selected from the group consisting of: (i) Electrospray
("ESI") ion source; (ii) Atmospheric Pressure Chemical
Ionisation ("APCI") ion source; (iii) Atmospheric
Pressure Photo Ionisation ("APPI") ion source; (iv)
Matrix Assisted Laser Desorption Ionisation (°'MALDI°')
ion source; (v) Laser Desorption Ionisation ("LDI") ion
source; (vi) Inductively Coupled Plasma ("ICP") ion

CA 02447057 2003-10-28
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source; (vii) Electron Impact ('°EI) ion source; (viii)
Chemical Ionisation ('°CI") ion source; (ix) a Fast Atom
Bombardment ("FAB") ion source; and (x) a Ziquid
Secondary Ions Mass Spectrometry ("LSIMS") ion source.
The ion source may be either_ a continuous or a pulsed
ion source.
According to another aspect of the present
invention there is provided a mass filter for separating
ions according to their mass to charge ratio, the mass
filter comprising at least seven electrodes wherein, in
use, an AC or RF voltage is applied to the electrodes in
order to radially confine ions within the mass filter
and wherein in use one or more transient DC voltages or
one or more transient DC voltage waveforms are
progressively applied to the electrodes so that at least
some ions having a first mass to charge ratio are
separated from other ions having a second different mass
to charge ratio which remain substantially radially
confined within the mass filter.
According to another aspect of the present
invention there is provided a mass filter for separating
ions according to their mass to charge ratio, the mass
filter comprising at least seven electrodes wherein, in
use, an AC or RF voltage is applied to the electrodes in
order to radially confine ions within the mass filter
and wherein in use one or more transient DC voltages or
one or more transient DC voltage waveforms are
progressively applied to the electrodes so that ions are
moved towards a region of the mass filter wherein at
least one electrode has a potential such that at least
some ions having a first mass to charge ratio will pass
across the potential whereas other ions having a second
different mass to charge ratio will not pass across the

CA 02447057 2003-10-28
- 22 -
potential but will remain substantially radially
confined with the mass filter.
According to another aspect of the present
invention there is provided a mass filter for separating
ions according to their mass to charge ratio, the mass
filter comprising a plurality of electrodes wherein, in
use, an AC or RF voltage is applied to the electrodes in
order to radially confine ions within the mass filter
and wherein in use one or more transient DC voltages or
one or more transient DC voltage waveforms are
progressively applied to the electrodes so that:
(i) ions are moved towards a region of the mass
filter wherein at least one electrode has a first
potential such that at least some ions having first and
second different mass to charge ratios will pass across
the first potential whereas other~ions having a third
different mass to charge ratio will not pass across the
first potential; and 'then
(ii) ions having the first and second mass to
charge ratios are moved towards a region of the mass
filter wherein at least one electrode has a second
potential such that at least some ions having the first
mass to charge ratio will pass across the second
potential whereas other ions having the second different
mass to charge ratio will not pass across the second
potential.
According to another aspect of the present
invention, there is provided a method of mass
spectrometry comprising:
receiving ions in a mass filter comprising at least
seven electrodes wherein an AC or RF voltage is applied
to the electrodes in order to radially confine ions
within the mass filter; and

CA 02447057 2003-10-28
- 23
progressively applying to the electrodes one or
more transient DC voltages or one or more transient DC
voltage waveforms so that at least some ions having a
first mass to charge ratio are separated from other ions
having a second different mass to charge ratio which
remain substantially radially confined within the mass
filter.
According to another aspect of the present
invention there is provided a method of mass
spectrometry comprising:
receiving ions in a mass filter comprising at least
seven electrodes wherein an AC or RF voltage is applied
to the electrodes in order to radially confine~ions
within the mass filter; and
progressively applying to the electrodes one or
more transient DC voltages or one or more transient DC
voltage waveforms so that ions are moved towards a
region of the mass filter wherein at least one electrode
has a potential such that at least some ions having a
first mass to charge ratio will pass across the
potential whereas other ions having a second different
mass to charge ratio will not pass across the potential
but will remain substantially radially confined within
the mass filter.
According to another aspect of the present
invention there is provided a method of mass
spectrometry comprising:
receiving ions in a mass filter comprising a
plurality of electrodes wherein an AC or RF voltage is
applied to the electrodes in order to radially confine
ions within the mass filter;
progressively applying to the electrodes one or
more transient DC voltages or one or more transient DC

CA 02447057 2003-10-28
- 24 -
voltage waveforms so that ions are moved towards a
region of the mass filter wherein at least one electrode
has a first potential such that at least some ions
having a first and second different mass to charge
ratios will pass across the first potential whereas
other ions having a third different mass to charge ratio
will not pass across the first potential; and then
progressively applying to the electrodes one or
mare transient DC voltages or one or more transient DC
voltage waveforms so that ions having the first and
second mass to charge ratios are moved towards a region
of the mass filter wherein at least one electrode has a
second potential such that a~t least some ions having the
first mass to charge ratio will pass across the second
potential whereas other ions having the second different
mass to charge ratio will not pass across the second
potential.
According to another aspect of the present
invention there is provided a method of mass to charge
ratio separation comprising:
receiving ions in a mass filter comprising at least
seven electrodes wherein an AC or RF voltage is applied
to the electrodes in order to radially confine ions
within the mass filter; and
progressively applying to the electrodes one or
more transient DC Voltages or one or more transient DC
voltage waveforms so that at least some ions having a
first mass to charge ratio are separated from other ions
having a second different mass to charge ratio which
remain substantially radially confined within the mass
filter.

CA 02447057 2003-10-28
- 25 -
According to another aspect of the present
invention there is provided a method of mass to charge
ratio separation comprising:
receiving ions in a mass filter comprising at least
seven electrodes wherein an AC or RF voltage is applied
to the electrodes in order to radially confine ions
within the mass filter; and
progressively applying to the electrodes one or
more transient DC voltages or one or more transient DC
voltage waveforms so that ions are moved towards a
region of the mass filter wherein at least one electrode
has a potential such that at least some sons having a
first mass to charge ratio will pass across the
potential whereas other ions having a second different
mass to charge ratio will not pass across the potential
but will remain substantially radially confined within
the mass filter.
According to another aspect of the present
invention there is provided a method of mass to charge
ratio separation comprising:
receiving ions in a mass filter comprising a
plurality of electrodes an AC or RF voltages is applied
to the electrodes in order to radially confine ions
within the mass filter;
progressively applying to the electrodes one or
more transient DC voltages or one or more transient DC
voltage waveforms so that ions are moved towards a
region of the mass filter wherein at least one electrode
has a first potential such that at least some ions
having a first and second different mass to charge
ratios will pass across the .first pot ential whereas
other ions having a third different mass to charge ratio
will not pass across the first potential; and then

CA 02447057 2003-10-28
- 26 -
progressively applying to the electrodes one or
more transient DC voltages or one or more transient DC
voltage waveforms so that ions having the first and
second mass to charge ratios are moved towards a region
of the mass filter wherein at least one electrode has a
second potential such that at least some ions having the
first mass to charge ratio will pass across the second
potential whereas other ions having the second different
mass to charge ratio will not pass across the second
potential.
According to another aspect of the present
invention there is provided a mass filter wherein ions
separate within the mass filter according to their mass
to charge ratio and assume different essentially static
or equilibrium axial positions along the length of the
mass filter. Preferably, ions having mass to charge
ratios within a first range are stored in a first axial
trapping region whereas ions having mass to charge
ratios within a second different range are stored in a
second different axial trapping region.
The mass filter preferably comprises a plurality of
electrodes wherein, in use, an AC or RF voltage is
applied to the electrodes in order to radially confine
ions within the mass filter. Preferably, one or more
transient DC voltages or one or more transient DC
voltage waveforms are progressively applied to the
electrodes so as to urge at least some ions in a first
direction. Preferably, a DC voltage gradient acts to
urge at least some ions in a second direction, the
second direction being opposed to the first direction.
The peak amplitude of the one or more transient DC
voltages or the one or more transient DC voltage

CA 02447057 2003-10-28
- 27 -
waveforms preferably remains substantially constant or
reduces along the length of the mass filter.
The DC voltage gradient may progressively increase
along the length of the mass filter.
Once ions have assumed essentially static or
equilibrium axial positions along the length of the mass
filter at least some of the ions may then be arranged to
be moved towards an exit of the mass filter. At least
some of the ions may be arranged to be moved towards an
exit of the mass filter by: (i) reducing or increasing
an axial DC voltage gradient; (ii) reducing or
increasing the peak amplitude of the one or more
transient DC voltages or the one or more transient DC
voltage waveforms; (iii) reducing or increasing the
I5 velocity of the one or more transient DC voltages or the
one or more transient DC voltage waveforms; or (iv)
reducing or increasing the pressure within the mass
filter.
According to another aspect of the present
invention there is provided a mass spectrometer
comprising a mass filter as described above,
According to another aspect of the present
invention there is provided a method of mass to charge
ratio separation comprising causing ions to separate
within a mass filter and assume different essentially
static or equilibrium axial positions along the length
of the mass filter.
According to another aspect of the present
invention there is provided a method of mass
spectrometry comprising any of the methods of mass to
charge ratio separation as described above.

CA 02447057 2003-10-28
28 -
Various embodiments of the present invention will
now be described, by way of example only, and with
reference to the accompanying drawings in which:
Fig. 1 shows the r and z co-ordinates of a
preferred rotationally symmetric ring guide or ion
tunnel mass filter;
Fig. 2 shows ions having different mass to charge
ratios in a state of equilibrium within a preferred ion
tunnel mass filter;
Fig. 3 shows a DC potential being applied to an
electrode at one end of the preferred mass filter;
Fig. 4 shows the DC potential being progressively
applied to electrodes further along the length of the
mass filter and having the effect of sweeping or
preferentially accelerating ions having relatively low
mass to charge ratios whilst leaving behind or
substantially relatively unaffecting ions having
relatively higher mass to charge ratios;
Fig. S shows ions which have relatively low mass to
charge ratios at the point of being ejected from a mass
filter according to the preferred embodiment whilst
other ions having relatively higher mass to charge
ratios remain trapped within the mass filter;
Fig. 6 shows ions at equilibrium in a preferred
mass filter being operated in a bandpass mode of
operation wherein two or more axial trapping regions are
formed along the length of the mass filter;
Fig. 7 shows a subsequent stage in a bandpass mode
of operation wherein relatively low mass to charge ratio
ions which have been swept into a second stage of the
mass filter are about to experience a DC potential being
applied to electrodes and moving in an opposite
direction; and

CA 02447057 2003-10-28
- 29 -
Fig. 8 shows a yet further stage in a bandpass mode
of operation wherein ions having an intermediate mass to
charge ratio have been separated from ions having
relatively higher and lower mass to charge ratios.
According to the preferred embodiment a mass filter
comprising an ion tunnel ion guide or less preferably an
ion funnel ion guide is provided. Ion tunnel and ion
funnel ion guides comprise a plurality of electrodes
having apertures through which ions are transmitted in
use. With ion tunnel ion guides the size of the
apertures are preferably all substantially the same,
whereas for ion funnel ion guides the size of the
apertures preferably becomes progressively smaller.
The application of an AC or RF electric field to
the electrodes of an ion tunnel ion guide produces an
effective potential which is related to frequency of.the
radially confining AC or RF voltage and the ion guide
geometry itself and is given by:
v* - qz~22 2 ~ti (Y)cos2 z+Io (i~)sinz i~llo (~~o)
4mSZ zo
Y=rlza
ro -ralzo
zo = z l za
where Vo is amplitude of the applied AC or RF voltage, S2
is the angular frequency of the applied AC or RF
voltage, m is the mass of the ion, q is the charge of
the ion, and I1 and Io are modified Bessel functions.
The parameters ro and zo are shown in more detail in Fig.
1.
The application of an AC or RF voltage to the
electrodes of the mass filter is such that adjaoent

CA 02447057 2003-10-28
- 30 -
electrodes are preferably held in antiphase. This leads
to radial confinement of the ions around the central
longitudinal axis.
According to less preferred embodiments the mass
filter may comprise, for example, a segmented quadrupole
(or other multipole) rod set wherein each segment of the
rod set may be maintained at separate DC potentials.
The mass filter is preferably maintained at a
pressure such that the probability of an ion
experiencing a collision with a gas molecule whilst
travelling through the mass filter is substantially
negligible. The mass filter is therefore preferably
maintained during a mass filtering mode of operation at
a pressure < 10-4 mbar. The mean free path of ions
passing through the mass filter when operated in a mass
filtering mode of operation is preferably greater or
substantially greater than the length of the mass
filter. However, gas may have been previously present
in the mass filter at pressures >10-4 mbar for a
sufficient time in order for ions entering the mass
- filter to have their ion motion collisionally damped so
that the ions become thermalised and/or collisionally
focussed.
According to the preferred embodiment ions from an
ion source, such as for example an Electrospray or MALDI
ion source, enter the mass filter and are radially
confined therewithin. One or more of the end electrodes
2a,2b of the mass filter 1 as shown in Fig. 2 are
preferably maintained at a slight positive voltage
relative to the other electrodes 3 so that negatively
charged ions will be effectively trapped axially within
the mass filter l as they will be unable to surmount the
potential barrier at the ends of the mass filter 1.

CA 02447057 2003-10-28
- 31 -
After a-certain period of time equilibrium will be
reached wherein ions having differing mass to charge
ratios will be substantially equally distributed
throughout the mass filter 1 as shown in Fig. 2. The
preferred ion tunnel mass filter 1 comprises a plurality
of electrodes 3 each having an aperture through which
ions may be transmitted in use. Adjacent electrodes 3
are preferably connected to opposite phases of an AC or
RF voltage supply so that ions are radially confined
within the mass filter 1 by the resultant pseudo-
potential well generated by the AC or RF voltage applied
to the electrodes 3. The mass filter 1 is preferably
held at a suitably low pressure so that ions traversing
the length if the mass filter 1 effectively do not
undergo collisions with gas molecules within the mass
filter 2. One or more end electrodes 2a,2b of the mass
filter 1 are preferably maintained at a slight positive
voltage relative to the other electrodes 3 so that ions
once entering the mass filter 1 are effectively trapped
within the mass filter 1 and are unable to surmount the
potential barrier at one or both ends. After a certain
period of time equilibrium may be reached within the
mass filter 1 so that ions of all masses and mass to
charge ratios are substantially equally distributed
along the length of the mass filter I.
As shown in Fig. 3, according to one embodiment a
DC voltage pulse Vg having an amplitude ~ may be applied
to the first electrode of the ion guide adjacent to one
of the end electrodes 2a such that some ions will be
accelerated by the applied voltage pulse Vg along the
length of the mass filter 1 towards the opposite end.
The electric field caused by the applied voltage decays

CA 02447057 2003-10-28
rapidly to a negligible value within a few electrode
spacings.
The voltage pulse Vg is then preferably rapidly
switched to the next adjacent electrode. An ion which
has had enough time to drift at least one electrode
spacing will either have been accelerated so that the
ion has already made substantial progress along the
length of the mass filter 1 or at the very least the ion
will have moved sufficiently far so to experience the
same force again and hence will continue to move along
the length of the mass filter I in the direction in
which the DC voltage pulse Vg being applied to the
electrodes 3 is moving. However, ions having a
relatively high mass to charge ratio may either be
substantially unaffected by the electric field or at the
very least will nat have had sufficient time to have
drifted far enough along the length of the mass filter 1
in order to see the influence of the voltage pulse Vg
when it switched to the next adjacent electrode.
Accordingly, these relatively higher mass to charge
ratio ions will be effectively left behind or otherwise
substantially unaffected (or at the very least affected
to a lesser degree) as the travelling DC voltage pulse
Vg or voltage waveform traverses along the length of the
mass filter 1.
The DC voltage pulse Vg is preferably progressively
switched to the electrodes along the length of the mass
filter 1 from electrode to electrode sweeping.those ions
with a sufficiently law mass to charge ratio with it or
accelerating such ions ahead of it. As shown in Fias. 4
and 5, the mass filter 1 in this mode of operation acts
as a low pass mass to charge ratio filter so that ions
having mass to charge ratios lower than a certain value

CA 02447057 2003-10-28
- 33 -
may be preferably ejected from the mass filter 1 whereas
ions having substantially higher mass to charge ratios
preferably remain substantially trapped within the mass
filter 1 by the combination of radial confinement due to
the AC or RF voltages applied to the electrodes 3 and
axial confinement due to one or more DC barrier
potentials being applied to one or both of the end
electrodes 2a,2b.
Once a first bunch or group of ions having a
2Q relatively low mass to charge ratio have been ejected
from the mass filter I as shown in Fig. 5, the sweep
time TsWeep of the DC voltage pulse V~ being applied to
the electrodes 3 may then preferably be reduced so that
ions having a slightly higher (i.e. intermediate) mass
to charge ratio will then be preferentially accelerated.
Accordingly, ions having an intermediate mass to charge
ratio can then be preferably subsequently ejected from
the mass filter 1. By gradually further reducing the
sweep time TsWeei, a Complete mass to charge ratio scan can
be built up until the mass filter 1 is substantially
empty of ions.
According to an alternative and/or additional
embodiment, the amplitude of the DC voltage pulse Vg or
voltage waveform applied to the electrodes 3 may be
progressively increased with each sweep thereby
collecting or preferentially.accelerating ahead ions
having progressively higher mass to charge ratios in
substantially the same mariner as if the sweep time were
increased.
According to another embodiment a bandpass mode of
operation may be performed wherein tons having mass to
charge ratios within a particular mass to charge ratio
range may be isolated within the mass filter 1 and then

CA 02447057 2003-10-28
- 34 -
subsequently ejected from the mass filter 1 whilst ions
having relatively higher and lower mass to charge ratios
may remain substantially trapped within the mass filter
1. The bandpass mode of operation is preferably
achieved by creating two or more axial trapping regions
5,6 along the length of the mass filter 1 as shown in
Fig. 6 by applying a relatively low DC voltage to an
electrode 4 at an intermediate position along the length
of the mass filter 1. Ions are then preferably swept
towards the intermediate electrode 4 by the application
of a DC voltage pulse Vg or voltage waveform which is
progressively applied to the electrodes in a first axial
trapping region 5. As shown in Fig. 7 this will result
in ions having mass to charge ratios less than a certain
value being swept through the first axial trapping
region 5, through or past the intermediate electrode 4
and into a second preferably empty axial trapping region
6. A second travelling DC voltage V'g or voltage
waveform is then preferably applied to the electrodes in
the second axial trapping region 6 in the reverse
direction so that ions having a relatively low mass to
charge ratio are then accelerated or swept back towards
the intermediate electrode 4. These low mass to charge
ratio ions then preferably pass back into the first
axial trapping region 5 whilst ions having a relatively
higher mass to charge ratios remain trapped within the
second axial trapping region 6. Accordingly, ions
having an overal7_ intermediate mass to charge ratio
remain in the second axial trapping region as shown in
Fig. 8 and can then be ejected from the mass filter 1.
The amplitude of the reverse sweep travelling DC
voltage V'g or voltage waveform is preferably higher
than the amplitude of the DC voltage Vg or voltage

CA 02447057 2003-10-28
- 35 -
waveform applied to the electrodes 3 when ions were
swept from the first axial trapping region 5 into the
second axial trapping region 6. Preferably, the
amplitude of the DC voltage V'g or voltage waveform
applied to the electrodes 3 for the reverse sweep is
increased by a factor of approximately nine since the
relative velocity between the DC voltage Vg or voltage
waveform applied to the electrodes 3 and the ions has
increased from vo (the velocity of the DC potential
20 being initially applied to the electrodes) to 3v~ as the
ions are accelerated to 2vo during the first pass and
are then approached by a second DC potential travelling
at a velocity v~ again. The potential required to just
prevent an ion from traversing throt,~gh it is
proportional to the relative velocity squared hence the
factor of nine.
Although the present invention has been described
with reference to preferred embodiments, it will be
understood by those skilled in the art that various
changes in form and detail may be made without departing
from the scope of the invention as set forth in the '
accompanying claims.

Representative Drawing
A single figure which represents the drawing illustrating the invention.
Administrative Status

For a clearer understanding of the status of the application/patent presented on this page, the site Disclaimer , as well as the definitions for Patent , Administrative Status , Maintenance Fee  and Payment History  should be consulted.

Administrative Status

Title Date
Forecasted Issue Date Unavailable
(22) Filed 2003-10-28
(41) Open to Public Inspection 2004-05-08
Dead Application 2009-10-28

Abandonment History

Abandonment Date Reason Reinstatement Date
2008-10-28 FAILURE TO REQUEST EXAMINATION
2008-10-28 FAILURE TO PAY APPLICATION MAINTENANCE FEE

Payment History

Fee Type Anniversary Year Due Date Amount Paid Paid Date
Application Fee $300.00 2003-10-28
Registration of a document - section 124 $100.00 2004-03-29
Maintenance Fee - Application - New Act 2 2005-10-28 $100.00 2005-10-20
Maintenance Fee - Application - New Act 3 2006-10-30 $100.00 2006-10-04
Maintenance Fee - Application - New Act 4 2007-10-29 $100.00 2007-10-03
Owners on Record

Note: Records showing the ownership history in alphabetical order.

Current Owners on Record
MICROMASS UK LIMITED
Past Owners on Record
BATEMAN, ROBERT HAROLD
GILES, KEVIN
HOYES, JOHN BRIAN
PRINGLE, STEVE
WILDGOOSE, JASON LEE
Past Owners that do not appear in the "Owners on Record" listing will appear in other documentation within the application.
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Document
Description 
Date
(yyyy-mm-dd) 
Number of pages   Size of Image (KB) 
Abstract 2003-10-28 1 21
Description 2003-10-28 35 1,715
Claims 2003-10-28 32 1,375
Cover Page 2004-04-13 1 39
Drawings 2003-10-28 5 98
Representative Drawing 2003-12-16 1 11
Assignment 2003-10-28 3 133
Correspondence 2003-12-02 1 26
Assignment 2004-03-29 3 89
Correspondence 2006-01-10 1 16
Fees 2006-10-04 1 28
Fees 2007-10-03 1 28