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Patent 2477878 Summary

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(12) Patent: (11) CA 2477878
(54) English Title: PEPTIDES SELECTIVELY LETHAL TO MALIGNANT AND TRANSFORMED MAMMALIAN CELLS
(54) French Title: PEPTIDES SELECTIVEMENT LETAUX POUR DES CELLULES DE MAMMIFERES TRANSFORMEES ET MALIGNES
Status: Expired
Bibliographic Data
(51) International Patent Classification (IPC):
  • C07K 19/00 (2006.01)
  • A61K 38/10 (2006.01)
  • A61K 38/16 (2006.01)
  • A61K 38/17 (2006.01)
  • A61P 35/00 (2006.01)
  • C07K 7/08 (2006.01)
  • C07K 14/47 (2006.01)
  • A61K 38/00 (2006.01)
(72) Inventors :
  • PINCUS, MATTHEW R. (United States of America)
(73) Owners :
  • THE RESEARCH FOUNDATION OF STATE UNIVERSITY OF NEW YORK (United States of America)
(71) Applicants :
  • THE RESEARCH FOUNDATION OF STATE UNIVERSITY OF NEW YORK (United States of America)
(74) Agent: OSLER, HOSKIN & HARCOURT LLP
(74) Associate agent:
(45) Issued: 2013-05-14
(86) PCT Filing Date: 2003-03-12
(87) Open to Public Inspection: 2003-12-24
Examination requested: 2008-03-03
Availability of licence: N/A
(25) Language of filing: English

Patent Cooperation Treaty (PCT): Yes
(86) PCT Filing Number: PCT/US2003/007687
(87) International Publication Number: WO2003/105880
(85) National Entry: 2004-09-01

(30) Application Priority Data:
Application No. Country/Territory Date
60/363,785 United States of America 2002-03-12

Abstracts

English Abstract




The present invention provides peptides corresponding to all or a portion of
amino acid residues 12-26 of human p53 protein, which peptides are lethal to
malignant or tranformed cells when fused to a membrane-penetrating leader
sequence. The subject peptides are thus useful in treating neoplastic disease
in an animal, preferably a human. Also provided are pharmaceutical
compositions comprising the subject peptides admixed with a pharmaceutical
acceptable carrier. Methods of treating neoplastic disease in a patient by
administering a subject peptide fused at its carboxy terminal end to a
membrane-penetrating leader sequence are also provided.


French Abstract

L'invention concerne des peptides correspondant à tous ou à une partie des résidus d'acides aminés 12-26 de la protéine p53 humaine, lesquels peptides étant létaux pour des cellules transformées ou malignes, lorsqu'elles sont fusionnées à une séquence de tête de pénétration membranaire. Les peptides de l'invention sont ainsi utiles dans le traitement d'une maladie néoplastique chez l'animal, de préférence chez l'humain. L'invention concerne des compositions pharmaceutiques contenant lesdits peptides mélangés à un support pharmaceutiquement acceptable. L'invention concerne des méthodes de traitement d'une maladie néoplastique chez un patient, lesquelles méthodes consistant à administrer un peptide fusionné à son extrémité carboxy terminale à une séquence de tête de pénétration membranaire.

Claims

Note: Claims are shown in the official language in which they were submitted.


WHAT IS CLAIMED IS:
1. A composition comprising a peptide, the peptide consisting of the amino
acid
sequence: PPLSQETFSDLWKLL (SEQ ID NO:1) fused on its amino terminal end to a
membrane-penetrating leader sequence, and a pharmaceutically acceptable
carrier.

2. A composition comprising a peptide, the peptide consisting of the amino
acid
sequence: PPLSQETFS (SEQ ID NO:2) fused on its amino terminal end to a
membrane penetrating leader sequence, and a pharmaceutically acceptable
carrier.

3. A composition comprising a peptide, the peptide consisting of the amino
acid
sequence: ETFSDLWKLL (SEQ ID NO:3) fused on its amino terminal end to a
membrane penetrating leader sequence, and a pharmaceutically acceptable
carrier.

4. A composition comprising at least one peptide consisting of the amino acid
sequence: PPLSQETFSDLWKLL (SEQ ID NO:1), PPLSQETFS (SEQ ID NO:2), or
ETFSDLWKLL (SEQ ID NO:3), said peptide fused on its amino terminal end to a
membrane penetrating leader sequence, and a pharmaceutically acceptable
carrier.
5. The composition of any one of claims 1-4 wherein the membrane-penetrating
leader sequence comprises the amino acid sequence: KKWKMRRNQFWVKVQRG
(SEQ ID NO:4).

25

6. The composition of any one of claims 1-4 wherein the membrane-penetrating
leader sequence comprises positively charged residues.

7. The composition of any one of claims 1-4 wherein the membrane penetrating
leader sequence is at least one of Arg 8, TAT of HIV1, D-TAT, R-TAT, SV40-NLS,

nucleoplasmin-NLS, HIV REV, FHV coat, BMV GAG, HTLV-II, CCMV GAG,
P22N, Lambda N, Delta N, yeast PRP6, human U2AF, human C-FOS, human C-JUN,
yeast GCN4, or p-vec.

8. Use of a therapeutically effective amount of at least one peptide
consisting of
the amino acid sequence: PPLSQETFSDLWKLL (SEQ ID NO:1), PPLSQETFS (SEQ
ID NO:2), or ETFSDLWKLL (SEQ ID NO:3), said peptide fused on its amino
terminal end to a membrane penetrating leader sequence, for treating
neoplastic disease
in a subject.

9. Use of at least one peptide consisting of the amino acid sequence:
PPLSQETFSDLWKLL (SEQ ID NO:1), PPLSQETFS (SEQ ID NO:2), or
ETFSDLWKLL (SEQ ID NO:3), said peptide fused on its amino terminal end to a
membrane penetrating leader sequence, for the manufacture of a medicament for
treating neoplastic disease in a subject.



26

10. The use of claim 8 or 9, wherein the membrane penetrating leader sequence
comprises the amino acid sequence KKWKMRRNQFWVKVQRG (SEQ ID NO:4).

11. The use of claim 8 or 9, wherein the membrane penetrating leader sequence
comprises positively charged residues.

12. The use of claim 8 or 9, wherein the membrane penetrating leader sequence
is at
least one of Arg 8, TAT of HIV1, D-TAT, R-TAT, SV40-NLS, nucleoplasmin-NLS,
HIV REV, FHV coat, BMV GAG, HTLV-II, CCMV GAG, P22N, Lambda N, Delta N,
yeast PRP6, human U2AF, human C-FOS, human C-JUN, yeast GCN4, or p-vec.



27

Description

Note: Descriptions are shown in the official language in which they were submitted.


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PEPTIDES SELECTIVELY LETHAL TO MALIGNANT AND
TRANSFORMED MAMMALIAN CELLS

This application is a continuation-in-part application of Application Serial
No.

09/827,683,_filed April 5, 2001, this application claims the benefit of U.S.
Provisional
- = -
Application No. 60/363,785, filed March 12, 2002, and U.S. Serial No.
09/827,683 claims

the benefit of U.S. Provisional Application Serial No. 60/195,102, filed April
5, 2000.

BACKGROUND OF THE INVENTION

This invention relates to therapeutic modalities for treatment of neoplastic
disease.

More specifically, this invention involves synthetic peptides that selectively
destroy

malignant and transformed cells, and a method for treatment of neoplastic
disease based

thereon.

The p53 protein is a vital regulator of the cell cycle. It blocks the
oncogenic effects

of a number of oncogene proteins that induce mitosis, in part by blocking
transcription of

proteins that induce mitosis and by inducing the transcription of proteins
that block

mitosis, and promote apoptosis. Absence of the p53 protein is associated with
cell

transformation and malignant disease. Haffner, R & Oren, M. (1995) C1117.
Op/n. Genet.

Dev. 5: 84-90.

The p53 protein molecule consists of 393 amino acids. It includes domains that


bind to specific sequences of DNA in a DNA-binding domain that consists of
residues 93-

313. The crystal structure of this region has been determined by x-ray
crystallography.

Residues 312-393 are involved in the formation of homotetramers of the p53
protein.

=

=

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Residues 1-93 are involved in regulation of the activity and half life of the
p53 protein.
The p53 protein binds to another important regulatory protein, the MDM-2
protein.
The MDM-gene that encodes the MDM-2 protein is a known oncogene. The MDM-2
protein forms a complex with the p53 protein, which results in the degradation
of the p53
protein by a ubiquination pathway. The p53 protein binds to MDM-2 protein
using an
amino acid sequence that includes residues 14-22 of the p53 protein, which are
invariant.
The entire MDM-2 protein binding domain of the p53 protein spans residues 12-
26.
Haffner, R & Oren, M. (1995) Curr. Opin. Genet. Dev. 5: 84-90.
Considering that the MDM-2 protein is the expression product of a known
oncogene, it is not surprising that MDM-2 protein is a very important
regulatory protein.
Moreover, overexpression or amplification of MDM-2 protein has been found in
40-60%
of human malignancies, including 50% of human breast tumors. It has been
suggested that
formation of a complex between the p53 protein and the MDM-2 protein may
result in the
inhibition of transcription activity of the p53 protein, and thus the anti-
tumor effect of the
molecule by blocking of an activation domain of the p53 protein, or of a DNA
binding site
within it. More generally, these and other experimental observations have been
interpreted
as suggesting that the anti-tumor effect of the p53 protein might be enhanced
by peptides
capable of interfering with the binding of the MDM-2 protein to the p53
protein. Indeed, a
number of investigators have suggested that the MDM-2/p53 complex might be a
target for
rational drug design. See, e.g., Christine Wasylyk et al., 11p53 Mediated
Death of Cells
Overexpressing MDM2 by an Inhibitor of MDM2 Interaction with p5311, Oncogene,
18,
1921-34 (1999), and U.S. Patent No. 5,770,377 to Picksley et al.


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SUMMARY OF THE INVENTION

The present invention provides a peptide comprising at least about six .

contiguous amino acids of the amino acid sequence: PPLSQETFSDLWKIL (SEQ ID

NO:1), or an analog or derivative thereof, wherein said peptide or analog or
derivative

thereof is fused to a membrane-penetrating leader sequence and is selectively
lethal to
- .
malignant or transformed cells.

Examples of such peptides include PPLSQETFSDLWKLL (SEQ ED NO:1) or an

analog or derivative thereof, PPLSQETFS (SEQ ID NO:2) or an analog or
derivative

thereof and ETFSDLWKLL (SEQ ID NO:3) or an analog or derivative thereof. In
order to

be transported across a cell membrane and selectively kill a malignant or
transformed cell,

the leader sequence is preferably positioned at the carboxyl terminal end of
the Peptide,

analog, or derivative thereof. Preferably, the leader sequence comprises
predominantly

positively charged amino acid residues. Examples of leader sequences which may
be used

in accordance With the present invention include but are not limited to
penetratin, Arg8,

TAT of H1V1, D-TAT, R-TAT, SV40-NLS, nucleoplasmin-NLS, REV REV (34-50), FHV

coat (35-49), BMV GAG (7-25), HTLV-II REX (4-16), CCMV GAG (7-25), P22N (14-

30), Lambda N (1-22), Delta N (12-29), yeast PRP6, human U2AF, human C-FOS
(139-


164), human C-JUN (252-279), yeast GCN4, and p-vec. Preferably, the leader
sequence is

the penetratin sequence from antetznapedia protein having the amino acid
sequence

2,0 KKWKNIRRNQFWVICVQRG (SEQ ID NO:4).

Pharmaceutical compositions comprising at least one of the subject peptides

admixed with a pharmaceutically acceptable carrier are also provided. In
addition,



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methods for treating neoplastic disease in a subject i.e., selectively killing
malignant or


neoplastic cells in a subject, are provided. In one embodiment, the method
comprises


administering to the subject, a therapeutically effective amount of a peptide
comprising at


least about six contiguous amino acids of the amino acid sequence: =


PPLSQEFFSDLANKLL (SEQ ID NO:1), or an analog or derivative thereof, wherein
said
_ =

peptide or analog or derivative thereof is fused at its carboxy terminal end
to a membrane-


penetrating leader sequence and is selectively lethal to malignant or
transformed cells. In


another embodiment, the method comprises administering to the subject, a
therapeutically


effective amount of at least one peptide having the sequence set forth in SEQ
ID NO:1,


SEQ ID NO:2, or SEQ ID NO:3, or an analog or derivative thereof, wherein a
membrane-


penetrating leader sequence is fused to the carboxy terminal end of the
peptide, analog, or


derivative thereof.


BRIEF DESCRIPTION OF THE DRAWINGS


Figure 1 graphically depicts the in vivo tumor-inhibiting effect of PNC-28
(SEQ ID


NO:3 fused at its carboxy terminal end to SEQ ID NO:4) in homozygous NU/NU
mice


xenotransplanted with pancreatic carcinoma cells. The arrow with a star
indicates the time


of s.c. pump implantation on day 13 (precisely 13.5) during the tumor growth
period.



DETAILED DESCRIPTION OF THE INVENTION


In accordance with the present invention, it has been discovered that
malignant and


transformed cells are selectively destroyed by administration of a synthetic
peptide


comprising a sequence of amino acids within the p53 protein and a leader
sequence as a


single continuous polypeptide chain. The mechanism of action appears to be
independent



4



_ . . .

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of the p53 protein binding to the MDM-2 protein, as the p53 peptide
selectively kills
transformed cells that do not produce the p53 protein at all. The p53 peptide
also
selectively kills malignant and transformed cells that express normal or
elevated levels of
the p53 protein without killing normal cells.
In accordance with the present invention, there are provided compositions
comprising peptides corresponding to all or a portion of amino acid residues
12-26 of
human 1353. This region is known to contact the mdm-2 protein and adopts an a-
helical
conformation when bound to mdm-2. When fused on the carboxy-terminal end with
a
membrane-penetrating leader sequence, the subject peptides selectively kill
malignant and
transformed human cells.
In a first aspect of the invention, there is provided a peptide comprising at
least .
about six contiguous amino acids of the following amino acid sequence:
PPLSQETFSDLWKLL (SEQ ID NO:1), wherein the peptide comprising at least about
six
contiguous amino acids is fused to a leader sequence. Preferably, the peptide
comprises
from at least about eight (8) to at least about fifteen (15) amino acid
residues. In a
preferred embodiment, a peptide comprising from at least about eight (8) to at
least about
15 (fifteen) amino acids of the sequence set forth in SEQ ID NO:1 has the
following amino
acid sequence: PPLSQETFSDLWKLL (SEQ ID NO:1). In another preferred
embodiment, a peptide comprising from at least about eight (8) to at least
about 15
(fifteen) amino acids of the sequence set forth in SEQ 1D NO:1 has the
following amino
acid sequence: PPLSQETFS (SEQ ID NO:2). In still another preferred embodiment,
a
peptide comprising from at least about eight (8) to at least about fifteen
(15) amino acids of


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WO 03/105880 CA 02477878 2004-09-01 PCT/US03/07687

the sequence set forth in SEQ ID NO:1 has the following amino acid sequence:
ETFSDLWKLL (SEQ ID NO:3).
Leader sequences which function to import the peptides of the invention into a
cell
may be derived from a variety of sources. Preferably, the leader sequence
comprises
predominantly positively charged amino acid residues since a positively
charged leader
sequence stabilizes the alpha helix of a subject peptide. Examples of leader
sequences
which may be linked to the peptides of the present invention are described in
Futaki, S. et
al (2001) Arginine-Rich Peptides, J. Biol. Chem. 276,:5836-5840, and include
but are not
limited to the following membrane-penetrating leader sequences (numbering of
the amino
acid residues making up the leader sequence of the protein is indicated
parenthetically
immediately after the name of the protein in many cases):
penetratin (KKWKMRRNQFWVKVQRG)(SEQ ID NO:4); (Arg)8 or any poly-R from
(R)4-(R)16; HIV-1 TAT(47-60) (YGRICKRRQRRRPPQ)(SEQ ID NO:5); D-TAT
(GRKKRRQRRRPPQ) (SEQ ID NO:6); R-TAT G(R)9PPQ(SEQ EI) NO:7);
SV40-NLS (PKKKRKV)(SEQ ID NO:8); nucleoplasrnin-NLS
(KRPAAJKKAGQAKKKK)(SEQ ID NO:9); REV REV (34-50)-
(TRQARRNRRRRWRERQR)(SEQ ID NO:10); FHV (35-49) coat-
(RRRRNRTRRNRRRVR)(SEQ ID NO:11); BMV GAG (7-25)-
(KMTRAQRRAAARRNRWTAR)(SEQ ID NO:12); HTLV-II REX 4-16-
(TRRQRTRRARRNR)(SEQ ID NO:13); CCMV GAG (7-25) -
(KLTRAQ TR)(SEQ ID NO:14); P22 N (14-
30)(NAKTRRHERRRKLAIER)(SEQ ID NO:15); LAMBDA N (1-

6

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22)(MDAQTRRRERRAEKQAQWKAAN)(SEQ ID NO:16);
Phi N (12-29) (TAKTRYKARRAELIAERR)(SEQ ID NO:17);
YEAST PRP6 (129-124) (TRRNKRNRIQEQLNRK) (SEQ ID NO:18);
HUMAN U2AF (SQMTRQARRLYV)(SEQ ID NO:19); HUMAN C-FOS (139-164)
KRRIRRERNMMAAAKSRNRRRELTDT (SEQ NO:20);
HUMAN C-JUN (252-279) (RLKAERKRMRNRIAASKSRKRKLERIAR)(SEQ ID
NO:21); YEAST GCN4 (KRARNTEAARRSRARKLQR_MKQ)(SEQ ID NO:22);
KLALKLALKALKAALKLA(SEQ ID NO:23); p-vec LLIILRRRIR_KQAKAHSK(SEQ
ID NO:24). Other membrane penetrating leader sequences may also be used. Such
sequences are widely available and are described e.g., in Scheller et al.
(2000) Eur. J.
Biochern. 267:6043-6049, and Elmquist et al., (2001) Exp. Cell Res. 269:237-
244.
Preferably, the positively charged leader sequence of the penetratin leader
sequence of antennapedia protein is used. This leader sequence has the
following amino
acid sequence: KKWKMRRNQFWVKVQRG (SEQ ID NO:4). Preferably, the leader
sequence is attached to the carboxyl terminal end of the p53 peptide to enable
the synthetic
peptide to kill transformed and malignant cells.
Structurally related amino acid sequences may be substituted for the disclosed

sequences set forth in SEQ ID NOs: 1, 2, 3, or 4 in practicing the present
invention. Any
of the sequences set forth in SEQ ID NOs: 1, 2 or 3, including analogues or
derivatives
thereof, when joined with a leader sequence, including, but not limited to the
sequence set
forth in SEQ ID NO: 4, will be referred to herein as either a "synthetic
peptide" or
"synthetic peptides." Rigid molecules that mimic the three dimensional
structure of these


7

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synthetic peptides are called peptidomimetics and are also included within the
scope of this

invention. Alpha helix stabilizing amino acid residues at either or both the
amino or
carboxyl terminal ends of the p53 peptide may be added to stabilize the alpha
helical

conformation which is known to be the conformation of this region of the p53
protein

when it binds to the MDM-2 protein. Examples of alpha helical stabilizing
amino acids
include Leu, Glu (especially on the amino terminal of the helix), Met and Phe.
Amino acid insertional derivatives of the peptides of the present invention
include

amino and/or carboxyl terminal fusions as well as intra-sequence insertions of
single or
multiple amino acids. Insertional amino acid sequence variants are those in
which one or
more amino acid residues are introduced into a predetermined site in a subject
peptide
although random insertion is also possible with suitable screening of the
resulting product.
Deletional variants may be made by removing one or more amino acids from the
sequence

of a subject peptide. Substitutional amino acid variants are those in which at
least one
residue in the sequence has been removed and a different residue inserted in
its place.
Typical substitutions are those made in accordance with the following Table 1:

TABLE 1
Suitable residues for amino acid substitutions

Original Residue Exemplary Substitutions
Ala (A) Ser
Arg (R) Lys
Asn (N) Gln; His
Asp (D) Glu
Cys (C) Ser
Gin (Q) Asn
Glu (E) Asp
Gly (G) Pro


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His (H) Asn; Gin
Ile (I) Leu; Val
Leu (L) Ile; Val
Lys (K) Arg; Gin; Glu
Met (M) Leu; Ile
Phe (F) Met; Leu; Tyr . =
Ser (S) Thr
Thr (T) Ser
7 - Trp (W) Tyr
Tyr (Y) Trp; Phe
Val (V) Ile; Leu


When the synthetic peptide is derivatised by amino acid substitution, the
amino =

acids are generally replaced by other amino acids having like properties such
as

hydrophobicity, hydrophilicity, electronegativety, bulky side chains and the
like. As used

herein, the terms "derivative", "analogue", "fragment", "portion" and "like
molecule" refer .

to a subject peptide having the amino acid sequence as set forth in SEQ ID
NOs:1, 2, 3, or

4, having an amino acid substitution, insertion, addition, or deletion, as
long as said

derivative, analogue, fragment, portion, or like molecule retains the ability
to enter and

selectively kill transformed or neoplastic cells.

The synthetic peptides of the present invention may be synthesized by a number
of

known techniques. For example, the peptides may be prepared using the solid-
phase

technique initially described by Merrifield (1963) in J. Am. Chem. Soc.
85:2149-2154.

Other peptide synthesis techniques may be found in M. Bodanszky et al. Peptide
Synthesis,

John Wiley and Sons, 2d Ed., (1976) and other references readily available to
those skilled

in the art. A summary of polypeptide synthesis techniques may be found in J.
Sturart and

J.S. Young, Solid Phase Peptide Synthesis, Pierce Chemical Company, Rockford,
Ill.,



9 =

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(1984). Peptides may also be synthesized by solution methods as described in
The

Proteins, Vol. II, 3d Ed., Neurath, H. et al., Eds., pp. 105-237, Academic
Press, New York,

N.Y. (1976). Appropriate protective groups for use in different peptide
syntheses are

described in the texts listed above as well as in J.F.W. McOmie, Protective
Groups in

Organic Chemisny, Plenum Press, New York, N.Y. (1973). The peptides of the
present
- -
invention may also be prepared by chemical or enzymatic cleavage from larger
portions of

the p53 protein or from the full length p53 protein. Likewise, leader
sequences for use in

the synthetic peptides of the present invention may be prepared by chemical or
enzymatic

cleavage from larger portions or the full length proteins from which such
leader sequences

are derived.

Additionally, the peptides of the present invention may also be prepared by

recombinant DNA techniques. For most amino acids used to build proteins, more
than one

coding nucleotide triplet (codon) can code for a particular amino acid
residue. This

property of the genetic code is known as redundancy. Therefore, a number of
different

nucleotide sequences may code for a particular subject peptide selectively
lethal to

malignant and transformed mammalian cells. The present invention also
contemplates a

deoxyribonucleic acid (DNA) molecule that defines a gene coding for, i.e.,
capable of

expressing a subject peptide or a chimeric peptide from which a peptide of the
present

invention may be enzymatically or chemically cleaved.

When applied to cells grown in culture, synthetic peptides are selectively
lethal to

malignant or transformed cells, resulting in dose dependent reduction in cell
number. The

effect is observable generally within two to three and at most 48 hours. A
line of rat



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pancreatic acinar cells (BMRPA.430) grown in culture was transformed with K-
ras. The


normal cell line displays the architecture typical of pancreatic acinar cells;
the transformed


cells (TUC-3) lack the differentiated morphology of acinar cells, appearing as
typical


pancreatic cancer cells. When BMRPA.430 cells were treated with a synthetic
peptide


with the primary structure of SEQ ID NO:1 coupled to leader sequence SEQ ID
NO:4, at a
_- -

dosage of 50p,g/m1, the cells were not affected. However, when TUC-3 cells
were treated


with a peptide with the primary structure of SEQ ID NO:1 coupled to leader
sequence SEQ


ID NO:4, at a dosage of 100 pg/ml, they died within three to four days.
Similar results


were obtained when the same experiment was performed but SEQ ID NO:1 was


substituted with either SEQ II) NO:2, or SEQ ID NO:3. Additionally,
transformed and


malignant cell death was observed in human breast carcinoma cell lines and
Melanoma and


HeLa cells treated with a synthetic peptide with the primary structure of SEQ
ID NO:1


coupled to leader sequence SEQ ID NO:4, at a dosage of 100 g/mi. In contrast,
the same


synthetic peptide at the same dosage had no effect on non-malignant and non-
transformed


human breast or fibroblast cell lines.


When the leader sequence set forth in SEQ ID NO:4 was positioned at the
carboxy


terminal end of PNC29, a control protein having the following amino acid
sequence:


MPFSTGKRIMLGE (SEQ ID NO: 25), there was no effect on malignant or normal
cells.


Additionally, the peptide having the amino acid sequence as set forth in SEQ
ID


NO:3 fused at the carboxy terminal end to the leader peptide set forth in SEQ
ID NO:4, has


no effect on the ability of human stem cells to differentiate into
hematopoietic cell lines in


the presence of growth factors. This indicates that this peptide will not be
injurious to



11


=

CA 02477878 2010-06-01 =



bone marrow cells when administered as a chemotherapeutic agent. See Kanovsky
et al.,

(October 23, 2001) PrOC. Nat. Acad. Sci. USA 98(22);12438-12443.


When cultured cancer cells were treated with a peptide with the primary
structure

of SEQ ID NO:1 without a leader sequence attached, at a dosage of 100 p.g/rnl,
the cells

were unaffected. Similarly, when cultured cancer cells were treated with
leader sequence

SEQ ID NO:4, the presently preferred leader sequence, at the same dosage, the
cell were
also unaffected. These results indicate that the leader sequence of the
synthetic peptide

allows the synthetic peptide to cross the cellular membranes of treated cells
and that the
effect of the synthetic peptide is necessarily intracellular.

In order to determine whether the synthetic peptides acted by interfering with
the
binding of the p53 protein and the MDM-2 protein, the synthetic peptides were
tested on
transformed colorectal adenocarcinoma cells that had been rendered incapable
of making
the p53 protein by homozygous deletion. Surprisingly, the synthetic peptides
selectively
killed the transformed cells, but had no effect on the normal cells. These
results indicate
that the mechanism of action appears to be independent of the p53 protein
binding to the
MDM-2 protein, as the p53 peptide selectively kills transformed cells that do
not produce
the p53 protein at all. These results indicate that interference with binding
of the p53
protein to the MDM-2 protein may not be the mechanism by which synthetic
peptides
cause selective death of malignant and transformed cells. Although the
synthetic peptides
disclosed herein, their derivatives, analogues, and peptidomimetic molecules
are useful in



12


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CA 02477878 2004-09-01
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the treatment of neoplastic disease such as cancer, the mechanism for action
on


transformed and malignant cells has not been discovered.


The peptides of the present invention are effective against neoplastic cells
in vivo.


For example, mice having been xenotransplanted with the pancreatic carcinoma
cells


BMRPA1.TUC-3 and having developed tumor size of about 3-6 mm, have the size of
such
_ -

tumors drastically reduced after administration of a subject synthetic
peptide, e.g., a


peptide having the amino acid sequence as set forth in SEQ ID NO:3 fused to a
leader


sequence at the carboxy terminal end.


Consistent with the observed properties of the peptides of the invention, the
subject


peptides may be used to selectively kill neoplastic or malignant cells, i.e..,
cancer cells in


animals, preferentially humans. The synthetic peptides of the present
invention are thus


administered in an effective amount to kill neoplastic cells in a subject
animal or human.


The synthetic peptides of the present invention may be administered preferably
to a


human patient as a pharmaceutical composition containing a therapeutically
effective dose


of at least one synthetic peptide according to the present invention together
with a


pharmaceutical acceptable carrier. The term "therapeutically effective amount"
or


"pharmaceutically effective amount" means the dose needed to produce in an
individual,


suppressed growth including selective killing of neoplastic or malignant
cells, i.e., cancer


cells.


Preferably, compositions containing one or more of the synthetic peptides of
the


present invention are administered intravenously for the purpose of
selectively killing


neoplastic cells, and therefore, treating neoplastic or malignant disease such
as cancer.



13

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Examples of different cancers which may be effectively treated using one or
more the


peptides of the present invention include but are not limited to: breast
cancer, prostate


cancer, lung cancer, cervical cancer, colon cancer, melanoma, pancreatic
cancer and all


solid tissue tumors (epithelial cell tumors) and cancers of the blood
including but not


limited to lymphomas and leukemias.
- _ =

Administration of the synthetic peptides of the present invention may be by
oral,


intravenous, intranasal, suppository, intraperitoneal, intramuscular,
intradermal or


subcutaneous administration or by infusion or implantation. When administered
in such


manner, the synthetic peptides of the present invention may be combined with
other


ingredients, such as carriers and/or adjuvants. There are no limitations on
the nature of the


other ingredients, except that they must be pharmaceutically acceptable,
efficacious for


their intended administration, cannot degrade the activity of the active
ingredients of the


compositions, and cannot impede importation of a subject peptide into a cell.
The peptide


compositions may also be impregnated into transdermal patches, or contained in


subcutaneous inserts, preferably in a liquid or semi-liquid form which patch
or insert time-


releases therapeutically effective amounts of one or more of the subject
synthetic peptides.


The pharmaceutical forms suitable for injection include sterile aqueous
solutions or


dispersions and sterile powders for the extemporaneous preparation of sterile
injectable


solutions or dispersions. The ultimate solution form in all cases must be
sterile and fluid.

Typical carriers include a solvent or dispersion medium containing, e.g.,
water buffered


aqueous solutions, i.e., biocompatible buffers, ethanol, polyols such as
glycerol, propylene


glycol, polyethylene glycol, suitable mixtures thereof, surfactants or
vegetable oils.



14

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PCT/US03/07687

=
Sterilization may be accomplished utilizing any art-recognized technique,
including but not
. limited to filtration or addition of antibacterial or antifungal agents.
Examples of such

agents include paraben, chlorbutanol, phenol, sorbic acid or thimerosal.
Isotonic agents
such as sugars or sodium chloride may also be incorporated into the subject
compositions. . .
_ As used herein, a "pharmaceutically acceptable carrier" includes any and all

solvents, dispersion media, coatings, antibacterial and antifungal agents,
isotonic agents
and the like. The use of such media and agents are well-known in the art.
Production of sterile injectable solutions containing the subject synthetic
peptides is

accomplished by incorporating one or more of the subject synthetic peptides
described
hereinabove in the required amount in the appropriate solvent with one or more
of the
various ingredients enumerated above, as required, followed by sterilization,
preferably
filter sterilization. In order to obtain a sterile powder, the above solutions
are vacuum-
dried or freeze-dried as necessary.
Inert diluents and/or assimilable edible carriers and the like may be part of
the
pharmaceutical compositions when the peptides are administered orally. The

pharmaceutical compositions may be in hard or soft shell gelatin capsules, be
compressed
into tablets, or may be in an elixir, suspension, syrup or the like.
The subject synthetic peptides are thus compounded for convenient and
effective
administration in pharmaceutically effective amounts with a suitable
pharmaceutically
acceptable carrier in a therapeutically effective dosage. Examples of a
pharmaceutically

effective amount includes peptide concentrations in the range from about at
least about
25ug/m1 to at least about 300 ug/ml.



15

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A precise therapeutically effective amount of synthetic peptide to be used in
the
methods of the invention applied to humans cannot be stated due to variations
in stage of
neoplastic disease, tumor size and aggressiveness, the presence or extent of
Metastasis, etc.
In addition, an individual's weight, gender, and overall health must be
considered and will
effect dosage. It can be generally stated, however, that the synthetic
peptides of the present
invention be administered in an amount of at least about 10 mg per dose, more
preferably
in an amount up to about 1000 mg per dose. Since the peptide compositions of
the present
invention will eventually be cleared from the bloodstream, re-administration
of the
pharmaceutical compositions is indicated and preferred.
The synthetic peptides of the present invention may be administered in a
manner
compatible with the dosage formulation and in such an amount as will be
therapeutically
effective. Systemic dosages depend on the age, weight, and condition of the
patient and
the administration route. An exemplary suitable dose for the administration to
adult
humans ranges from about 0.1 to about 20 mg per kilogram of body weight.
Preferably,
the dose is from about 0.1 to about 10 mg per kilogram of body weight.
In accordance with the present invention, there is also provided a method of
treating neoplastic disease. The method comprises administering to a subject
in need of
such treatment, a therapeutically effective amount of a synthetic peptide
hereinbefore
described, including analogs and derivatives thereof. Thus for example, in one
embodiment, an effective amount of a peptide comprising at least about six
contiguous
amino acids as set forth in SEQ ID NO:1 or an analog or derivative thereof
fused on its
carboxy terminal end to a leader sequence may be administered to a subject. In
another


16

WO 03/105880 CA 02477878 2004-09-01 PCT/US03/07687


embodiment, an effective amount of a peptide comprising at least from about
eight (8) to at
least about ten (10) contiguous amino acids as set forth in SEQ ID NO:1 or an
analog or
derivative thereof, fused on its carboxy terminal end to a leader sequence,
may be ,
administered to a subject. For example, an effective amount of a peptide
having the amino
acid sequence as set forth in SEQ ID NO:1 or an analog or derivative thereof,
fused on its
carboxy terminal end to a leader sequence may be administered to a subject. An
effective
amount of a peptide having the amino acid sequence as set forth in SEQ ID NO:2
or an
analog or derivative thereof, fused on its carboxy terminal end to a leader
sequence may
also be administered to a subject. In still another embodiment, an effective
amount of a
peptide having the amino acid sequence set forth in SEQ ID NO:3 or an analog
or
derivative thereof, fused on its carboxy terminal end to a leader sequence may
be
administered to a subject. In accordance with a method of treatment, a mixture
of
synthetic peptides may be administered. Thus, for example, in addition to
administering
one of the peptides, or analogs or derivatives thereof hereinbefore described
in an effective
amount, mixtures of two or more peptides or analogs or derivatives
hereinbefore described
may be administered to a subject.
The following examples further illustrate the invention and are not meant to
limit
the scope thereof.


=



17

CA 02477878 2004-09-01

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EXAMPLE I



The following experiment was performed to compare effectiveness of subject



peptides having the leader sequence attached to the amino terminal end. As
described



supra, peptides synthesized with a leader sequence on the carboxyl terminal
promoted a-



helix formation in the peptide, which is the active conformation of the p53
part of this
_ -


peptide when bound to MDM-2. As described supra, subject peptides having the
amino



acid sequences as set forth in SEQ ID NOs:1, 2, and 3 are strongly toxic to a
wide variety



of human cancer cells, including those that are homozygously p53 gene-deleted.
An a-



helix probability profile for each peptide having the sequences set forth in
SEQ ID NOs:1-


3 was performed using two different methods, one using helix probabilities
from the



protein database (Karplus, K. et al., (1998) Bioinformatics 14:846-856), and
the other



using the Ising model based on helix nucleation (a) and growth (s),
equilibrium constants



determined experimentally from block copolymers for each of the twenty
naturally



occurring L amino acids, modified by inclusion of the effects of charges on
these



parameters as described in Vasquez, M., et al. (1987) Biopolymers 26:351-372
and



Vasquez, M., et al., (1987) Biopolymers 26:373-393. Probability profiles
indicated that if



the leader sequence is on the amino terminal end, even though the peptide
still transverses



the cell membrane, the a-helical content is much lower.



The peptide having the sequence set forth in SEQ ID NO:3 was synthesized by



solid phase synthesis with the leader sequence attached to the amino terminal
end. This



peptide is labeled PNC28' in Table 2 below. The PNC28' peptide was incubated
with



transformed pancreatic cancer (TUC-3) cells at three different concentrations,
i.e., 25, 50



18

CA 02477878 2004-09-01

WO 03/105880 PCT/US03/07687



and 100 p,g/ml. After two weeks of incubation, at the highest dose of peptide,
there was no



cell death, and approximately half of the cells were seen to form acini and
exhibited the



untransformed morphological phenotype. The same phenomena were observed at 50



g/ml, and at 25 p,g/ml significantly fewer cells were seen to revert. In
contrast, when the



leader sequence was attached to the carboxyl terminal end of the peptide
(PNC28 in Table
_


2), at dosages of 50 and 100 p,g/ml. 100% cell death occurred in about 4 days.



These results show that the leader sequence is preferentially added to the
carboxyl



terminal end of the MDM-2 portion of the p53 peptide to enable the peptide to
cross the



cell membrane and specifically kill malignant cells. In Table 2, the leader
sequence is



KKWKMRRNQFWVKVQRG (SEQ ID NO:4).



TABLE 2



NAME p53 seq. PEPTIDE EFFECT

1. PNC 21 12-20 (PPLSQETFS) (SEQ ID NO:2)¨ Cytotoxic

Leader
2. PNC 27 12-26 (PPLSQETFSDLWKLL) (SEQ ID Cytotoxic

NO:1)¨ Leader
3. PNC 28 17-26 (ETFSDLWKLUSEQ ID NO:3) ¨ Cytotoxic

Leader
4. PNC 28' 17-26 Leader (ETFSDLWKLL)(SEQ ID No cell death and
reversion

NO:3)



These results indicate the uniqueness of the subject peptides. i.e., the
leader or



cluster of positively charged residues must be placed at the carboxy terminal
end of any


effector peptide for cancer cell toxicity.



19

CA 02477878 2004-09-01
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PCT/US03/07687


EXAMPLE H

Nu/Nu mice (Harlan Laboratories, Indianapolis, IN, n=10) and weighing 20-22g,
were xenotransplanted subcutaneously (s.c.) with live pancreatic carcinoma
cells
BMRPA1 .TUC-3 (1 x 106 cells/mouse) in the left hind region. Tumors were
allowed to
develop and grow and during daily examinations it was observed that all mice
developed
tumors with very similar growth rates.
After 12 days the tumors had reached sizes of 3 to 6 mm diameter and the mice
were separated into two groups of 5 mice each. Each group was implanted s.c.
with Alzet
osmotic pumps to deliver in a constant rate and over a defined period of 14
days a total
volume of 0.095 ml volume of normal saline containing the respective peptide
at a
concentration of 20mWmouse. One group of mice received PNC-28 (the peptide
having
the amino acid set forth in SEQ ID NO:3) fused at its carboxy terminal end to
the
penetratin leader sequence (SEQ ID NO:4) and the other group of mice received
PNC-29,
a control peptide of similar size, having the following amino acid sequence:
MPFSTGICREMLGE (SEQ ID NO: 25). The pumps were filled according to the
manufacturers guidelines and under sterile conditions The pumps were implanted
s.c. on
the left flank of the anaesthetized mice by creating a pocket underneath the
mouse skin into
which the tiny pumps were inserted. Each pocket was closed with a simple
suture. From
their inside chamber the pumps delivered continuously 0.25 1.11/ hr into each
mouse. The
mice were observed until they had recovered from the surgery when they were
returned to =
the isolation ward of the animal facility. Since the animals were Nu/Nu mice
and, thus,
immuno-compromised they are highly susceptible when exposed to pathogens.
Surgery

20

CA 02477878 2004-09-01
WO 03/105880 PCT/US03/07687



and all preceding and post-surgical treatments were therefore performed in a
sterile hood


environment.


As shown clearly in Figure 1, PNC-28 within a 48 to 72hr period of delivery
itito


the mouse effectively arrests tumor growth. In contrast, the control peptide
PNC-29 had


no effect.on normal or tumor cells. In PNC29-treated mice, tumors kept growing
at a
_

continuous rate resulting in tumors of 10 to 16 ram diameter over the 2 - week
treatment


and follow-up period when the pumps cease to release any more peptide
solution.


Statistical analyses of the measurement of tumor size in both groups of mice
has produced


a significance between them of p<0.001.



21

CA 02477878 2004-09-01
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EXAMPLE FEE


Using the same methodology of Example II, pumps were started at the same time

as live pancreatic carcinoma cells BMRPALTUC-3 (1 x 106 cells/mouse) were .

xenotransplanted into mice (n---10). Five mice were administered PNC28 and 5
mice were
_ -
not treated at all (sham treated). Results are tabulated below.


TABLE 3


Treatment 7 Days 14 Days 21 Days

Tumor Size

Sham treated 4.8 1.8 11.7 2.3 14.8 3.6

PNC-28 treated 3 + .6 3d .9 4.4 .8



22

CA 02477878 2004-09-01


WO 03/105880 PCT/US03/07687



EXAMPLE IV



Using the same methodology as described in Example II, live pancreatic
carcinoma



cells BMRPA1.TUC-3 (1 x 106 cells/mouse) were transplanted to the peritoneal
cavity of



five mice. Pumps were placed in the right shoulder region at the same time of
tumor cell
-



transplantation. In all five mice, there were no visible tumors after three
weeks.



23

CA 02477878 2012-01-11

The scope of the claims should not be limited by the preferred embodiments set

forth in the examples, but should be given the broadest interpretation
consistent with
the description as a whole.



24

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Administrative Status

Title Date
Forecasted Issue Date 2013-05-14
(86) PCT Filing Date 2003-03-12
(87) PCT Publication Date 2003-12-24
(85) National Entry 2004-09-01
Examination Requested 2008-03-03
(45) Issued 2013-05-14
Expired 2023-03-13

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Owners on Record

Note: Records showing the ownership history in alphabetical order.

Current Owners on Record
THE RESEARCH FOUNDATION OF STATE UNIVERSITY OF NEW YORK
Past Owners on Record
PINCUS, MATTHEW R.
Past Owners that do not appear in the "Owners on Record" listing will appear in other documentation within the application.
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