Note: Descriptions are shown in the official language in which they were submitted.
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ANTIBODIES FOR EPIDERMAL GROWTH FACTOR RECEPTOR 3 (HER3)
DIRECTED TO DOMAIN III AND DOMAIN IV OF HER3
Related Applications
This application claims priority to US Provisional Application No. 61/566,912
filed on
December 5, 2011, the contents of which are incorporated herein by reference
in their entirety.
Field of the Invention
The present invention relates to antibodies or fragments thereof that bind to
a non-linear
epitope within domain 3 of the HER3 receptor and inhibit both ligand-dependent
and ligand-
independent signal transduction. The invention also relates antibodies or
fragments thereof
that bind to amino acid residues within domains 3-4 of HER3 and inhibit both
ligand-
dependent and ligand-independent signal transduction; and compositions and
methods of use
of such antibodies or fragments thereof
Background of the Invention
The human epidermal growth factor receptor 3 (ErbB3, also known as HER3) is a
receptor
protein tyrosine kinase and belongs to the epidermal growth factor receptor
(EGFR) subfamily
of receptor protein tyrosine kinases, which also includes EGFR (HER1, ErbB1),
HER2
(ErbB2, Neu), and HER4 (ErbB4) (Plowman et at., (1990) Proc. Natl. Acad. Sci.
U.S.A.
87:4905-4909; Kraus et at., (1989) Proc. Natl. Acad. Sci. U.S.A. 86:9193-9197;
and Kraus et
at., (1993) Proc. Natl. Acad. Sci. U.S.A. 90:2900-2904). Like the prototypical
epidermal
growth factor receptor, the transmembrane receptor HER3 consists of an
extracellular ligand-
binding domain (ECD), a dimerization domain within the ECD, a transmembrane
domain, an
intracellular protein tyrosine kinase-like domain (TKD) and a C-terminal
phosphorylation
domain. Unlike the other HER family members, the kinase domain of HER3
displays very
low intrinsic kinase activity.
The ligands neuregulin 1 (NRG) or neuregulin 2 bind to the extracellular
domain of HER3
and activate receptor-mediated signaling pathway by promoting dimerization
with other
dimerization partners such as HER2. Heterodimerization results in activation
and
transphosphorylation of HER3 's intracellular domain and is a means not only
for signal
diversification but also signal amplification. In addition, HER3
heterodimerization can also
occur in the absence of activating ligands and this is commonly termed ligand-
independent
HER3 activation. For example, when HER2 is expressed at high levels as a
result of gene
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amplification (e.g. in breast, lung, ovarian or gastric cancer) spontaneous
HER2/HER3 dimers
can be formed. In this situation the HER2/HER3 is considered the most active
ErbB signaling
dimer and is therefore highly transforming.
Increased HER3 has been found in several types of cancer such as breast, lung,
gastrointestinal and pancreatic cancers. Interestingly, a correlation between
the expression of
HER2/HER3 and the progression from a non-invasive to an invasive stage has
been shown
(Alimandi et al., (1995) Oncogene 10:1813-1821; DeFazio et al., (2000) Cancer
87:487-498;
Naidu et at., (1988) Br. J. Cancer 78:1385-1390). Accordingly, agents that
interfere with
HER3 mediated signaling are needed.
Summary of the Invention
The invention is based on the surprising discovery of antibodies or fragments
thereof that bind
to a non-linear epitope of HER3 receptor comprising amino acid residues within
domain 3 of
HER3 and block both ligand-dependent (e.g. neuregulin) and ligand-independent
HER3
signaling pathways. The invention is also based on the discovery of antibodies
or fragments
thereof that bind to amino acid residues within domains 3-4 of HER3 and block
both ligand-
dependent (e.g. neuregulin) and ligand-independent HER3 signaling pathways.
Accordingly, in one aspect, the invention pertains to an isolated antibody or
fragment thereof
that recognizes a non-linear epitope of a HER3 receptor, wherein the non-
linear epitope
comprises amino acid residues within domain 3 of the HER3 receptor, wherein
the antibody
or fragment thereof binds to binding surface B, and wherein the antibody or
fragment thereof
blocks both ligand-dependent and ligand-independent signal transduction.
In one embodiment, binding surface B comprises at least one amino acid residue
selected
from a group consisting of amino acid residues 335-342, 398,400, 424-428, 431,
433-434 and
455. In another embodiment, the antibody or fragment thereof further binds to
binding
surface A. In one embodiment, binding surface A comprises at least one amino
acid residue
selected from a group consisting of amino acid residues 362-376.
In another aspect, the invention pertains to an isolated antibody or fragment
thereof that
recognizes a non-linear epitope of a HER3 receptor, wherein the non-linear
epitope comprises
amino acid residues within domain 3 of the HER3 receptor, wherein the antibody
or fragment
thereof binds to a binding surface comprising at least one amino acid residue
selected from
binding surface A and at least one amino acid residue selected from binding
surface B, and
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wherein the antibody or fragment thereof blocks both ligand-dependent and
ligand-
independent signal transduction.
In one embodiment, the antibody or fragment thereof blocks HER3 ligand binding
on the
HER3 receptor. In one embodiment, the HER3 ligand is selected from the group
consisting of
neuregulin 1 (NRG), neuregulin 2, betacellulin, heparin-binding epidermal
growth factor, and
epiregulin. In one embodiment, the antibody or fragment thereof has any one of
the
characteristics selected from the group consisting of binding to the inactive
state of the HER3
receptor, preventing HER3 adopting an active conformation due to steric
hindrance between
the antibody or fragment thereof and domains of HER3, preventing HER3 adopting
an active
conformation by reducing the degree of flexibility in domain 3, inducing a
conformational
change in domain 3 residues 371-377 that prevents HER3 from adopting an active
conformation, destabilizing HER3 such that it is susceptible to degradation,
accelerating down
regulation of cell surface HER3, and generating an un-natural HER3 dimer that
is susceptible
to proteolytic degradation or unable to dimerize with other receptor tyrosine
kinases. In one
embodiment, binding surface A comprises amino acid residues 362-376. In one
embodiment,
binding surface B comprises amino acid residues 335-342, 398,400, 424-428,
431, 433-434
and 455.
In one embodiment, the non-linear epitope comprises amino acid residues 335-
342, 362-376,
398,400, 424-428, 431, 433-434 and 455 (within domain 3), or a subset thereof.
In one
embodiment, the VH of the antibody or fragment thereof binds to at least one
of the following
HER3 residues: 11e365, Thr366, Asn369, G1y370, Asp371, Pro372, Trp373, His374,
Lys375,
G1n400, and Lys434. In one embodiment, the VL of the antibody or fragment
thereof binds to
at least one of the following HER3 residues: G1y335, Ser336, G1y337, Ser338,
Phe340,
G1n341, Asp362, Leu364, 11e365, Thr366, His374, 11e376, Asn398, G1n400,
Tyr424, Asn425,
Arg426, Phe428, Leu431, Met433, Lys434, Tyr455. In one embodiment, binding of
the
antibody or fragment thereof to the HER3 receptor in the absence of a HER3
ligand reduces
ligand-independent formation of a HER2-HER3 protein complex in a cell which
expresses
HER2 and HER3. In one embodiment, the antibody or fragment thereof inhibits
phosphorylation of HER3 as assessed by a HER3 ligand-independent
phosphorylation assay.
In one embodiment, the HER3 ligand-independent phosphorylation assay uses HER2
amplified cells, wherein the HER2 amplified cells are SK-Br-3 cells and BT-
474. In one
embodiment, binding of the antibody or fragment thereof to the HER3 receptor
in the
presence of a HER3 ligand reduces ligand-dependent formation of a HER2-HER3
protein
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complex in a cell which expresses HER2 and HER3. In one embodiment, the
antibody or
fragment thereof inhibits phosphorylation of HER3 as assessed by HER3 ligand-
dependent
phosphorylation assay. In one embodiment, the HER3 ligand-dependent
phosphorylation
assay uses stimulated MCF7 cells in the presence of neuregulin (NRG). In one
embodiment,
the antibody is selected from the group consisting of a monoclonal antibody, a
polyclonal
antibody, a chimeric antibody, a humanized antibody, and a synthetic antibody.
In another aspect, the invention pertains to isolated antibody or fragment
thereof that
recognizes an epitope of a HER3 receptor, wherein the epitope comprises amino
acid residues
within domains 3-4 of the HER3 receptor, and wherein the antibody or fragment
thereof
blocks both ligand-dependent and ligand-independent signal transduction.
In one embodiment, the epitope comprises at least one amino acid residue
selected from the
group consisting of amino acid residues: 329-498 (domain 3) of SEQ ID NO: 1,
and at least
one amino acid residue selected from the group consisting of amino acid
residues 499-642
(domain 4) of SEQ ID NO: 1. In one embodiment, the epitope comprising amino
acid residues
within domains 3-4 is selected from the group consisting of a linear epitope,
a non-linear
epitope, and a conformational epitope. In one embodiment, binding of the
antibody or
fragment thereof to the HER3 receptor in the absence of a HER3 ligand reduces
ligand-
independent formation of a HER2-HER3 protein complex in a cell which expresses
HER2
and HER3. In one embodiment, the antibody or fragment thereof inhibits
phosphorylation of
HER3 as assessed by a HER3 ligand-independent phosphorylation assay. In one
embodiment,
the HER3 ligand-independent phosphorylation assay uses HER2 amplified cells,
wherein the
HER2 amplified cells are SK-Br-3 cells and BT-474. In one embodiment, binding
of the
antibody or fragment thereof to the HER3 receptor in the presence of a HER3
ligand reduces
ligand-dependent formation of a HER2-HER3 protein complex in a cell which
expresses
HER2 and HER3. In one embodiment, the antibody or fragment thereof inhibits
phosphorylation of HER3 as assessed by HER3 ligand-dependent phosphorylation
assay. In
one embodiment, the HER3 ligand-dependent phosphorylation assay uses
stimulated MCF7
cells in the presence of neuregulin (NRG).
In another aspect, the invention pertains to an isolated antibody or fragment
thereof to a HER3
receptor, having a dissociation (KD) of at least 1 x 107 M-1, 108M-1, Wm-1,
1010 A4-15 1011 M-
151012 M-151013 M-15 wherein the antibody or fragment thereof blocks both
ligand-dependent
and ligand-independent signal transduction. In one embodiment, the antibody or
fragment
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thereof inhibits phosphorylation of HER3 as measured by an in vitro
phosphorylation assay
selected from the group consisting of phospho-HER3 and phospho-Akt.
In another aspect, the invention pertains to an isolated antibody or fragment
thereof binds to
the same non-linear epitope within domain 3 of HER3 as an antibody described
in Table 1.
In another aspect, the invention pertains to an isolated antibody or fragment
thereof, binds to
the same amino acid residues within domains 3-4 of HER3 as an antibody
described in Table
2.
In another aspect, the invention pertains to a fragment of an antibody that
binds to HER3
selected from the group consisting of; Fab, F(ab2)', F(ab)2', scFv, VHH, VH,
VL, dAbs,
wherein the fragment of the antibody blocks both ligand-dependent and ligand-
independent
signal transduction.
In another aspect, the invention pertains to a pharmaceutical composition
comprising an
antibody or fragment thereof and a pharmaceutically acceptable carrier. In one
embodiment,
the pharmaceutical composition further comprises an additional therapeutic
agent. In one
embodiment, the additional therapeutic agent is selected from the group
consisting of an
HER1 inhibitor, a HER2 inhibitor, a HER3 inhibitor, a HER4 inhibitor, an mTOR
inhibitor
and a PI3 Kinase inhibitor. In one embodiment, the additional therapeutic
agent is a HER1
inhibitor selected from the group consisting of Matuzumab (EMD72000),
Erbitux0/Cetuximab, Vectibix0 /Panitumumab, mAb 806, Nimotuzumab, Iressa0
/Gefitinib,
CI-1033 (PD183805), Lapatinib (GW-572016), Tykerb0 /Lapatinib Ditosylate,
Tarceva0 /
Erlotinib HCL (OSI-774), PKI-166, and Tovok0; a HER2 inhibitor selected from
the group
consisting of Pertuzumab, Trastuzumab, MM-111, neratinib, lapatinib or
lapatinib ditosylate
/Tykerb0; a HER3 inhibitor selected from the group consisting of, MM-121, MM-
111,
IB4C3, 2DID12 (U3 Pharma AG), AMG888 (Amgen), AV-203(Aveo), MEHD7945A
(Genentech), M0R10703 (Novartis) and small molecules that inhibit HER3; and a
HER4
inhibitor. In one embodiment, the additional therapeutic agent is a HER3
inhibitor, wherein
the HER3 inhibitor is MOR10703. In one embodiment, the additional therapeutic
agent is an
mTOR inhibitor selected from the group consisting of Temsirolimus/Torise10,
ridaforolimus /
Deforolimus, AP23573, MK8669, everolimus /Affinitor0. In one embodiment, the
additional
therapeutic agent is a PI3 Kinase inhibitor selected from the group consisting
of GDC 0941,
BEZ235, BKM120 and BYL719.
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In one aspect, the invention pertains to a method of treating a cancer
comprising selecting a
subject having an HER3 expressing cancer, administering to the subject an
effective amount
of a composition comprising an antibody or fragment thereof disclosed in Table
1 or Table 2.
In one embodiment, the subject is a human and the cancer is selected from the
group
consisting of breast cancer, colorectal cancer, lung cancer, multiple myeloma,
ovarian cancer,
liver cancer, gastric cancer, acute myeloid leukemia, chronic myeloid
leukemia,
osteosarcoma, squamous cell carcinoma, peripheral nerve sheath tumors ,
schwannoma, head
and neck cancer, bladder cancer, esophageal cancer, Barretts esophageal
cancer, glioblastoma,
clear cell sarcoma of soft tissue, malignant mesothelioma, neurofibromatosis,
renal cancer,
and melanoma, prostate cancer, benign prostatic hyperplasia (BPH),
gynacomastica, and
endometriosis. In one embodiment, the cancer is breast cancer.
In one aspect, the invention pertains to use of the antibody or fragment
thereof for use as a
medicament. In one aspect, the invention pertains to use of the antibody or
fragment thereof
for use in treating a cancer mediated by a HER3 ligand-dependent signal
transduction or
ligand-independent signal transduction pathway. In one aspect, the invention
pertains to use of
the antibody or fragment thereof for the manufacture of a medicament for the
treatment of a
cancer mediated by a HER3 ligand-dependent signal transduction or ligand-
independent
signal transduction pathway selected from the group consisting of of breast
cancer, colorectal
cancer, lung cancer, multiple myeloma, ovarian cancer, liver cancer, gastric
cancer, pancreatic
cancer, acute myeloid leukemia, chronic myeloid leukemia, osteosarcoma,
squamous cell
carcinoma, peripheral nerve sheath tumors , schwannoma, head and neck cancer,
bladder
cancer, esophageal cancer, Barretts esophageal cancer, glioblastoma, clear
cell sarcoma of soft
tissue, malignant mesothelioma, neurofibromatosis, renal cancer, melanoma,
prostate cancer,
benign prostatic hyperplasia (BPH), gynacomastica, and endometriosis.
Brief Description of Figures
Figure 1 Representative M0R12615 SET curves obtained with human HER3;
Figure 2 SK-Br-3 cell binding determination by FACS titration;
Figure 3 HER3 domain binding ELISA;
Figure 4 (A) Surface representation of the HER3/MOR12604 x-ray crystal
structure.
HER3 (labeled by domains: D2, D3 & D4) is in the closed conformation, and
M0R12604
binds to domain 3. (B) Ca-superposition of HER3 from the HER3/M0R12064
structure
(dark gray) with an unbound HER3 structure (light gray; Cho et at., (2003)
Nature
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421:756-760) aligned by domain 3. (C) View of the domain 3 epitope recognized
by
12604. Highlighted HER3 residues are within 5A of M0R12604 in the x-ray
crystal
structure. (D) View of domain 3/M0R12604 interaction. The M0R12604 binding
surface
is highlighted in dark gray with surface A (solid line) and surface B (dashed
line)
indicated;
Figure 5 Inhibition of ligand induced (A) HER3 and (B) Akt
phosphorylation in MCF7
cells;
Figure 6 Inhibition of ligand independent (A) HER3 and (B) Akt
phosphorylation in
HER2 amplified SKBr3 cells;
Figure 7 Inhibition of ligand independent (A) HER3 and (B) Akt
phosphorylation in
HER2 amplified BT474 cells;
Figure 8 Inhibition of ligand stimulated proliferation of MCF7 cells;
Figure 9 Inhibition of ligand-independent proliferation of SKBr3 cells;
Figure 10 Inhibition of ligand-independent proliferation of BT474 cells;
Figure 11 Data showing inhibition of tumor growth in vivo in BxPC3 (A) and
BT474 (B)
using M0R12606 and M0R13655; and
Figure 12 Data showing improved inhibition of tumor growth in vivo in
BxPC3 using a
combination of M0R12606 (DIII binder) and M0R10703 (DII + IV binder).
Detailed Description of the Invention
Definitions
In order that the present invention may be more readily understood, certain
terms are first
defined. Additional definitions are set forth throughout the detailed
description.
The phrase "signal transduction" or "signaling activity" as used herein refers
to a biochemical
causal relationship generally initiated by a protein-protein interaction such
as binding of a
growth factor to a receptor, resulting in transmission of a signal from one
portion of a cell to
another portion of a cell. For HER3, the transmission involves specific
phosphorylation of one
or more tyrosine, serine, or threonine residues on one or more proteins in the
series of
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reactions causing signal transduction. Penultimate processes typically include
nuclear events,
resulting in a change in gene expression.
The term "HER3" or "HER3 receptor" also known as "ErbB3" as used herein refers
to
mammalian HER3 protein and "her3" or "erbB3" refers to mammalian her3 gene.
The
preferred HER3 protein is human HER3 protein present in the cell membrane of a
cell. The
human her3 gene is described in U.S. Pat. No. 5,480,968 and Plowman et at.,
(1990) Proc.
Natl. Acad. Sci. USA, 87:4905-4909.
Human HER3 as defined in Accession No. NP 001973 (human), and represented
below as
SEQ ID NO: 1. All nomenclature is for full length, immature HER3 (amino acids
1-1342).
The immature HER3 is cleaved between positions 19 and 20, resulting in the
mature HER3
protein (20-1342 amino acids).
mrandalqvl gllfslargs evgnsqavcp gtlnglsvtg daenqyqtly klyercevvm
gnleivltgh nadlsflqwi revtgyvlva mnefstlplp nlrvvrgtqv ydgkfaifvm
lnyntnssha lrqlrltqlt eilsggvyie kndklchmdt idwrdivrdr daeivvkdng
rscppchevc kgrcwgpgse dcqtltktic apqcnghcfg pnpnqcchde caggcsgpqd
tdcfacrhth dsgacvprcp qplvynkltf qlepnphtky qyggvcvasc phnfvvdqts
cvracppdkm evdknglkmc epcgglcpka cegtgsgsrf qtvdssnidg fvnctkilgn
ldflitglng dpwhkipald peklnvfrtv reitgylniq swpphmhnfs vfsnittigg
rslynrgfsl limkninvts lgfrslkeis agriyisanr qlcyhhslnw tkvlrgptee
rldikhnrpr rdcvaegkvc dplcssggcw gpgpgqclsc rnysrggvcv thcnflngep
refaheaecf schpecqpme gtatcngsgs dtcaqcahfr dgphcvsscp hgvlgakgpi
ykypdvqnec rpchenctqg ckgpelqdcl gqtivligkt hltmaltvia glvvifinmlg
gtflywrgrr iqnkramrry lergesiepl dpsekankvl arifketelr klkvlgsgvf
gtvhkgvwip egesikipvc ikviedksgr qsfqavtdhm laigsldhah ivrllglcpg
sslqlvtqyl plgslldhvr qhrgalgpql llnwgvqiak gmyyleehgm vhrnlaarnv
llkspsqvqv adfgvadllp pddkqllyse aktpikwmal esihfgkyth qsdvwsygvt
vwelmtfgae pyaglrlaev pdllekgerl aqpqictidv ymvmvkcwmi denirptfke
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laneftrmar dpprylvikr esgpgiapgp ephgltnkkl eevelepeld ldldleaeed
nlatttlgsa lslpvgtlnr prgsqsllsp ssgympmnqg nlgescqesa vsgssercpr
pvslhpmprg clasessegh vtgseaelqe kvsmcrsrsr srsprprgds ayhsqrhsll
tpvtplsppg leeedvngyv mpdthlkgtp ssregtlssv glssvlgtee ededeeyeym
nrrrrhspph pprpssleel gyeymdvgsd lsaslgstqs cplhpvpimp tagttpdedy
eymnrqrdgg gpggdyaamg acpaseqgye emrafqgpgh qaphvhyarl ktlrsleatd
safdnpdywh srlfpkanaq rt (SEQ ID NO: 1)
The term "HER3 ligand" as used herein refers to polypeptides which bind and
activate HER3.
Examples of HER3 ligands include, but are not limited to neuregulin 1 (NRG)
and neuregulin
2, betacellulin, heparin-binding epidermal growth factor, and epiregulin. The
term includes
biologically active fragments and/or variants of a naturally occurring
polypeptide.
The "HER2-HER3 protein complex" is a noncovalently associated oligomer
containing HER2
receptor and the HER3 receptor. This complex can form when a cell expressing
both of these
receptors is exposed to a HER3 ligand e.g., NRG or when HER2 is
active/overexpressed
The phrase "HER3 activity" or "HER3 activation" as used herein refers to an
increase in
oligomerization (e.g. an increase in HER3 containing complexes), HER3
phosphorylation,
conformational rearrangements (for example those induced by ligands), and HER3
mediated
downstream signaling.
The term "stabilization" or "stabilized" used in the context of HER3 refers to
an antibody or
fragment thereof that directly maintains (locks, tethers, holds,
preferentially binds, favors) the
inactive state or conformation of HER3 without blocking ligand binding to
HER3, such that
ligand binding is no longer able to activate HER3.
The term "ligand-dependent signaling" as used herein refers to the activation
of HER3 via
ligand. HER3 activation is evidenced by increased heterodimerization and/ or
HER3
phosphorylation such that downstream signaling pathways (e.g. PI3K) are
activated. The
antibody or fragment thereof can statistically significantly reduce the amount
of
phosphorylated HER3 in a stimulated cell exposed to an antibody or fragment
thereof relative
to an untreated (control) cell, as measured using the assays described in the
Examples. The
cell which expresses HER3 can be a naturally occurring cell line (e.g. MCF7)
or can be
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recombinantly produced by introducing nucleic acids encoding HER3 protein into
a host cell.
Cell stimulation can occur either via the exogenous addition of an activating
HER3 ligand or
by the endogenous expression of an activating ligand.
The antibody or fragment thereof which "reduces neregulin-induced HER3
activation in a
cell" is one which statistically significantly reduces HER3 tyrosine
phosphorylation relative to
an untreated (control) cell, as measured using the assays described in the
Examples. This can
be determined based on HER3 phosphotyrosine levels following exposure of HER3
to NRG
and the antibody of interest. The cell which expresses HER3 protein can be a
naturally
occurring cell or cell line (e.g. MCF7) or can be recombinantly produced.
The term "ligand-independent signaling" as used herein refers to cellular HER3
activity (e.g
phosphorylation) in the absence of a requirement for ligand binding. For
example, ligand-
independent HER3 activation can be a result of HER2 overexpression or
activating mutations
in HER3 heterodimer partners such as EGFR and HER2. The antibody or fragment
thereof
can statistically significantly reduce the amount of phosphorylated HER3 in a
cell exposed to
an antibody or fragment thereof relative to an untreated (control) cell. The
cell which
expresses HER3 can be a naturally occurring cell line (e.g. SK-Br-3) or can be
recombinantly
produced by introducing nucleic acids encoding HER3 protein into a host cell.
The term "blocks" as used herein refers to stopping or preventing an
interaction or a process,
e.g., stopping ligand-dependent or ligand-independent signaling.
The term "recognize" as used herein refers to an antibody or fragment thereof
that finds and
interacts (e.g., binds) with its epitope in domain 3 of HER3; domain 4 of
HER3; or both
domain 3 and domain 4 of HER3. The epitope can be a linear, non-linear, or
conformational
epitope. For example, an antibody or fragment thereof interacts with amino
acid residues:
335-342, 362-376, 398,400, 424-428, 431, 433-434 and 455 (within domain 3), or
a subset
thereof of HER3. In another example, the antibody or fragment thereof
interacts with at least
one amino acid residue selected from amino acid residues: 329-498 (domain 3),
or a subset
thereof In another example, the antibody or fragment thereof interacts with at
least one amino
acid residue selected from amino acid residues: 499-642 (domain 4), or a
subset thereof. In
another example, the antibody or fragment thereof interacts with at least one
amino acid
residue selected from domain 3 of HER3 (amino acid residues 329-498 of SEQ ID
NO: 1),
and at least one amino acid residue selected from domain 4 (amino acid
residues 499-642 of
SEQ ID NO: 1), or a subset thereof
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The phrase "concurrently binds" as used herein refers to a HER3 ligand that
can bind to a
ligand binding site on the HER3 receptor along with the HER3 antibody or
fragment thereof
This means that both the antibody and ligand can bind to the HER3 receptor
together. For the
sake of illustration only, the HER3 ligand NRG, can bind to the HER3 receptor
along with the
HER3 antibody. Assay to measure concurrent binding of the ligand and antibody
are
described in the Examples section.
The term "fails" as used herein refers to an antibody or fragment thereof that
does not do a
particular event. For example, an antibody or fragment thereof that "fails to
activate signal
transduction" is one that does not trigger signal transduction.
binding, steric hindrance, stabilizing/destabilizing, spatial distribution) an
HER3 epitope and
inhibit signal transduction. A naturally occurring "antibody" is a
glycoprotein comprising at
least two heavy (H) chains and two light (L) chains inter-connected by
disulfide bonds. Each
heavy chain is comprised of a heavy chain variable region (abbreviated herein
as VH) and a
The antibodies can be of any isotype (e.g., IgG, IgE, IgM, IgD, IgA and IgY),
class (e.g.,
IgGl, IgG2, IgG3, IgG4, IgAl and IgA2) or subclass.
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Both the light and heavy chains are divided into regions of structural and
functional
homology. The terms "constant" and "variable" are used functionally. In this
regard, it will be
appreciated that the variable domains of both the light (VL) and heavy (VH)
chain portions
determine antigen recognition and specificity. Conversely, the constant
domains of the light
chain (CL) and the heavy chain (CH1, CH2 or CH3) confer important biological
properties
such as secretion, transplacental mobility, Fc receptor binding, complement
binding, and the
like. By convention the numbering of the constant region domains increases as
they become
more distal from the antigen binding site or amino-terminus of the antibody.
The N-terminus
is a variable region and at the C-terminus is a constant region; the CH3 and
CL domains
actually comprise the carboxy-terminus of the heavy and light chain,
respectively.
The phrase "antibody fragment", as used herein, refers to one or more portions
of an antibody
that retain the ability to specifically interact with (e.g., by binding,
steric hindrance,
stabilizing/destabilizing, spatial distribution) an HER3 epitope and inhibit
signal transduction.
Examples of binding fragments include, but are not limited to, a Fab fragment,
a monovalent
fragment consisting of the VL, VH, CL and CH1 domains; a F(ab)2 fragment, a
bivalent
fragment comprising two Fab fragments linked by a disulfide bridge at the
hinge region; a Fd
fragment consisting of the VH and CH1 domains; a Fv fragment consisting of the
VL and VH
domains of a single arm of an antibody; a dAb fragment (Ward et at., (1989)
Nature 341:544-
546), which consists of a VH domain; and an isolated complementarity
determining region
(CDR).
Furthermore, although the two domains of the Fv fragment, VL and VH, are coded
for by
separate genes, they can be joined, using recombinant methods, by a synthetic
linker that
enables them to be made as a single protein chain in which the VL and VH
regions pair to
form monovalent molecules (known as single chain Fv (scFv); see e.g., Bird et
at., (1988)
Science 242:423-426; and Huston et at., (1988) Proc. Natl. Acad. Sci. 85:5879-
5883). Such
single chain antibodies are also intended to be encompassed within the term
"antibody
fragment". These antibody fragments are obtained using conventional techniques
known to
those of skill in the art, and the fragments are screened for utility in the
same manner as are
intact antibodies.
Antibody fragments can also be incorporated into single domain antibodies,
maxibodies,
minibodies, intrabodies, diabodies, triabodies, tetrabodies, v-NAR and bis-
scFv (see, e.g.,
Hollinger and Hudson, (2005) Nature Biotechnology 23:1126-1136). Antibody
fragments can
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be grafted into scaffolds based on polypeptides such as Fibronectin type III
(Fn3) (see U.S.
Pat. No. 6,703,199, which describes fibronectin polypeptide monobodies).
Antibody fragments can be incorporated into single chain molecules comprising
a pair of
tandem Fv segments (VH-CH1-VH-CH1) which, together with complementary light
chain
polypeptides, form a pair of antigen binding regions (Zapata et at., (1995)
Protein Eng.
8:1057-1062; and U.S. Pat. No. 5,641,870).
The term "epitope" includes any protein determinant capable of specific
binding to an
immunoglobulin or otherwise interacting with a molecule. Epitopic determinants
generally
consist of chemically active surface groupings of molecules such as amino
acids or
carbohydrate or sugar side chains and can have specific three-dimensional
structural
characteristics, as well as specific charge characteristics. An epitope may be
"linear," "non-
linear" or "conformational."
The term "linear epitope" refers to an epitope with all of the points of
interaction between the
protein and the interacting molecule (such as an antibody) occur linearly
along the primary
amino acid sequence of the protein (continuous). Once a desired epitope on an
antigen is
determined, it is possible to generate antibodies to that epitope, e.g., using
the techniques
described in the present invention. Alternatively, during the discovery
process, the generation
and characterization of antibodies may elucidate information about desirable
epitopes. From
this information, it is then possible to competitively screen antibodies for
binding to the same
epitope. An approach to achieve this is to conduct cross-competition studies
to find antibodies
that competitively bind with one another, e.g., the antibodies compete for
binding to the
antigen. A high throughput process for "binning" antibodies based upon their
cross-
competition is described in International Patent Application No. WO
2003/48731. As will be
appreciated by one of skill in the art, practically anything to which an
antibody can
specifically bind could be an epitope. An epitope can comprises those residues
to which the
antibody binds.
The term "non-linear epitope" refers to epitope with non-contiguous amino
acids that form a
three-dimensional structure within a particular domain (e.g., within domain 1,
within domain
2, within domain 3, or within domain 4). In one embodiment, the non-linear
epitope is within
domain 2. The non-linear epitope may also occur between two or more domains
(e.g., the
interface between domains 3-4). Non-linear epitope also refers to non-
contiguous amino acids
that are a result of a three-dimensional structure within a particular domain.
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The term "conformational epitope" refers to an epitope in which discontinuous
amino acids
come together in a three dimensional configuration.. In a conformational
epitope, the points of
interaction occur across amino acid residues on the protein that are separated
from one
another in the sequence. As will be appreciated by one of skill in the art,
the space that is
In one embodiment, the epitope is within domain 3 of HER3. In one embodiment,
the epitope
is a non-linear epitope comprising amino acids residues within domain 3 of
HER3. In one
embodiment, the non-linear epitope compises amino acid residues: 335-342, 362-
376,
In another embodiment, the epitope is within domain 4 of HER3. In one
embodiment, the
epitope comprises at least one amino acid residue selected from domain 4
(amino acid
residues 499-642 of SEQ ID NO: 1), or a subset thereof In one embodiment, the
epitope is a
In another embodiment, the epitope is within domains 3-4 of HER3. In one
embodiment, the
epitope comprises at least one amino acid residue selected from domain 3
(amino acid
Generally, antibodies specific for a particular target antigen will
preferentially recognize an
epitope on the target antigen in a complex mixture of proteins and/or
macromolecules.
epitope mapping techniques, well known in the art. See, e.g., Epitope Mapping
Protocols in
Methods in Molecular Biology, Vol. 66 (Glenn E.Morris, Ed., 1996) Humana
Press, Totowa,
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New Jersey. For example, linear epitopes may be determined by e.g.,
concurrently
synthesizing large numbers of peptides on solid supports, the peptides
corresponding to
portions of the protein molecule, and reacting the peptides with antibodies
while the peptides
are still attached to the supports. Such techniques are known in the art and
described in, e.g.,
U.S. Patent No. 4,708,871 ; Geysen et at., (1984) Proc. Natl. Acad. Sci. USA
8:3998-4002;
Geysen et at., (1985) Proc. Natl. Acad. Sci. USA 82:78-182; Geysen et at.,
(1986) Mol.
Immunol. 23:709-715. Similarly, non-linear and conformational epitopes are
readily
identified by determining spatial conformation of amino acids such as by,
e.g.,
hydrogen/deuterium exchange, x-ray crystallography and two-dimensional nuclear
magnetic
resonance. See, e.g., Epitope Mapping Protocols, supra. Antigenic regions of
proteins can also
be identified using standard antigenicity and hydropathy plots, such as those
calculated using,
e.g., the Omiga version 1.0 software program available from the Oxford
Molecular Group.
This computer program employs the Hopp/Woods method, Hopp et at., (1981) Proc.
Natl.
Acad. Sci USA 78:3824-3828; for determining antigenicity profiles, and the
Kyte-Doolittle
technique, Kyte et at., (1982) J.MoI. Biol. 157:105-132; for hydropathy plots.
The term "binding surface" as used herein refers to multiple contiguous or non-
contiguous
surfaces in a 3D configuration on HER3, e.g., domain 3 of HER3. These surfaces
form part
of the epitope and interact with an antibody or fragment thereof. For example,
a binding
surface can comprise at least two surfaces (e.g., surface A and surface B, see
Figure 4D), at
least three surfaces (e.g., surface A, surface B, and surface C), at least
four surfaces surfaces
(e.g., surface A, surface B, surface C, and surface D), at least five surfaces
(e.g., surface A,
surface B, surface C, surface D, and surface E), at least six surfaces (e.g.,
surface A, surface
B, surface C, surface D, surface E, and surface F), at least seven surfaces
(e.g., surface A,
surface B, surface C, surface D, surface E, surface F, and surface G), at
least eight surfaces
(e.g., surface A, surface B, surface C, surface D, surface E, surface F,
surface G, and surface
H), at least nine surfaces (e.g., surface A, surface B, surface C, surface D,
surface E, surface
F, surface G, surface H, and surface I), or at least ten surfaces (e.g.,
surface A, surface B,
surface C, surface D, surface E, surface F, surface G, surface H, surface I,
and surface J).
The term "binding surface A" as used herein refers to a surface on domain 3 of
HER3
comprising at least one amino acid residue selected from a group consisting of
amino acid
residues 362-376.
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The term "binding surface B" as used herein refers to a surface on domain 3 of
HER3
comprising at least one amino acid residue selected from a group consisting of
amino acid
residues 335-342, 398,400, 424-428, 431, 433-434 and 455.
The phrases "monoclonal antibody" or "monoclonal antibody composition" as used
herein
refers to polypeptides, including antibodies, antibody fragments, bispecific
antibodies, etc.
that have substantially identical to amino acid sequence or are derived from
the same genetic
source. This term also includes preparations of antibody molecules of single
molecular
composition. A monoclonal antibody composition displays a single binding
specificity and
affinity for a particular epitope.
The phrase "human antibody", as used herein, includes antibodies having
variable regions in
which both the framework and CDR regions are derived from sequences of human
origin.
Furthermore, if the antibody contains a constant region, the constant region
also is derived
from such human sequences, e.g., human germline sequences, or mutated versions
of human
germline sequences or antibody containing consensus framework sequences
derived from
human framework sequences analysis, for example, as described in Knappik et
at., (2000) J
MolBio1296:57-86). The structures and locations of immunoglobulin variable
domains, e.g.,
CDRs, may be defined using well known numbering schemes, e.g., the Kabat
numbering
scheme, the Chothia numbering scheme, or a combination of Kabat and Chothia
(see, e.g.,
Sequences of Proteins of Immunological Interest, U.S. Department of Health and
Human
Services (1991), eds. Kabat et at.; Lazikani et at., (1997) J. Mol. Bio.
273:927-948); Kabat et
at., (1991) Sequences of Proteins of Immunological Interest, 5th edit., NIH
Publication no.
91-3242 U.S. Department of Health and Human Services; Chothia et at., (1987)
J. Mol. Biol.
196:901-917; Chothia et at., (1989) Nature 342:877-883; and Al-Lazikani et
at., (1997) J.
Mol. Biol. 273:927-948.
The human antibodies of the invention may include amino acid residues not
encoded by
human sequences (e.g., mutations introduced by random or site-specific
mutagenesis in vitro
or by somatic mutation in vivo, or a conservative substitution to promote
stability or
manufacturing).
The phrase "human monoclonal antibody" as used herein refers to antibodies
displaying a
single binding specificity which have variable regions in which both the
framework and CDR
regions are derived from human sequences. In one embodiment, the human
monoclonal
antibodies are produced by a hybridoma which includes a B cell obtained from a
transgenic
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nonhuman animal, e.g., a transgenic mouse, having a genome comprising a human
heavy
chain transgene and a light chain transgene fused to an immortalized cell.
The phrase "recombinant human antibody", as used herein, includes all human
antibodies that
are prepared, expressed, created or isolated by recombinant means, such as
antibodies isolated
from an animal (e.g., a mouse) that is transgenic or transchromosomal for
human
immunoglobulin genes or a hybridoma prepared therefrom, antibodies isolated
from a host
cell transformed to express the human antibody, e.g., from a transfectoma,
antibodies isolated
from a recombinant, combinatorial human antibody library, and antibodies
prepared,
expressed, created or isolated by any other means that involve splicing of all
or a portion of a
human immunoglobulin gene, sequences to other DNA sequences. Such recombinant
human
antibodies have variable regions in which the framework and CDR regions are
derived from
human germline immunoglobulin sequences. In certain embodiments, however, such
recombinant human antibodies can be subjected to in vitro mutagenesis (or,
when an animal
transgenic for human Ig sequences is used, in vivo somatic mutagenesis) and
thus the amino
acid sequences of the VH and VL regions of the recombinant antibodies are
sequences that,
while derived from and related to human germline VH and VL sequences, may not
naturally
exist within the human antibody germline repertoire in vivo.
Specific binding between two entities means a binding with an equilibrium
constant (KA)
(kon/koff) of at least 102M-1, at least 5x102M-1, at least 103M-1, at least
5x103M-1, at least 104M-
'at least 5x104M-1, at least 105M-1, at least 5x105M-1, at least 106M-1, at
least 5x106M-1, at least
107M-1, at least 5x107M-1, at least 108M-1, at least 5x108M-1, at least 109M-
1, at least 5x109M-1,
at least 1010A4-1, at least 5x1010m-15 at least 1011M-15 at least 5x1011m-15
at least 1012M-1, at
least 5x1012m-15 at least 1013M-1, at least 5x1013 M-1, at least 1014M-15 at
least 5x10141Vf1, at
least 1015M-1, or at least 5x1015M-1.
The phrase "specifically (or selectively) binds" refers to a binding reaction
of a HER3 binding
antibody and and HER3 receptor in a heterogeneous population of proteins and
other
biologics. In addition to the equilibrium constant (KA) noted above, an HER3
binding
antibody of the invention typically also has a dissociation rate constant (KD)
(koff/kon) of less
than 5x10-2M, less than 10-2M, less than 5x10-3M, less than 10-3M, less than
5x10-4M, less
than 10-4M, less than 5x10-5M, less than 10-5M, less than 5x10-6M, less than
10-6M, less than
5x10-7M, less than 10-7M, less than 5x10-8M, less than 10-8M, less than 5x10-
9M, less than 10-
9M, less than 5x10-10NI", less than 10-10M5 less than 5x10-11M, less than 10-
"M, less than 5x10-
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12M, less than 10-12M, less than 5x10-13M, less than 10-13M, less than 5x10-
14M, less than 10
m -
14",
less than 5x10-15M, or less than 10-15M or lower, and binds to HER3 with an
affinity that
is at least two-fold greater than its affinity for binding to a non-specific
antigen (e.g., HSA).
In one embodiment, the antibody or fragment thereof has dissociation constant
(Li) of less
than 3000 pM, less than 2500 pM, less than 2000 pM, less than 1500 pM, less
than 1000 pM,
less than 750 pM, less than 500 pM, less than 250 pM, less than 200 pM, less
than 150 pM,
less than 100 pM, less than 75 pM, less than 10 pM, less than 1 pM as assessed
using a
method described herein or known to one of skill in the art (e.g., a BIAcore
assay, ELISA,
FACS, SET) (Biacore International AB, Uppsala, Sweden).
The term "Kass." or "Ka", as used herein, refers to the association rate of a
particular
antibody-antigen interaction, whereas the term "Ks" or "Kd," as used herein,
refers to the
dissociation rate of a particular antibody-antigen interaction. The term
"KID", as used herein,
refers to the dissociation constant, which is obtained from the ratio of Kd to
Ka (i.e. K4/Ka) and
is expressed as a molar concentration (M). KD values for antibodies can be
determined using
methods well established in the art. A method for determining the KD of an
antibody is by
using surface plasmon resonance, or using a biosensor system such as a Biacore
system.
The term "affinity" as used herein refers to the strength of interaction
between antibody and
antigen at single antigenic sites. Within each antigenic site, the variable
region of the antibody
"arm" interacts through weak non-covalent forces with antigen at numerous
sites; the more
interactions, the stronger the affinity.
The term "avidity" as used herein refers to an informative measure of the
overall stability or
strength of the antibody-antigen complex. It is controlled by three major
factors: antibody
epitope affinity; the valence of both the antigen and antibody; and the
structural arrangement
of the interacting parts. Ultimately these factors define the specificity of
the antibody, that is,
the likelihood that the particular antibody is binding to a precise antigen
epitope.
The term "valency" as used herein refers to the number of potential target
binding sites in a
polypeptide. Each target binding site specifically binds one target molecule
or specific site
(i.e, epitope) on a target molecule. When a polypeptide comprises more than
one target
binding site, each target binding site may specifically bind the same or
different molecules
(e.g., may bind to different molecules, e.g., different antigens, or different
epitopes on the
same molecule).
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The phrase "inhibiting antibody" as used herein refers to an antibody that
binds with HER3
and inhibits the biological activity of HER3 signaling, e.g., reduces,
decreases and/or inhibits
HER3 induced signaling activity, e.g., in a phospho-HER3 or phospho-Akt assay.
Examples
of assays are described in more details in the examples below. Accordingly, an
antibody that
"inhibits" one or more of these HER3 functional properties (e.g., biochemical,
immunochemical, cellular, physiological or other biological activities, or the
like) as
determined according to methodologies known to the art and described herein,
will be
understood to relate to a statistically significant decrease in the particular
activity relative to
that seen in the absence of the antibody (e.g., or when a control antibody of
irrelevant
specificity is present). An antibody that inhibits HER3 activity effects such
a statistically
significant decrease by at least 10% of the measured parameter, by at least
50%, 80% or 90%,
and in certain embodiments an antibody of the invention may inhibit greater
than 95%, 98%
or 99% of HER3 functional activity as evidenced by a reduction in the level of
cellular HER3
phosphorylation.
The phrase "isolated antibody" refers to an antibody that is substantially
free of other
antibodies having different antigenic specificities (e.g., an isolated
antibody that specifically
binds HER3 is substantially free of antibodies that specifically bind antigens
other than
HER3). An isolated antibody that specifically binds HER3 may, however, have
cross-
reactivity to other antigens. Moreover, an isolated antibody may be
substantially free of other
cellular material and/or chemicals.
The phrase "conservatively modified variant" applies to both amino acid and
nucleic acid
sequences. With respect to particular nucleic acid sequences, conservatively
modified
variants refers to those nucleic acids which encode identical or essentially
identical amino
acid sequences, or where the nucleic acid does not encode an amino acid
sequence, to
essentially identical sequences. Because of the degeneracy of the genetic
code, a large
number of functionally identical nucleic acids encode any given protein. For
instance, the
codons GCA, GCC, GCG and GCU all encode the amino acid alanine. Thus, at every
position where an alanine is specified by a codon, the codon can be altered to
any of the
corresponding codons described without altering the encoded polypeptide. Such
nucleic acid
variations are "silent variations," which are one species of conservatively
modified variations.
Every nucleic acid sequence herein which encodes a polypeptide also describes
every possible
silent variation of the nucleic acid. One of skill will recognize that each
codon in a nucleic
acid (except AUG, which is ordinarily the only codon for methionine, and TGG,
which is
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ordinarily the only codon for tryptophan) can be modified to yield a
functionally identical
molecule. Accordingly, each silent variation of a nucleic acid that encodes a
polypeptide is
implicit in each described sequence.
For polypeptide sequences, "conservatively modified variants" include
individual
substitutions, deletions or additions to a polypeptide sequence which result
in the substitution
of an amino acid with a chemically similar amino acid. Conservative
substitution tables
providing functionally similar amino acids are well known in the art. Such
conservatively
modified variants are in addition to and do not exclude polymorphic variants,
interspecies
homologs, and alleles of the invention. The following eight groups contain
amino acids that
are conservative substitutions for one another: 1) Alanine (A), Glycine (G);
2) Aspartic acid
(D), Glutamic acid (E); 3) Asparagine (N), Glutamine (Q); 4) Arginine (R),
Lysine (K); 5)
Isoleucine (I), Leucine (L), Methionine (M), Valine (V); 6) Phenylalanine (F),
Tyrosine (Y),
Tryptophan (W); 7) Serine (S), Threonine (T); and 8) Cysteine (C), Methionine
(M) (see,
e.g., Creighton, Proteins (1984)). In some embodiments, the term "conservative
sequence
modifications" are used to refer to amino acid modifications that do not
significantly affect or
alter the binding characteristics of the antibody containing the amino acid
sequence.
The terms "cross-compete" and "cross-competing" are used interchangeably
herein to mean
the ability of an antibody or fragment thereof to interfere with the binding
of other antibodies
or fragments thereof to HER3 in a standard competitive binding assay.
The ability or extent to which an antibody of fragment thereof is able to
interfere with the
binding of another antibody or fragment thereof to HER3 , and therefore
whether it can be
said to cross-compete according to the invention, can be determined using
standard
competition binding assays. One suitable assay involves the use of the Biacore
technology
(e.g. by using the BIAcore 3000 instrument (Biacore, Uppsala, Sweden)), which
can measure
the extent of interactions using surface plasmon resonance technology. Another
assay for
measuring cross-competing uses an ELISA-based approach.
The term "optimized" as used herein refers to a nucleotide sequence has been
altered to
encode an amino acid sequence using codons that are preferred in the
production cell or
organism, generally a eukaryotic cell, for example, a cell of Pichia, a cell
of Trichoderma, a
Chinese Hamster Ovary cell (CHO) or a human cell. The optimized nucleotide
sequence is
engineered to retain completely or as much as possible the amino acid sequence
originally
encoded by the starting nucleotide sequence, which is also known as the
"parental" sequence.
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Standard assays to evaluate the binding ability of the antibodies toward HER3
of various
species are known in the art, including for example, ELISAs, western blots and
RIAs. Suitable
assays are described in detail in the Examples. The binding kinetics (e.g.,
binding affinity) of
the antibodies also can be assessed by standard assays known in the art, such
as by Biacore
analysis, or FACS relative affinity (Scatchard). Assays to evaluate the
effects of the antibodies
on functional properties of HER3 (e.g., receptor binding assays, modulating
the HER3 signal
pathway) are described in further detail in the Examples.
The phrases "percent identical" or "percent identity," in the context of two
or more nucleic
acids or polypeptide sequences, refers to two or more sequences or
subsequences that are the
same. Two sequences are "substantially identical" if two sequences have a
specified
percentage of amino acid residues or nucleotides that are the same (i.e., 60%
identity,
optionally 65%, 70%, 75%, 80%, 85%, 90%, 95%, or 99% identity over a specified
region, or,
when not specified, over the entire sequence), when compared and aligned for
maximum
correspondence over a comparison window, or designated region as measured
using one of
the following sequence comparison algorithms or by manual alignment and visual
inspection.
Optionally, the identity exists over a region that is at least about 50
nucleotides (or 10 amino
acids) in length, or more preferably over a region that is 100 to 500 or 1000
or more
nucleotides (or 20, 50, 200 or more amino acids) in length.
For sequence comparison, typically one sequence acts as a reference sequence,
to which test
sequences are compared. When using a sequence comparison algorithm, test and
reference
sequences are entered into a computer, subsequence coordinates are designated,
if necessary,
and sequence algorithm program parameters are designated. Default program
parameters can
be used, or alternative parameters can be designated. The sequence comparison
algorithm
then calculates the percent sequence identities for the test sequences
relative to the reference
sequence, based on the program parameters.
A "comparison window", as used herein, includes reference to a segment of any
one of the
number of contiguous positions selected from the group consisting of from 20
to 600, usually
about 50 to about 200, more usually about 100 to about 150 in which a sequence
may be
compared to a reference sequence of the same number of contiguous positions
after the two
sequences are optimally aligned. Methods of alignment of sequences for
comparison are well
known in the art. Optimal alignment of sequences for comparison can be
conducted, e.g., by
the local homology algorithm of Smith and Waterman, (1970) Adv. Appl. Math.
2:482c, by
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the homology alignment algorithm of Needleman and Wunsch, (1970) J. Mol. Biol.
48:443,
by the search for similarity method of Pearson and Lipman, (1988) Proc. Nat'l.
Acad. Sci.
USA 85:2444, by computerized implementations of these algorithms (GAP,
BESTFIT,
FASTA, and TFASTA in the Wisconsin Genetics Software Package, Genetics
Computer
Group, 575 Science Dr., Madison, WI), or by manual alignment and visual
inspection (see,
e.g., Brent et at., (2003) Current Protocols in Molecular Biology).
Two examples of algorithms that are suitable for determining percent sequence
identity and
sequence similarity are the BLAST and BLAST 2.0 algorithms, which are
described in
Altschul et at., (1977) Nuc. Acids Res. 25:3389-3402; and Altschul et at.,
(1990) J. Mol. Biol.
215:403-410, respectively. Software for performing BLAST analyses is publicly
available
through the National Center for Biotechnology Information. This algorithm
involves first
identifying high scoring sequence pairs (HSPs) by identifying short words of
length W in the
query sequence, which either match or satisfy some positive-valued threshold
score T when
aligned with a word of the same length in a database sequence. T is referred
to as the
neighborhood word score threshold (Altschul et at., supra). These initial
neighborhood word
hits act as seeds for initiating searches to find longer HSPs containing them.
The word hits
are extended in both directions along each sequence for as far as the
cumulative alignment
score can be increased. Cumulative scores are calculated using, for nucleotide
sequences, the
parameters M (reward score for a pair of matching residues; always > 0) and N
(penalty score
for mismatching residues; always < 0). For amino acid sequences, a scoring
matrix is used to
calculate the cumulative score. Extension of the word hits in each direction
are halted when:
the cumulative alignment score falls off by the quantity X from its maximum
achieved value;
the cumulative score goes to zero or below, due to the accumulation of one or
more negative-
scoring residue alignments; or the end of either sequence is reached. The
BLAST algorithm
parameters W, T, and X determine the sensitivity and speed of the alignment.
The BLASTN
program (for nucleotide sequences) uses as defaults a wordlength (W) of 11, an
expectation
(E) or 10, M=5, N=-4 and a comparison of both strands. For amino acid
sequences, the
BLASTP program uses as defaults a wordlength of 3, and expectation (E) of 10,
and the
BLOSUM62 scoring matrix (see Henikoff and Henikoff, (1989) Proc. Natl. Acad.
Sci. USA
89:10915) alignments (B) of 50, expectation (E) of 10, M=5, N=-4, and a
comparison of both
strands.
The BLAST algorithm also performs a statistical analysis of the similarity
between two
sequences (see, e.g., Karlin and Altschul, (1993) Proc. Natl. Acad. Sci. USA
90:5873-5787).
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One measure of similarity provided by the BLAST algorithm is the smallest sum
probability
(P(N)), which provides an indication of the probability by which a match
between two
nucleotide or amino acid sequences would occur by chance. For example, a
nucleic acid is
considered similar to a reference sequence if the smallest sum probability in
a comparison of
the test nucleic acid to the reference nucleic acid is less than about 0.2,
more preferably less
than about 0.01, and most preferably less than about 0.001.
The percent identity between two amino acid sequences can also be determined
using the
algorithm of E. Meyers and W. Miller, (1988) Comput. Appl. Biosci. 4:11-17)
which has been
incorporated into the ALIGN program (version 2.0), using a PAM120 weight
residue table, a
gap length penalty of 12 and a gap penalty of 4. In addition, the percent
identity between two
amino acid sequences can be determined using the Needleman and Wunsch (1970)
J. Mol.
Biol. 48:444-453) algorithm which has been incorporated into the GAP program
in the GCG
software package (available at www.gcg.com), using either a Blossom 62 matrix
or a
PAM250 matrix, and a gap weight of 16, 14, 12, 10, 8, 6, or 4 and a length
weight of 1, 2, 3,
4, 5, or 6.
Other than percentage of sequence identity noted above, another indication
that two nucleic
acid sequences or polypeptides are substantially identical is that the
polypeptide encoded by
the first nucleic acid is immunologically cross reactive with the antibodies
raised against the
polypeptide encoded by the second nucleic acid, as described below. Thus, a
polypeptide is
typically substantially identical to a second polypeptide, for example, where
the two peptides
differ only by conservative substitutions. Another indication that two nucleic
acid sequences
are substantially identical is that the two molecules or their complements
hybridize to each
other under stringent conditions, as described below. Yet another indication
that two nucleic
acid sequences are substantially identical is that the same primers can be
used to amplify the
sequence.
The phrase "nucleic acid" is used herein interchangeably with the term
"polynucleotide" and
refers to deoxyribonucleotides or ribonucleotides and polymers thereof in
either single- or
double-stranded form. The term encompasses nucleic acids containing known
nucleotide
analogs or modified backbone residues or linkages, which are synthetic,
naturally occurring,
and non-naturally occurring, which have similar binding properties as the
reference nucleic
acid, and which are metabolized in a manner similar to the reference
nucleotides. Examples
of such analogs include, without limitation, phosphorothioates,
phosphoramidates, methyl
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phosphonates, chiral-methyl phosphonates, 2-0-methyl ribonucleotides, peptide-
nucleic acids
(PNAs).
Unless otherwise indicated, a particular nucleic acid sequence also implicitly
encompasses
conservatively modified variants thereof (e.g., degenerate codon
substitutions) and
complementary sequences, as well as the sequence explicitly indicated.
Specifically, as
detailed below, degenerate codon substitutions may be achieved by generating
sequences in
which the third position of one or more selected (or all) codons is
substituted with mixed-base
and/or deoxyinosine residues (Batzer et at., (1991) Nucleic Acid Res. 19:5081;
Ohtsuka et at.,
(1985) J. Biol. Chem. 260:2605-2608; and Rossolini et at., (1994) Mol. Cell.
Probes 8:91-98).
The phrase "operably linked" refers to a functional relationship between two
or more
polynucleotide (e.g., DNA) segments. Typically, it refers to the functional
relationship of a
transcriptional regulatory sequence to a transcribed sequence. For example, a
promoter or
enhancer sequence is operably linked to a coding sequence if it stimulates or
modulates the
transcription of the coding sequence in an appropriate host cell or other
expression system.
Generally, promoter transcriptional regulatory sequences that are operably
linked to a
transcribed sequence are physically contiguous to the transcribed sequence,
i.e., they are cis-
acting. However, some transcriptional regulatory sequences, such as enhancers,
need not be
physically contiguous or located in close proximity to the coding sequences
whose
transcription they enhance.
The terms "polypeptide" and "protein" are used interchangeably herein to refer
to a polymer
of amino acid residues. The terms apply to amino acid polymers in which one or
more amino
acid residue is an artificial chemical mimetic of a corresponding naturally
occurring amino
acid, as well as to naturally occurring amino acid polymers and non-naturally
occurring amino
acid polymer. Unless otherwise indicated, a particular polypeptide sequence
also implicitly
encompasses conservatively modified variants thereof.
The term "subject" as used herein includes human and non-human animals. Non-
human
animals include all vertebrates, e.g., mammals and non-mammals, such as non-
human
primates, sheep, dog, cow, chickens, amphibians, and reptiles. Except when
noted, the terms
"patient" or "subject" are used herein interchangeably.
The term "anti-cancer agent" as used herein refers to any agent that can be
used to treat a cell
proliferative disorder such as cancer, including cytotoxic agents,
chemotherapeutic agents,
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radiotherapy and radiotherapeutic agents, targeted anti-cancer agents, and
immunotherapeutic
agents.
The term "tumor" as used herein refers to neoplastic cell growth and
proliferation, whether
malignant or benign, and all pre-cancerous and cancerous cells and tissues.
The term "anti-tumor activity" as used herein refers to a reduction in the
rate of tumor cell
proliferation, viability, or metastatic activity. A possible way of showing
anti-tumor activity
is show a decline in growth rate of abnormal cells that arises during therapy
or tumor size
stability or reduction. Such activity can be assessed using accepted in vitro
or in vivo tumor
models, including but not limited to xenograft models, allograft models, MMTV
models, and
other known models known in the art to investigate anti-tumor activity.
The term "malignancy" as used herein refers to a non-benign tumor or a cancer.
The term "cancer" as used herein refers to a malignancy characterized by
deregulated or
uncontrolled cell growth. Exemplary cancers include: carcinomas, sarcomas,
leukemias, and
lymphomas. The term "cancer" includes primary malignant tumors (e.g., those
whose cells
have not migrated to sites in the subject's body other than the site of the
original tumor) and
secondary malignant tumors (e.g., those arising from metastasis, the migration
of tumor cells
to secondary sites that are different from the site of the original tumor).
Various aspects of the invention are described in further detail in the
following sections and
subsections.
Structure and Mechanism of Activation of the HER Receptors
All four HER receptors have an extracellular ligand-binding domain, a single
trans-membrane
domain and a cytoplasmic tyrosine kinase-containing domain. The intracellular
tyrosine
kinase domain of HER receptors is highly conserved, although the kinase domain
of HER3
contains substitutions of critical amino acids and therefore lacks kinase
activity (Guy et at.,
(1994): PNAS 91, 8132-8136). Ligand-induced dimerisation of the HER receptors
induces
activation of the kinase, receptor transphosphorylation on tyrosine residues
in the C-terminal
tail, followed by recruitment and activation of intracellular signalling
effectors (Yarden and
Sliwkowski, (2001) Nature Rev 2, 127-137; Jorissen et at., (2003) Exp Cell Res
284, 31-53.
The crystal structures of the extracellular domains of HERs have provided some
insight into
the process of ligand-induced receptor activation (Schlessinger, (2002) Cell
110, 669-672).
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The extracellular domain of each HER receptor consists of four subdomains:
Subdomain I and
III cooperate in forming the ligand-binding site, whereas subdomain II (and
perhaps also
subdomain IV) participates in receptor dimerisation via direct receptor-
receptor interactions.
In the structures of ligand-bound HER1, a 0 hairpin (termed the dimerisation
loop) in
subdomain II interacts with the dimerisation loop of the partner receptor,
mediating receptor
dimerisation (Garrett et at, (2002) Cell 110, 763-773; Ogiso et at., (2002)
Cell 110, 775-787).
In contrast, in the structures of the inactive HER1, HER3 and HER4, the
dimerisation loop is
engaged in intramolecular interactions with subdomain IV, which prevents
receptor
dimerisation in the absence of ligand (Cho and Leahy, (2002) Science 297, 1330-
1333;
Ferguson et at., (2003) Mol Cell 12, 541-552; Bouyan et at., (2005) PNAS102,
15024-15029).
The structure of HER2 is unique among the HERs. In the absence of a ligand,
HER2 has a
conformation that resembles the ligand-activated state of HER1 with a
protruding
dimerisation loop, available to interact with other HER receptors (Cho et at.,
(2003) Nature
421, 756-760; Garrett et at., (2003) Mol Cell 11, 495-505). This may explain
the enhanced
heterodimerisation capacity of HER2.
Although the HER receptor crystal structures provide a model for HER receptor
homo- and
heterodimerisation, the background for the prevalence of some HER homo- and
heterodimers
over others (Franklin et at., (2004) Cancer Cell 5, 317-328) as well as the
role of each of the
domain in receptor dimerisation and autoinhibition (Burgess et at., (2003) Mol
Cell 12, 541-
552; Mattoon et at., (2004) PNAS101, 923-928) remains somewhat unclear.
HER3 Structure and Epitopes
A conformational epitope to which anti-HER3 antibodies bind, has previously
been described
in PCT/EP2011/064407, and USSN: 61/375,408, both filed August 22, 2011, and
which are
incorporated herein by reference in their entirety. The three dimensional
structure of a
truncated form of HER3 complexed with a HER3 antibody fragment, showed
conformational
epitope comprising domain 2 and domain 4 of HER3.
The present invention provides an additional class of antibodies or fragments
thereof that bind
a non-linear epitope within domain 3 of HER3. These antibodies or fragments
thereof bind
with HER3 to inhibit both ligand dependent and ligand independent signal
transduction.
The present invention further provides a class of antibodies or fragments
thereof that bind
within domains 3-4 of HER3 to inhibit both ligand dependent and ligand
independent signal
transduction. In one embodiment, the class of antibodies or fragments thereof
binds to domain
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3 or domain 4 of HER3 to inhibit both ligand dependent and ligand independent
signal
transduction. In another embodiment, the class of antibodies or fragments
thereof binds to
domain 3 and domain 4 of HER3 to inhibit both ligand dependent and ligand
independent
signal transduction.
The present Examples present the crystal structure of HER3 bound to the Fab
fragment of
M0R12604 determined at 3.38 A resolution.
The three dimensional structure of a truncated form (residues 20-640) of the
extracellular
domain of HER3 complexed with an antibody have been shown. The HER3- M0R12604
Fab
complex was determined at 3.38 A resolution, and shown in Figure 4.
Although not bound to provide a theory, one possible model for the mechanism
of action is
that HER3 typically exists in an inactive (closed, tethered) or active (open)
state. Ligand
binding induces a conformational change such that HER3 exists in the active
(open) state
which is capable of binding heterodimer partners resulting in activation in
downstream
signaling. Antibodies such as MOR12604 bind the inactive (tethered) state of
HER3 and
apparently block the ligand binding site.
Binding within domain 3 by M0R12604 suggests that M0R12604 could function by a
mechanisms selected from the group consisting of blocking HER3 residues
required for ligand
binding, preventing HER3 adopting the active conformation due to steric
hindrance between
the antibody and domains of HER3, preventing HER3 adopting the active
conformation by
reducing the degree of flexibility in HER3 hinge regions (e.g. domain 3),
inducing a
conformational change in domain 3 loop 371-377 that prevents HER3 from
transitioning to
the open conformation, destabilizing HER3 such that it is prone to
degradation, acting as a
partial agonist to accelerate the down regulation of HER3, and by each arm of
M0R12604
binding a molecule of HER3 such that the antibody generates an un-natural HER3
dimer that
is either prone to proteolytic degradation or cannot dimerize with other
receptor tyrosine
kinases
To examine the crystal structure of domian 3 antibodies or fragments thereof
bound to HER3,
crystals of HER3 were prepared by expressing a nucleotide sequence encoding
HER3 or a
variant thereof in a suitable host cell, and then crystallising the purified
protein(s) in the
presence of the relevant HER3 targeted Fab. Preferably the HER3 polypeptide
contains the
extracellular domain (amino acids 20 to 640 of the human polypeptide (SEQ ID
NO: 1) or a
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truncated version thereof, preferably comprising amino acids 20-640) but lacks
the
transmembrane and intracellular domains.
HER3 polypeptides may also be produced as fusion proteins, for example to aid
in extraction
and purification. Examples of fusion protein partners include glutathione-S-
transferase (GST),
histidine (HIS), hexahistidine (6HI5), GAL4 (DNA binding and/or
transcriptional activation
domains) and beta-galactosidase. It may also be convenient to include a
proteolytic cleavage
site between the fusion protein partner and the protein sequence of interest
to allow removal
of fusion protein sequences.
After expression, the proteins may be purified and/or concentrated, for
example by
immobilised metal affinity chromatography, ion-exchange chromatography, and/or
gel
filtration.
The protein(s) may be crystallised using techniques described herein.
Commonly, in a
crystallisation process, a drop containing the protein solution is mixed with
the crystallisation
buffer and allowed to equilibrate in a sealed container. Equilibration may be
achieved by
known techniques such as the "hanging drop" or the "sitting drop" method. In
these methods,
the drop is hung above or sitting beside a much larger reservoir of
crystallization buffer and
equilibration is reached through vapor diffusion. Alternatively, equilibration
may occur by
other methods, for example under oil, through a semi-permeable membrane, or by
free-
interface diffusion (See e.g., Chayen et at., (2008) Nature Methods 5, 147 -
153.
Once the crystals have been obtained, the structure may be solved by known X-
ray diffraction
techniques. Many techniques use chemically modified crystals, such as those
modified by
heavy atom derivatization to approximate phases. In practice, a crystal is
soaked in a solution
containing heavy metal atom salts, or organometallic compounds, e.g., lead
chloride, gold
thiomalate, thimerosal or uranyl acetate, which can diffuse through the
crystal and bind to the
surface of the protein. The location(s) of the bound heavy metal atom(s) can
then be
determined by X-ray diffraction analysis of the soaked crystal. The patterns
obtained on
diffraction of a monochromatic beam of X-rays by the atoms (scattering
centres) of the crystal
can be solved by mathematical equations to give mathematical coordinates. The
diffraction
data are used to calculate an electron density map of the repeating unit of
the crystal. Another
method of obtaining phase information is using a technique known as molecular
replacement.
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In this method, rotational and translational alogrithms are applied to a
search model derived
from a related structure, resulting in an approximate orientation for the
protein of interest (See
Rossmann, (1990) Acta Crystals A 46, 73-82). The electron density maps are
used to establish
the positions of the individual atoms within the unit cell of the crystal
(Blundel et al., (1976)
Protein Crystallography, Academic Press).
The present disclosure describes the three-dimensional structure of HER3 and a
Fab of an
anti-HER3 antibody. The approximate domain boundaries of extracellular domain
of HER3
are as follows; domain 1: amino acids 20-207; domain 2: amino acids 208-328;
domain 3:
amino acids 329-498; and domain 4: amino acids 499-642. The three-dimensional
structure
of HER3 and the antibody allows the identification of target binding sites for
potential HER3
modulators. Preferred target binding sites are those involved in the
activation of HER3. In
one embodiment, the target binding site is located within domain 3 of HER3.
Thus an
antibody or fragment thereof which binds to domain 3 can, for example,
modulate HER3
activation by modifying the relative position of the domain relative to itself
or other HER3
domains. Thus binding an antibody or fragment thereof to amino acid residues
within domain
3 may cause the protein to adopt a configuraton that prevents activation.
In some embodiments, the antibody or fragment thereof binds to a binding
surface of HER3.
This binding surface comprises multiple contiguous or non-contiguous surfaces
in a 3D
configuration that form part of the epitope which interacts with the antibody
or fragment
thereof For example, a binding surface can comprise at least two surfaces
(e.g., surface A
and surface B, see Figure 4D), at least three surfaces (e.g., surface A,
surface B, and surface
C), at least four surfaces surfaces (e.g., surface A, surface B, surface C,
and surface D), at
least five surfaces (e.g., surface A, surface B, surface C, surface D, and
surface E), at least six
surfaces (e.g., surface A, surface B, surface C, surface D, surface E, and
surface F), at least
seven surfaces (e.g., surface A, surface B, surface C, surface D, surface E,
surface F, and
surface G), at least eight surfaces (e.g., surface A, surface B, surface C,
surface D, surface E,
surface F, surface G, and surface H), at least nine surfaces (e.g., surface A,
surface B, surface
C, surface D, surface E, surface F, surface G, surface H, and surface I), or
at least ten surfaces
(e.g., surface A, surface B, surface C, surface D, surface E, surface F,
surface G, surface H,
surface I, and surface J).
In one embodiment, the antibody or fragment thereof binds to binding surface
A. In one
embodiment, the antibody or fragment thereof binds to binding surface B. In
another
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embodiment, the antibody or fragment thereof binds to both binding surface A
and binding
surface B. In one embodiment, binding surface A comprises at least one amino
acid residue
selected from amino acid residues 362-376. In one embodiment, binding surface
B comprises
at least one amino acid residue selected from amino acid residues 335-342,
398,400, 424-428,
431, 433-434 and 455. In another embodiment, the antibody or fragment thereof
binds to
binding surface A, wherein at least one amino acid residue is selected from
amino acid
residues 362-376; and binding surface B, wherein at least one amino acid
residue is selected
from amino acid residues 335-342, 398,400, 424-428, 431, 433-434 and 455.
In some embodiments, the antibody or fragment thereof binds to human HER3
protein having
a non-linear epitope comprising HER3 amino acid residues residues 335-342, 362-
376,
398,400, 424-428, 431, 433-434 and 455 (within domain 3), of SEQ ID NO: 1, or
a subset
thereof In some embodiments, the antibody or fragment thereof binds to amino
acids within
or overlapping amino acid residues 335-342, 362-376, 398,400, 424-428, 431,
433-434 and
455 (within domain 3), of SEQ ID NO: 1, or a subset thereof In some
embodiments, the
antibody or fragment thereof binds to amino acids within (and/or amino acid
sequences
consisting of) amino acids 335-342, 362-376, 398,400, 424-428, 431, 433-434
and 455
(within domain 3), of SEQ ID NO: 1, or a subset thereof
In some embodiments, the antibody or fragment thereof binds to human HER3
protein having
an epitope (linear, non-linear, conformational) comprising HER3 amino acid
residues 499-642
(of domain 4) of SEQ ID NO: 1, or a subset thereof In some embodiments, the
antibody or
fragment thereof binds to amino acids within or overlapping amino acid
residues 499-642 (of
domain 4) of SEQ ID NO: 1, or a subset thereof In some embodiments, the
antibody or
fragment thereof binds to amino acids within (and/or amino acid sequences
consisting of)
amino acids residues 499-642 (of domain 4) of SEQ ID NO: 1, or a subset
thereof, or a subset
thereof
In some embodiments, the antibody or fragment thereof binds to human HER3
protein having
a non-linear epitope comprising HER3 amino acid residues residues 335-342, 362-
376,
398,400, 424-428, 431, 433-434 and 455 (within domain 3) and an epitope
(linear, non-linear,
conformational) comprising HER3 amino acid residues 499-642 (of domain 4) of
SEQ ID
NO: 1, or a subset thereof. In some embodiments, the antibody or fragment
thereof binds to
amino acids within or overlapping amino acid residues 335-342, 362-376,
398,400, 424-428,
431, 433-434 and 455 (within domain 3), of SEQ ID NO: 1 and an epitope
(linear, non-linear,
conformational) comprising HER3 amino acid residues 499-642 (of domain 4) of
SEQ ID
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NO: 1 or a subset thereof In some embodiments, the antibody or fragment
thereof binds to
amino acids within (and/or amino acid sequences consisting of) amino acids 335-
342, 362-
376, 398,400, 424-428, 431, 433-434 and 455 (within domain 3), and an epitope
(linear, non-
linear, conformational) comprising HER3 amino acid residues 499-642 (of domain
4) of SEQ
ID NO: 1 of SEQ ID NO: 1, or a subset thereof.
In some embodiments, the antibody or fragment thereof binds to human HER3
protein having
a epitope (linear, non-linear, conformational) comprising HER3 amino acid
residues within
domain 3 and an epitope (linear, non-linear,conformational) comprising HER3
amino acid
residues within of domain 4 of SEQ ID NO: 1, or a subset thereof In some
embodiments, the
antibody or fragment thereof binds to amino acids within or overlapping amino
acid residues
of domain 3 and amino acids of domain 4 of SEQ ID NO: 1, or a subset thereof.
In some embodiments, the antibody or fragment thereof binds to the inactive
state of the
HER3 receptor, thereby preventing HER3 adopting an active conformation. In
some
embodiments, the antibody or fragment thereof prevents HER3 adopting an active
conformation due to steric hindrance between the antibody or fragment thereof
and domains
of HER3 (e.g., with M0R12604, steric interference with domain 1 of HER3). In
some
embodiments, the antibody or fragment thereof prevents HER3 adopting an active
conformation by reducing the degree of flexibility in domain 3. In some
embodiments, the
antibody or fragment thereof induces a conformational change in domain 3 loop
371-377 of
SEQ ID NO:1 that prevents HER3 from adopting an active conformation. In some
embodiments, the antibody or fragment thereof destabilizes HER3 such that it
is susceptible to
degradation. In some embodiments, the antibody or fragment thereof accelerates
down
regulation of cell surface HER3. In some embodiments, the antibody or fragment
thereof
generates an un-natural HER3 dimer that is susceptible to proteolytic
degradation or unable to
dimerize with other receptor tyrosine kinases.
In some embodiments, the antibody or fragment thereof can bind to either the
active or
inactive state of HER3. In some embodiments, the antibody or fragment thereof
stabilizes the
HER3 receptor in an inactive state such that the HER3 receptor fails to
dimerize with a co-
receptor to form a receptor-receptor complex. The failure to form a receptor-
receptor complex
prevents activation of both ligand-dependent and ligand-independent signal
transduction.
In some embodiments, the antibody or fragment thereof induces dimerization of
HER3 with
HER3 to form an inactive receptor-receptor complex. The formation of the
inactive receptor-
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receptor complex prevents activation of HER3 mediated signal transduction
since HER3 is
sequestered in inactive receptor-receptor complexes.
The depicted structure also allows one to identify specific HER3 amino acid
residues for the
interaction interface of an antibody or fragment thereof (e.g., M0R12604) with
HER3. This
was defined as residues that are within 5A of the M0R12604 protein VH chain.
The residues
are as follows: 11e365, Thr366, Asn369, G1y370, Asp371, Pro372, Trp373,
His374, Lys375,
G1n400, and Lys434. The depicted structure also allows one to identify
specific HER3 amino
acid residues for the interaction interface of an antibody or fragment thereof
(e.g.,
MOR12604) with HER3. This was defined as residues that are within 5A of the
M0R12604
protein VL chain. The residues are as follows: G1y335, Ser336, G1y337, Ser338,
Phe340,
G1n341, Asp362, Leu364, 11e365, Thr366, His374, 11e376, Asn398, G1n400,
Tyr424, Asn425,
Arg426, Phe428, Leu431, Met433, Lys434, Tyr455. As can be seen in Tables 5 and
6
(M0R12604), respectively, both the light and heavy chains are involved in the
antigen
binding protein's binding to amino acid residues within domain 3 of the
epitope.
As such, one of skill in the art, given the present teachings, can predict
which residues and
areas of the antigen binding proteins can be varied without unduly interfering
with the antigen
binding protein's ability to bind to domains 3 and 4 of HER3.
Core interaction interface amino acids were determined as being all amino acid
residues with
at least one atom less than or equal to 5A from the HER3 partner protein. 5A
was chosen as
the core region cutoff distance to allow for atoms within a van der Waals
radius plus a
possible water-mediated hydrogen bond.
In some embodiments, any antigen binding protein that binds to, covers, or
prevents
MOR12604 from interacting with any of the above residues can be employed to
bind to or
neutralize HER3. In some embodiments, the antibodies or fragments thereof
binds to or
interacts with at least one of the following HER3 residues (SEQ ID NO: 1):
11e365, Thr366,
Asn369, G1y370, Asp371, Pro372, Trp373, His374, Lys375, G1n400, and Lys434. In
some
embodiments, the antibodies and fragments thereof binds to or interacts with
at least one of
the following HER3 residues (SEQ ID NO: 1): G1y335, 5er336, G1y337, 5er338,
Phe340,
G1n341, Asp362, Leu364, 11e365, Thr366, His374, 11e376, Asn398, G1n400,
Tyr424, Asn425,
Arg426, Phe428, Leu431, Met433, Lys434, Tyr455. In some embodiments, the
antibodies or
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fragments thereof binds to or interacts with at least one of the following
HER3 residues (SEQ
ID NO: 1): 11e365, Thr366, Asn369, G1y370, Asp371, Pro372, Trp373, His374,
Lys375,
G1n400, Lys434, G1y335, 5er336, G1y337, 5er338, Phe340, G1n341, Asp362,
Leu364, 11e365,
Thr366, His374, 11e376, Asn398, G1n400, Tyr424, Asn425, Arg426, Phe428,
Leu431,
Met433, Lys434, Tyr455. In some embodiments, the antibodies or fragments
thereof binds to
or interacts with a combination of the following HER3 residues (SEQ ID NO: 1):
11e365,
Thr366, Asn369, G1y370, Asp371, Pro372, Trp373, His374, Lys375, G1n400,
Lys434,
G1y335, 5er336, G1y337, 5er338, Phe340, G1n341, Asp362, Leu364, 11e365,
Thr366, His374,
11e376, Asn398, G1n400, Tyr424, Asn425, Arg426, Phe428, Leu431, Met433,
Lys434,
Tyr455. In some embodiments, the antibodies or fragments thereof binds to or
interacts with
all of the following HER3 residues (SEQ ID NO: 1): 11e365, Thr366, Asn369,
G1y370,
Asp371, Pro372, Trp373, His374, Lys375, G1n400, Lys434, G1y335, 5er336,
G1y337, 5er338,
Phe340, G1n341, Asp362, Leu364, 11e365, Thr366, His374, 11e376, Asn398,
G1n400, Tyr424,
Asn425, Arg426, Phe428, Leu431, Met433, Lys434, Tyr455. In some embodiments,
the
antibody or fragment thereof is within 5 angstroms of one or more of the above
residues. In
some embodiments, the antibody or fragment thereof is 5 to 8 angstroms from
one or more of
the above residues. In some embodiments, the antibody or fragment thereof
interacts, blocks,
or is within 8 angstroms of 1, 2, 3, 4, 5, 6, 7, 8,9, 10, 11, 12, 13, 14, 15,
20, 25, 28, 30, 35, 40,
45, or 50 of the above residues.
The availability of 3D structures for the HER3 and the complex of HER3:
M0R12604, for
example, provides the framework to explore other HER3 antibodies in more
detail. The 3D
structure of HER3 allows the epitopes for monoclonal antibodies to be mapped
and their
mode of action inferred, since some inhibit, some stimulate and others have no
effect on cell
growth. The non-linearepitope for M0R12604 has been located to the domain 3 of
HER3.
The availability of the 3D structures of this receptor will facilitate the
determination of the
precise mechanism of action of these inhibitory agents and the design of new
approaches to
interfering with HER3 receptor function. In one embodiment, the antibodies of
the invention
bind to the same non-linear epitope as MOR12604.
In some embodiments, the non-linear epitope bound by any of the antibodies
listed in Table 1
is especially useful. In certain embodiments, a HER3 non-linear epitope can be
utilized to
isolate antibodies of fragments thereof that bind to HER3. In certain
embodiments, a HER3
non-linear epitope can be utilized to generate antibodies or fragments thereof
which bind to
HER3. In certain embodiments, a HER3 non-linear epitope can be utilized as an
immunogen
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to generate antibodies of fragments thereof that bind to the HER3 non-linear
epitope. In
certain embodiments, a HER3 non-linear epitope can be administered to an
animal, and
antibodies that bind to HER3 can subsequently be obtained from the animal.
The present invention also provides a class of antibodies that bind to an
epitope (linear, non-
linear, or conformational) within domains 3-4 of HER3. Examples of such
antibodies or
framents thereof that bind within domains 3-4 are shown in Table 2. The above
methodology
and the methods described in the Example section below, can be also used to
generate domain
3-4 antibodies or fragments thereof complexed to HER3.
In some embodiments, the domain(s)/region(s) containing residues that are in
contact with or
are buried by an antibody can be identified by mutating specific residues in
HER3 (e.g., a
wild-type antigen) and determining whether antibody or fragment thereof can
bind the
mutated or variant HER3 protein or measure changes of affinity from wild-type.
By making a
number of individual mutations, residues that play a direct role in binding or
that are in
sufficiently close proximity to the antibody such that a mutation can affect
binding between
the antibody and antigen can be identified. From a knowledge of these amino
acids, the
domain(s) or region(s) of the antigen (HER3) that contain residues in contact
with the
antibody or covered by the antibody can be elucidated. Mutagenesis using known
techniques
such as alanine-scanning can help define functionally relevant epitopes.
Mutagenesis utilizing
an arginine/glutamic acid scanning protocol can also be employed (see, e.g.,
Nanevicz et at.,
(1995), J. Biol. Chem. 270(37):21619-21625 and Zupnick et at., (2006), J.
Biol. Chem.
281(29):20464-20473). In general, arginine and glutamic acids are substituted
(typically
individually) for an amino acid in the wild-type polypeptide because these
amino acids are
charged and bulky and thus have the potential to disrupt binding between an
antigen binding
protein and an antigen in the region of the antigen where the mutation is
introduced. Arginines
that exist in the wild-type antigen are replaced with glutamic acid. A variety
of such
individual mutants can be obtained and the collected binding results analyzed
to determine
what residues affect binding. A series of mutant HER3 antigens can be created,
with each
mutant antigen having a single mutation. Binding of each mutant HER3 antigen
with various
HER3 antibodies or fragments thereof can be measured and compared to the
ability of the
selected an antibody or fragments thereof to bind wild-type HER3 (SEQ ID NO:
1).
An alteration (for example a reduction or increase) in binding between an
antibody or
fragment thereof and a mutant or variant HER3 as used herein means that there
is a change in
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binding affinity (e.g., as measured by known methods such as Biacore testing
or the bead
based assay described below in the examples), EC50, and/or a change (for
example a
reduction) in the total binding capacity of the antigen binding protein (for
example, as
evidenced by a decrease in Bmax in a plot of antigen binding protein
concentration versus
antigen concentration). A significant alteration in binding indicates that the
mutated residue is
involved in binding to the antibody or fragment thereof
In some embodiments, a significant reduction in binding means that the binding
affinity, EC50,
and/or capacity between an antibody or fragments thereof and a mutant HER3
antigen is
reduced by greater than 10%, greater than 20%, greater than 40%, greater than
50%, greater
than 55%, greater than 60%, greater than 65%, greater than 70%, greater than
75%, greater
than 80%, greater than 85%, greater than 90% or greater than 95% relative to
binding between
the an antibody or fragment thereof and a wild type HER3 (e.g., SEQ ID NO: 1).
In some embodiments, binding of an antibody or fragments thereof is
significantly reduced or
increased for a mutant HER3 protein having one or more (e.g., 1, 2, 3, 4, 5,
6, 7, 8, 9, 10, or
more) mutations as compared to a wild-type HER3 protein (e.g., SEQ ID NO: 1).
Although the variant forms are referenced with respect to the wild-type
sequence shown in
SEQ ID NO: 1, it will be appreciated that in an allelic or splice variants of
HER3 the amino
acids could differ. Antibodies or fragments thereof showing significantly
altered binding (e.g.,
lower or higher binding) for such allelic forms of HER3 are also contemplated.
In addition to the general structural aspects of antibodies, the more specific
interaction
between the paratope and the epitope may be examined through structural
approaches. In one
embodiment, the structure of the CDRs contribute to a paratope, through which
an antibody is
able to bind to an epitope. The shape of such a paratope may be determined in
a number of
ways. Traditional structural examination approaches can be used, such as NMR
or x-ray
crystallography. These approaches can examine the shape of the paratope alone,
or while it is
bound to the epitope. Alternatively, molecular models may be generated in
silico. A structure
can be generated through homology modeling, aided with a commercial package,
such as
InsightII modeling package from Accelrys (San Diego, Calif). Briefly, one can
use the
sequence of the antibody to be examined to search against a database of
proteins of known
structures, such as the Protein Data Bank. After one identifies homologous
proteins with
known structures, these homologous proteins are used as modeling templates.
Each of the
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possible templates can be aligned, thus producing structure based sequence
alignments among
the templates. The sequence of the antibody with the unknown structure can
then be aligned
with these templates to generate a molecular model for the antibody with the
unknown
structure. As will be appreciated by one of skill in the art, there are many
alternative methods
possible paratope will bind to an epitope, but the interaction itself, between
the epitope and
the paratope is a source of great information in the design of variant
antibodies. As
appreciated by one of skill in the art, there are a variety of ways in which
this interaction can
be studied. One way is to use the structural model generated, perhaps as
described above, and
Through the use of these modelled structures, one is able to predict which
residues are the
most important in the interaction between the epitope and the paratope. Thus,
in one
embodiment, one is able to readily select which residues to change in order to
alter the
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characteristics that are desired.
The models determined above can be tested through various techniques. For
example, the
interaction energy can determined with the programs discussed above in order
to determine
As will be appreciated by one of skill in the art, while these models will
provide the guidance
necessary to make the antibodies and variants thereof of the present
embodiments, it may still
be desirable to perform routine testing of the in silico models, perhaps
through in vitro
HER3 Antibodies
The present invention provides a class of antibodies that recognize a non-
linear epitope within
domain 3 of HER3 and inhibit both ligand-dependent and ligand-independent HER3
signal
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Table 1: Examples of HER3 antibodies that bind to a non-linear epitope within
domain 3 of
HER3.
mOR09627
SEQ ID NO: 2 (Kabat) HCDR1 SYAIS
SEQ ID NO: 3 (Kabat) HCDR2 LI I P RYG KA RYAQK FQG
SEQ ID NO: 4 (Kabat) HCDR3 NWPYYYM DF
SEQ ID NO: 5 (Chothia) HCDR 1 GGTFSSY
SEQ ID NO: 6 (Chothia) HCDR2 IPRYGK
SEQ ID NO: 7 (Chothia) HCDR3 NWPYYYM DF
SEQ ID NO: 8 (Kabat) LCDR1 RASQNIVFNLA
SEQ ID NO: 9 (Kabat) LCDR2 DAS N RAT
SEQ ID NO: 10 (Kabat) LCDR3 QQHGSGPTT
SEQ ID NO: 11 (Chothia) LCDR1 SQNIVFN
SEQ ID NO: 12 (Chothia) LCDR2 DAS
SEQ ID NO: 13 (Chothia) LCDR3 HGSGPT
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGLIIPRYGKARYAQKFQ
SEQ ID NO: 14 VH GRVTITADESTSTAYME LSSLRSE
DTAVYYCARNWPYYYMDFWGQGTLVTVSS
DIVLTQSPATLSLSPGERATLSCRASQNIVFN LAWYQQKPGQAP RLLIYDASN RATGVPARFSGSGS
SEQ ID NO: 15 VL GTDFTLTISSLEPEDFAVYYCQQHGSGPTTFGQGTKVEIK
CAGGTGCAATTGGTTCAGTCTGGCGCGGAAGTGAAAAAACCGGGCAGCAGCGTGAAAGTGAG
CTGCAAAGCCTCCGGAGGCACTTTTAGCAGCTATGCGATTAGCTGGGTGCGCCAAGCCCCTGGG
CAGGGTCTCGAGTGGATGGGCCTTATTATTCCTCGTTATGGTAAGGCTCGTTATGCTCAGAAGTT
TCAGGGTCGGGTGACCATTACCGCGGATGAAAGCACCAGCACCGCGTATATGGAACTGAGCAG
CCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTAATTGGCCTTATTATTATATGGATT
SEQ ID NO: 16 DNA VH TTTGGGGCCAAGGCACCCTGGTGACGGTTAGCTCA
GATATCGTGCTGACCCAGAGCCCGGCGACCCTGAGCCTGTCTCCGGGCGAACGTGCGACCCTG
AGCTGCAGAGCGAGCCAGAATATTGTTTTTAATCTGGCTTGGTACCAGCAGAAACCAGGTCAAG
CACCGCGTCTATTAATTTATGATGCTTCTAATCGTGCAACTGGGGTCCCGGCGCGTTTTAGCGGC
TCTGGATCCGGCACGGATTTTACCCTGACCATTAGCAGCCTGGAACCTGAAGACTTTGCGGTTTA
SEQ ID NO: 17 DNA VL
TTATTGCCAGCAGCATGGTTCTGGTCCTACTACCTTTGGCCAGGGTACGAAAGTTGAAATTAAA
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGLIIPRYGKARYAQKFQ
GRVTITADESTSTAYME LSSLRSE DTAVYYCAR N WPYYYM D FWG QGTLVTVSSASTKG PSV F P LAPS
SKSTSGGTAALGCLVK DYFP E PVTVSWN SGALTSGV HTF PAVLQSSG LYS LSSVVTV PSSS LGTQTYI
C
NVNHKPSNTKVDKRVEPKSCDKTHTCPPCPAPELLGGPSVFLEPPKPKDTLMISRTPEVICVVVDVS
HEDPEVKF NWYVDGVEVH NAKTKP RE EQYNSTYRVVSVLTVLH QDW LNG K EYKCKVSN KALPA P I
E KTIS KAKGQP RE PQVYTLP PS RE E MT K N QVSLTCLVKG FYPSD !AVE WESNG QP
ENNYKTTPPVLD
SEQ ID NO: 18 Heavy Chain SDGSF FLYSK LTVDKSRWQQGNVFSCSVMH EA LH N
HYTQKSLSLS PG K
DIVLTQSPATLSLSPGERATLSCRASQNIVFN LAWYQQKPGQAP RLLIYDASN RATGVPARFSGSGS
GTDFTLTISSLEPEDFAVYYCQQHGSGPTTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLL
N NFYPREAKVQWKVDNALQSGNSQESVTEQDSK DSTYSLSSTLTLSKADYEKH KVYACEVTH QG LS
SEQ ID NO: 19 Light Chain SPVTKSFNRGEC
CAGGTGCAATTGGTTCAGTCTGGCGCGGAAGTGAAAAAACCGGGCAGCAGCGTGAAAGTGAG
CTGCAAAGCCTCCGGAGGCACTTTTAGCAGCTATGCGATTAGCTGGGTGCGCCAAGCCCCTGGG
CAGGGTCTCGAGTGGATGGGCCTTATTATTCCTCGTTATGGTAAGGCTCGTTATGCTCAGAAGTT
TCAGGGTCGGGTGACCATTACCGCGGATGAAAGCACCAGCACCGCGTATATGGAACTGAGCAG
CCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTAATTGGCCTTATTATTATATGGATT
TTTGGGGCCAAGGCACCCTGGTGACGGTTAGCTCAGCCTCCACCAAGGGTCCATCGGTCTTCCC
CCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCTGGTCAAGGA
CTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGGCGTGCACACC
TTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCGTGCCCTCCAG
CAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACACCAAGGTGGAC
AAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCAGCACCTGAAC
TCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCATGATCTCCCGG
ACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGTCAAGTTCAAC
TGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGGAGCAGTACAA
CAGCACGTACCGGGTGGTCAGCGTCCTCACCGTCCTGCACCAGGACTGGCTGAATGGCAAGGA
GTACAAGTG CAAGGTCTCCAACAAAG CCCTCCCAG CCCCCATCGAGAAAACCATCTCCAAAG CC
AAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCAAG
AACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCCGTGGAGTGGG
AGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGACTCCGACGGCT
DNA Heavy
CCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGGGAACGTCTTCTC
SEQ ID NO: 20 Chain
ATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTCTCCCTGTCTCCG
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GGTAAA
GATATCGTGCTGACCCAGAGCCCGGCGACCCTGAGCCTGTCTCCGGGCGAACGTGCGACCCTG
AGCTGCAGAGCGAGCCAGAATATTGTTTTTAATCTGGCTTGGTACCAGCAGAAACCAGGTCAAG
CACCGCGTCTATTAATTTATGATGCTTCTAATCGTGCAACTGGGGTCCCGGCGCGTTTTAGCGGC
TCTGGATCCGGCACGGATTTTACCCTGACCATTAGCAGCCTGGAACCTGAAGACTTTGCGGTTTA
TTATTGCCAGCAGCATGGTTCTGGTCCTACTACCTTTGGCCAGGGTACGAAAGTTGAAATTAAAC
GTACGGTGGCCGCTCCCAGCGTGTTCATCTTCCCCCCCAGCGACGAGCAGCTGAAGAGCGGCAC
CGCCAGCGTGGTGTGCCTGCTGAACAACTTCTACCCCCGGGAGGCCAAGGTGCAGTGGAAGGT
GGACAACGCCCTGCAGAGCGGCAACAGCCAGGAAAGCGTCACCGAGCAGGACAGCAAGGACT
CCACCTACAGCCTGAGCAGCACCCTGACCCTGAGCAAGGCCGACTACGAGAAGCACAAGGTGT
DNA Light
ACGCCTGCGAGGTGACCCACCAGGGCCTGTCCAGCCCCGTGACCAAGAGCTTCAACCGGGGCG
SEQ ID NO: 21 Chain AGTGT
MOR12603
SEQ ID NO: 22 (Kabat) HCDR1 SYAIS
SEQ ID NO: 23 (Kabat) HCDR2 LI I P RYG KA RYAQK FQG
SEQ ID NO: 24 (Kabat) HCDR3 NWPYYYM DF
SEQ ID NO: 25 (Chothia) HCDR1 GGTFSSY
SEQ ID NO: 26 (Chothia) HCDR2 IPRYGK
SEQ ID NO: 27 (Chothia) HCDR3 NWPYYYM DF
SEQ ID NO: 28 (Kabat) LCDR1 RASQN IVFN LA
SEQ ID NO: 29 (Kabat) LCDR2 DASN RAT
SEQ ID NO: 30 (Kabat) LCDR3 QQTKNRPPT
SEQ ID NO: 31 (Chothia) LCDR1 SQNIVFN
SEQ ID NO: 32 (Chothia) LCDR2 DAS
SEQ ID NO: 33 (Chothia) LCDR3 TKNRPP
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGLIIPRYGKARYAQKFQ
SEQ ID NO: 34 VH GRVTITADESTSTAYME LSSLRSE
DTAVYYCARNWPYYYMDFWGQGTLVTVSS
DIVLTQSPATLSLSPGERATLSCRASQNIVFN LAWYQQKPGQAP RLLIYDASN RATGVPARFSGSGS
SEQ ID NO: 35 VL GT DFT LTISS LE P E D FAVYYCQQTK N RP PT FGQGTKVE I K
CAGGTGCAATTGGTTCAGTCTGGCGCGGAAGTGAAAAAACCGGGCAGCAGCGTGAAAGTGAG
CTGCAAAGCCTCCGGAGGCACTTTTAGCAGCTATGCGATTAGCTGGGTGCGCCAAGCCCCTGGG
CAGGGTCTCGAGTGGATGGGCCTTATTATTCCTCGTTATGGTAAGGCTCGTTATGCTCAGAAGTT
TCAGGGTCGGGTGACCATTACCGCGGATGAAAGCACCAGCACCGCGTATATGGAACTGAGCAG
CCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTAATTGGCCTTATTATTATATGGATT
SEQ ID NO: 36 DNA VH TTTGGGGCCAAGGCACCCTGGTGACGGTTAGCTCA
GATATCGTGCTGACCCAGAGCCCGGCGACCCTGAGCCTGTCTCCGGGCGAACGTGCGACCCTG
AGCTGCAGAGCGAGCCAGAATATTGTTTTTAATCTGGCTTGGTACCAGCAGAAACCAGGTCAAG
CACCGCGTCTATTAATTTATGATGCTTCTAATCGTGCAACTGGGGTCCCGGCGCGTTTTAGCGGC
TCTGGATCCGGCACGGATTTTACCCTGACCATTAGCAGCCTGGAACCTGAAGACTTTGCGGTGT
ATTATTGCCAGCAGACTAAGAATCGTCCTCCTACCTTTGGCCAGGGTACGAAAGTTGAAATTAA
SEQ ID NO: 37 DNA VL A
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGLIIPRYGKARYAQKFQ
GRVTITADESTSTAYME LSSLRSE DTAVYYCAR N WPYYYM D FWG QGTLVTVSSASTKG PSV F P LAPS
SKSTSGGTAALGCLVK DYFP E PVTVSWN SGALTSGV HTF PAVLQSSG LYS LSSVVTV PSSS LGTQTYI
C
NVNHKPSNTKVDKRVEPKSCDKTHTCPPCPAPELLGGPSVFLEPPKPKDTLMISRTPEVICVVVDVS
HEDPEVKF NWYVDGVEVH NAKTKP RE EQYNSTYRVVSVLTVLH QDW LNG K EYKCKVSN KALPA P I
E KTIS KAKGQP RE PQVYTLP PS RE E MT K N QVSLTCLVKG FYPSD !AVE WESNG QP
ENNYKTTPPVLD
SEQ ID NO: 38 Heavy Chain SDGSF FLYSK LTVDKSRWQQGNVFSCSVMH EA LH N
HYTQKSLSLS PG K
DIVLTQSPATLSLSPGERATLSCRASQNIVFN LAWYQQKPGQAP RLLIYDASN RATGVPARFSGSGS
GTDFTLTISSLEPEDFAVYYCQQTKNRPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLL
N NFYPREAKVQWKVDNALQSGNSQESVTEQDSK DSTYSLSSTLTLSKADYEKH KVYACEVTH QG LS
SEQ ID NO: 39 Light Chain SPVTKSFNRGEC
CAGGTGCAATTGGTTCAGTCTGGCGCGGAAGTGAAAAAACCGGGCAGCAGCGTGAAAGTGAG
CTGCAAAGCCTCCGGAGGCACTTTTAGCAGCTATGCGATTAGCTGGGTGCGCCAAGCCCCTGGG
CAGGGTCTCGAGTGGATGGGCCTTATTATTCCTCGTTATGGTAAGGCTCGTTATGCTCAGAAGTT
TCAGGGTCGGGTGACCATTACCGCGGATGAAAGCACCAGCACCGCGTATATGGAACTGAGCAG
CCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTAATTGGCCTTATTATTATATGGATT
TTTGGGGCCAAGGCACCCTGGTGACGGTTAGCTCAGCCTCCACCAAGGGTCCATCGGTCTTCCC
CCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCTGGTCAAGGA
CTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGGCGTGCACACC
TTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCGTGCCCTCCAG
CAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACACCAAGGTGGAC
AAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCAGCACCTGAAC
DNA Heavy
TCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCATGATCTCCCGG
SEQ ID NO: 40 Chain
ACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGTCAAGTTCAAC
39
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TGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGGAGCAGTACAA
CAGCACGTACCGGGTGGTCAGCGTCCTCACCGTCCTGCACCAGGACTGGCTGAATGGCAAGGA
GTACAAGTG CAAGGTCTCCAACAAAG CCCTCCCAG CCCCCATCGAGAAAACCATCTCCAAAG CC
AAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCAAG
AACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCCGTGGAGTGGG
AGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGACTCCGACGGCT
CCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGGGAACGTCTTCTC
ATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTCTCCCTGTCTCCG
GGTAAA
GATATCGTGCTGACCCAGAGCCCGGCGACCCTGAGCCTGTCTCCGGGCGAACGTGCGACCCTG
AGCTGCAGAGCGAGCCAGAATATTGTTTTTAATCTGGCTTGGTACCAGCAGAAACCAGGTCAAG
CACCGCGTCTATTAATTTATGATGCTTCTAATCGTGCAACTGGGGTCCCGGCGCGTTTTAGCGGC
TCTGGATCCGGCACGGATTTTACCCTGACCATTAGCAGCCTGGAACCTGAAGACTTTGCGGTGT
ATTATTGCCAGCAGACTAAGAATCGTCCTCCTACCTTTGGCCAGGGTACGAAAGTTGAAATTAA
ACGTACGGTGGCCGCTCCCAGCGTGTTCATCTTCCCCCCCAGCGACGAGCAGCTGAAGAGCGGC
ACCGCCAGCGTGGTGTGCCTGCTGAACAACTTCTACCCCCGGGAGGCCAAGGTGCAGTGGAAG
GTGGACAACGCCCTGCAGAGCGGCAACAGCCAGGAAAGCGTCACCGAGCAGGACAGCAAGGA
CTCCACCTACAGCCTGAGCAGCACCCTGACCCTGAGCAAGGCCGACTACGAGAAGCACAAGGT
DNA Light
GTACGCCTGCGAGGTGACCCACCAGGGCCTGTCCAGCCCCGTGACCAAGAGCTTCAACCGGGG
SEQ ID NO: 41 Chain CGAGTGT
MOR12604
SEQ ID NO: 42 (Kabat) HCDR1 SYAIS
SEQ ID NO: 43 (Kabat) HCDR2 LI I P RYG KA RYAQK FQG
SEQ ID NO: 44 (Kabat) HCDR3 NWPYYYM DF
SEQ ID NO: 45 (Chothia) HCDR1 GGTFSSY
SEQ ID NO: 46 (Chothia) HCDR2 IPRYGK
SEQ ID NO: 47 (Chothia) HCDR3 NWPYYYM DF
SEQ ID NO: 48 (Kabat) LCDR1 RASQN IVFN LA
SEQ ID NO: 49 (Kabat) LCDR2 DASN RAT
SEQ ID NO: 50 (Kabat) LCDR3 QQKKSMPLT
SEQ ID NO: 51 (Chothia) LCDR1 SQNIVFN
SEQ ID NO: 52 (Chothia) LCDR2 DAS
SEQ ID NO: 53 (Chothia) LCDR3 KKSMPL
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGLIIPRYGKARYAQKFQ
SEQ ID NO: 54 VH GRVTITADESTSTAYME LSSLRSE
DTAVYYCARNWPYYYMDFWGQGTLVTVSS
DIVLTQSPATLSLSPGERATLSCRASQNIVFN LAWYQQKPGQAP RLLIYDASN RATGVPARFSGSGS
SEQ ID NO: 55 VL GT DFT LTISS LE P E D FAVYYCQQK KSM P LT FGQGTKVE I K
CAGGTGCAATTGGTTCAGTCTGGCGCGGAAGTGAAAAAACCGGGCAGCAGCGTGAAAGTGAG
CTGCAAAGCCTCCGGAGGCACTTTTAGCAGCTATGCGATTAGCTGGGTGCGCCAAGCCCCTGGG
CAGGGTCTCGAGTGGATGGGCCTTATTATTCCTCGTTATGGTAAGGCTCGTTATGCTCAGAAGTT
TCAGGGTCGGGTGACCATTACCGCGGATGAAAGCACCAGCACCGCGTATATGGAACTGAGCAG
CCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTAATTGGCCTTATTATTATATGGATT
SEQ ID NO: 56 DNA VH TTTGGGGCCAAGGCACCCTGGTGACGGTTAGCTCA
GATATCGTGCTGACCCAGAGCCCGGCGACCCTGAGCCTGTCTCCGGGCGAACGTGCGACCCTG
AGCTGCAGAGCGAGCCAGAATATTGTTTTTAATCTGGCTTGGTACCAGCAGAAACCAGGTCAAG
CACCGCGTCTATTAATTTATGATGCTTCTAATCGTGCAACTGGGGTCCCGGCGCGTTTTAGCGGC
TCTGGATCCGGCACGGATTTTACCCTGACCATTAGCAGCCTGGAACCTGAAGACTTTGCGGTGT
ATTATTGCCAGCAGAAGAAGTCTATGCCTCTTACCTTTGGCCAGGGTACGAAAGTTGAAATTAA
SEQ ID NO: 57 DNA VL A
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGLIIPRYGKARYAQKFQ
GRVTITADESTSTAYME LSSLRSE DTAVYYCAR N WPYYYM D FWG QGTLVTVSSASTKG PSV F P LAPS
SKSTSGGTAALGCLVK DYFP E PVTVSWN SGALTSGV HTF PAVLQSSG LYS LSSVVTV PSSS LGTQTYI
C
NVNHKPSNTKVDKRVEPKSCDKTHTCPPCPAPELLGGPSVFLEPPKPKDTLMISRTPEVICVVVDVS
HEDPEVKF NWYVDGVEVH NAKTKP RE EQYNSTYRVVSVLTVLH QDW LNG K EYKCKVSN KALPA P I
E KTIS KAKGQP RE PQVYTLP PS RE E MT K N QVSLTCLVKG FYPSD !AVE WESNG QP
ENNYKTTPPVLD
SEQ ID NO: 58 Heavy Chain SDGSF FLYSK LTVDKSRWQQGNVFSCSVMH EA LH N
HYTQKSLSLS PG K
DIVLTQSPATLSLSPGERATLSCRASQNIVFN LAWYQQKPGQAP RLLIYDASN RATGVPARFSGSGS
GT DFT LTISS LE P E D FAVYYCQQK KSM P LT FGQGTKVE I K RTVAAPSVF I F
PPSDEQLKSGTASVVCLL
N NFYPREAKVQWKVDNALQSGNSQESVTEQDSK DSTYSLSSTLTLSKADYEKH KVYACEVTH QG LS
SEQ ID NO: 59 Light Chain SPVTKSFNRGEC
CAGGTGCAATTGGTTCAGTCTGGCGCGGAAGTGAAAAAACCGGGCAGCAGCGTGAAAGTGAG
CTGCAAAGCCTCCGGAGGCACTTTTAGCAGCTATGCGATTAGCTGGGTGCGCCAAGCCCCTGGG
CAGGGTCTCGAGTGGATGGGCCTTATTATTCCTCGTTATGGTAAGGCTCGTTATGCTCAGAAGTT
TCAGGGTCGGGTGACCATTACCGCGGATGAAAGCACCAGCACCGCGTATATGGAACTGAGCAG
DNA Heavy
CCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTAATTGGCCTTATTATTATATGGATT
SEQ ID NO: 60 Chain
TTTGGGGCCAAGGCACCCTGGTGACGGTTAGCTCAGCCTCCACCAAGGGTCCATCGGTCTTCCC
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CCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCTGGTCAAGGA
CTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGGCGTGCACACC
TTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCGTGCCCTCCAG
CAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACACCAAGGTGGAC
AAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCAGCACCTGAAC
TCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCATGATCTCCCGG
ACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGTCAAGTTCAAC
TGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGGAGCAGTACAA
CAGCACGTACCGGGTGGTCAGCGTCCTCACCGTCCTGCACCAGGACTGGCTGAATGGCAAGGA
GTACAAGTG CAAGGTCTCCAACAAAG CCCTCCCAG CCCCCATCGAGAAAACCATCTCCAAAG CC
AAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCAAG
AACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCCGTGGAGTGGG
AGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGACTCCGACGGCT
CCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGGGAACGTCTTCTC
ATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTCTCCCTGTCTCCG
GGTAAA
GATATCGTGCTGACCCAGAGCCCGGCGACCCTGAGCCTGTCTCCGGGCGAACGTGCGACCCTG
AGCTGCAGAGCGAGCCAGAATATTGTTTTTAATCTGGCTTGGTACCAGCAGAAACCAGGTCAAG
CACCGCGTCTATTAATTTATGATGCTTCTAATCGTGCAACTGGGGTCCCGGCGCGTTTTAGCGGC
TCTGGATCCGGCACGGATTTTACCCTGACCATTAGCAGCCTGGAACCTGAAGACTTTGCGGTGT
ATTATTGCCAGCAGAAGAAGTCTATGCCTCTTACCTTTGGCCAGGGTACGAAAGTTGAAATTAA
ACGTACGGTGGCCGCTCCCAGCGTGTTCATCTTCCCCCCCAGCGACGAGCAGCTGAAGAGCGGC
ACCGCCAGCGTGGTGTGCCTGCTGAACAACTTCTACCCCCGGGAGGCCAAGGTGCAGTGGAAG
GTGGACAACGCCCTGCAGAGCGGCAACAGCCAGGAAAGCGTCACCGAGCAGGACAGCAAGGA
CTCCACCTACAGCCTGAGCAGCACCCTGACCCTGAGCAAGGCCGACTACGAGAAGCACAAGGT
DNA Light
GTACGCCTGCGAGGTGACCCACCAGGGCCTGTCCAGCCCCGTGACCAAGAGCTTCAACCGGGG
SEQ ID NO: 61 Chain CGAGTGT
MOR12605
SEQ ID NO: 62 (Kabat) HCDR1 SYAIS
SEQ ID NO: 63 (Kabat) H C D R2 LI I P RYG KA RYAQK FQG
SEQ ID NO: 64 (Kabat) H C D R3 NWPYYYM DF
SEQ ID NO: 65 (Chothia) HCDR1 GGTFSSY
SEQ ID NO: 66 (Chothia) HCDR2 IPRYGK
SEQ ID NO: 67 (Chothia) HCDR3 NWPYYYM DF
SEQ ID NO: 68 (Kabat) LCDR1 RASQN IVFN LA
SEQ ID NO: 69 (Kabat) LCDR2 DASN RAT
SEQ ID NO: 70 (Kabat) LCDR3 QQFRRKSNT
SEQ ID NO: 71 (Chothia) LCDR1 SQNIVFN
SEQ ID NO: 72 (Chothia) LCDR2 DAS
SEQ ID NO: 73 (Chothia) LCDR3 FRRKSN
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGLIIPRYGKARYAQKFQ
SEQ ID NO: 74 VH GRVTITADESTSTAYME LSSLRSE
DTAVYYCARNWPYYYMDFWGQGTLVTVSS
DIVLTQSPATLSLSPGERATLSCRASQNIVFN LAWYQQKPGQAP RLLIYDASN RATGVPARFSGSGS
SEQ ID NO: 75 VL GTDFTLTISS LE PEDFAVYYCQQF RRKSNTFGQGTKVE IK
CAGGTGCAATTGGTTCAGTCTGGCGCGGAAGTGAAAAAACCGGGCAGCAGCGTGAAAGTGAG
CTGCAAAGCCTCCGGAGGCACTTTTAGCAGCTATGCGATTAGCTGGGTGCGCCAAGCCCCTGGG
CAGGGTCTCGAGTGGATGGGCCTTATTATTCCTCGTTATGGTAAGGCTCGTTATGCTCAGAAGTT
TCAGGGTCGGGTGACCATTACCGCGGATGAAAGCACCAGCACCGCGTATATGGAACTGAGCAG
CCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTAATTGGCCTTATTATTATATGGATT
SEQ ID NO: 76 DNA VH TTTGGGGCCAAGGCACCCTGGTGACGGTTAGCTCA
GATATCGTGCTGACCCAGAGCCCGGCGACCCTGAGCCTGTCTCCGGGCGAACGTGCGACCCTG
AGCTGCAGAGCGAGCCAGAATATTGTTTTTAATCTGGCTTGGTACCAGCAGAAACCAGGTCAAG
CACCGCGTCTATTAATTTATGATGCTTCTAATCGTGCAACTGGGGTCCCGGCGCGTTTTAGCGGC
TCTGGATCCGGCACGGATTTTACCCTGACCATTAGCAGCCTGGAACCTGAAGACTTTGCGGTGT
SEQ ID NO: 77 DNA VL
ATTATTGCCAGCAGTTTCGTCGTAAGTCTAATACCTTTGGCCAGGGTACGAAAGTTGAAATTAAA
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGLIIPRYGKARYAQKFQ
GRVTITADESTSTAYME LSSLRSE DTAVYYCAR N WPYYYM D FWG QGTLVTVSSASTKG PSV F P LAPS
SKSTSGGTAALGCLVK DYFP E PVTVSWN SGALTSGV HTF PAVLQSSG LYS LSSVVTV PSSS LGTQTYI
C
NVNHKPSNTKVDKRVEPKSCDKTHTCPPCPAPELLGGPSVFLEPPKPKDTLMISRTPEVICVVVDVS
HEDPEVKF NWYVDGVEVH NAKTKP RE EQYNSTYRVVSVLTVLH QDW LNG K EYKCKVSN KALPA P I
E KTIS KAKGQP RE PQVYTLP PS RE E MT K N QVSLTCLVKG FYPSD !AVE WESNG QP
ENNYKTTPPVLD
SEQ ID NO: 78 Heavy Chain SDGSF FLYSK LTVDKSRWQQGNVFSCSVMH EA LH N
HYTQKSLSLS PG K
DIVLTQSPATLSLSPGERATLSCRASQNIVFN LAWYQQKPGQAP RLLIYDASN RATGVPARFSGSGS
GT DFTLT ISSLE PEDFAVYYCQQF RRKSNTFGQGTKVE I K RTVAA PSVF I F
PPSDEQLKSGTASVVCLL
N NFYPREAKVQWKVDNALQSGNSQESVTEQDSK DSTYSLSSTLTLSKADYEKH KVYACEVTH QG LS
SEQ ID NO: 79 Light Chain SPVTKSFNRGEC
41
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
CAGGTGCAATTGGTTCAGTCTGGCGCGGAAGTGAAAAAACCGGGCAGCAGCGTGAAAGTGAG
CTGCAAAGCCTCCGGAGGCACTTTTAGCAGCTATGCGATTAGCTGGGTGCGCCAAGCCCCTGGG
CAGGGTCTCGAGTGGATGGGCCTTATTATTCCTCGTTATGGTAAGGCTCGTTATGCTCAGAAGTT
TCAGGGTCGGGTGACCATTACCGCGGATGAAAGCACCAGCACCGCGTATATGGAACTGAGCAG
CCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTAATTGGCCTTATTATTATATGGATT
TTTGGGGCCAAGGCACCCTGGTGACGGTTAGCTCAGCCTCCACCAAGGGTCCATCGGTCTTCCC
CCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCTGGTCAAGGA
CTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGGCGTGCACACC
TTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAG CAGCGTGGTGACCGTGCCCTCCAG
CAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACACCAAGGTGGAC
AAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCAGCACCTGAAC
TCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCATGATCTCCCGG
ACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGTCAAGTTCAAC
TGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGGAGCAGTACAA
CAGCACGTACCGGGTGGTCAGCGTCCTCACCGTCCTGCACCAGGACTGGCTGAATGGCAAGGA
GTACAAGTGCAAGGTCTCCAACAAAG CCCTCCCAG CCCCCATCGAGAAAACCATCTCCAAAG CC
AAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCAAG
AACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCCGTGGAGTGGG
AGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGACTCCGACGGCT
CCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGGGAACGTCTTCTC
DNA Heavy
ATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTCTCCCTGTCTCCG
SEQ ID NO: 80 Chain GGTAAA
GATATCGTGCTGACCCAGAGCCCGGCGACCCTGAGCCTGTCTCCGGGCGAACGTGCGACCCTG
AGCTGCAGAGCGAGCCAGAATATTGTTTTTAATCTGGCTTGGTACCAGCAGAAACCAGGTCAAG
CACCGCGTCTATTAATTTATGATGCTTCTAATCGTGCAACTGGGGTCCCGGCGCGTTTTAGCGGC
TCTGGATCCGGCACGGATTTTACCCTGACCATTAGCAGCCTGGAACCTGAAGACTTTGCGGTGT
ATTATTGCCAGCAGTTTCGTCGTAAGTCTAATACCTTTGGCCAGGGTACGAAAGTTGAAATTAAA
CGTACGGTGGCCGCTCCCAGCGTGTTCATCTTCCCCCCCAGCGACGAGCAGCTGAAGAGCGGCA
CCGCCAGCGTGGTGTGCCTGCTGAACAACTTCTACCCCCGGGAGGCCAAGGTGCAGTGGAAGG
TGGACAACGCCCTGCAGAGCGGCAACAGCCAGGAAAGCGTCACCGAGCAGGACAGCAAGGAC
TCCACCTACAGCCTGAGCAGCACCCTGACCCTGAGCAAGGCCGACTACGAGAAGCACAAGGTG
DNA Light
TACGCCTGCGAGGTGACCCACCAGGGCCTGTCCAGCCCCGTGACCAAGAGCTTCAACCGGGGC
SEQ ID NO: 81 Chain GAGTGT
MOR12606
SEQ ID NO: 82 (Kabat) HCDR1 SYAIS
SEQ ID NO: 83 (Kabat) H C D R2 LI I P RYG KA RYAQK FQG
SEQ ID NO: 84 (Kabat) H C D R3 NWPYYYM DF
SEQ ID NO: 85 (Chothia) HCDR1 GGTFSSY
SEQ ID NO: 86 (Chothia) HCDR2 IPRYGK
SEQ ID NO: 87 (Chothia) HCDR3 NWPYYYM DF
SEQ ID NO: 88 (Kabat) LCDR1 RASQN IVFN LA
SEQ ID NO: 89 (Kabat) LCDR2 DASN RAT
SEQ ID NO: 90 (Kabat) LCDR3 QQTKSKPSPT
SEQ ID NO: 91 (Chothia) LCDR1 SQNIVFN
SEQ ID NO: 92 (Chothia) LCDR2 DAS
SEQ ID NO: 93 (Chothia) LCDR3 TKSKPSP
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGLIIPRYGKARYAQKFQ
SEQ ID NO: 94 VH GRVTITAD ESTSTAYME LSSLRSE
DTAVYYCARNWPYYYMDFWGQGTLVTVSS
DIVLTQSPATLSLSPGERATLSCRASQNIVFN LAWYQQK PG QAP RLLIYDASN RATGVPARFSGSGS
SEQ ID NO: 95 VL GT DFT LTISS LE P E DFAVYYCQQTKSK PSPTFG QGT KVE I K
CAGGTGCAATTGGTTCAGTCTGGCGCGGAAGTGAAAAAACCGGGCAGCAGCGTGAAAGTGAG
CTGCAAAGCCTCCGGAGGCACTTTTAGCAGCTATGCGATTAGCTGGGTGCGCCAAGCCCCTGGG
CAGGGTCTCGAGTGGATGGGCCTTATTATTCCTCGTTATGGTAAGGCTCGTTATGCTCAGAAGTT
TCAGGGTCGGGTGACCATTACCGCGGATGAAAGCACCAGCACCGCGTATATGGAACTGAGCAG
CCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTAATTGGCCTTATTATTATATGGATT
SEQ ID NO: 96 DNA VH TTTGGGGCCAAGGCACCCTGGTGACGGTTAGCTCA
GATATCGTGCTGACCCAGAGCCCGGCGACCCTGAGCCTGTCTCCGGGCGAACGTGCGACCCTG
AGCTGCAGAGCGAGCCAGAATATTGTTTTTAATCTGGCTTGGTACCAGCAGAAACCAGGTCAAG
CACCGCGTCTATTAATTTATGATGCTTCTAATCGTGCAACTGGGGTCCCGGCGCGTTTTAGCGGC
TCTGGATCCGGCACGGATTTTACCCTGACCATTAGCAGCCTGGAACCTGAAGACTTTGCGGTGT
ATTATTGCCAGCAGACTAAGTCTAAGCCTTCTCCTACCTTTGGCCAGGGTACGAAAGTTGAAATT
SEQ ID NO: 97 DNA VL AAA
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGLIIPRYGKARYAQKFQ
GRVTITAD ESTSTAYME LSSLRSE DTAVYYCAR N WPYYYM D FWG QGTLVTVSSASTKG PSV F P
LAPS
SKSTSGGTAALGCLVK DYFP E PVTVSWN SGALTSGV HTF PAVLQSSG LYS LSSVVTV PSSS LGTQTYI
C
SEQ ID NO: 98 Heavy Chain
NVNHKPSNTKVDKRVEPKSCDKTHTCPPCPAPELLGGPSVFLEPPKPKDTLMISRTPEVICVVVDVS
42
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
HEDPEVKF NWYVDGVEVH NAKTKP RE E QYNSTYRVVSVLTVLH QDW LNG K EYKCKVSN KALPA P I
E KTIS KAKGQP RE PQVYTLP PS RE E MT K N QVSLTCLVKG FYPSD !AVE WESNG QP
ENNYKTTPPVLD
SDGSF FLYSK LTVDKSRWQQGNVFSCSVMH EA LH N HYTQKSLSLS PG K
DIVLTQSPATLSLSPGERATLSCRASQNIVFN LAWYQQKPGQAP RLLIYDASN RATGVPARFSGSGS
GT DFT LTISS LE P E D FAVYYCQQTKSK PSPTFGQGT KVE I K RTVAA PSVF I F P PS DE
QLKSGTASVVCLL
N NFYPREAKVQWKVDNALQSGNSQESVTEQDSK DSTYSLSSTLTLSKADYEKH KVYACEVTH QG LS
SEQ ID NO: 99 Light Chain SPVTKSFNRGEC
CAGGTGCAATTGGTTCAGTCTGGCGCGGAAGTGAAAAAACCGGGCAGCAGCGTGAAAGTGAG
CTGCAAAGCCTCCGGAGGCACTTTTAGCAGCTATGCGATTAGCTGGGTGCGCCAAGCCCCTGGG
CAGGGTCTCGAGTGGATGGGCCTTATTATTCCTCGTTATGGTAAGGCTCGTTATGCTCAGAAGTT
TCAGGGTCGGGTGACCATTACCGCGGATGAAAGCACCAGCACCGCGTATATGGAACTGAGCAG
CCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTAATTGGCCTTATTATTATATGGATT
TTTGGGGCCAAGGCACCCTGGTGACGGTTAGCTCAGCCTCCACCAAGGGTCCATCGGTCTTCCC
CCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCTGGTCAAGGA
CTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGGCGTGCACACC
TTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCGTGCCCTCCAG
CAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACACCAAGGTGGAC
AAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCAGCACCTGAAC
TCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCATGATCTCCCGG
ACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGTCAAGTTCAAC
TGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGGAGCAGTACAA
CAGCACGTACCGGGTGGTCAGCGTCCTCACCGTCCTGCACCAGGACTGGCTGAATGGCAAGGA
GTACAAGTG CAAGGTCTCCAACAAAG CCCTCCCAG CCCCCATCGAGAAAACCATCTCCAAAG CC
AAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCAAG
AACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCCGTGGAGTGGG
AGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGACTCCGACGGCT
CCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGGGAACGTCTTCTC
DNA Heavy
ATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTCTCCCTGTCTCCG
SEQ ID NO: 100 Chain GGTAAA
GATATCGTGCTGACCCAGAGCCCGGCGACCCTGAGCCTGTCTCCGGGCGAACGTGCGACCCTG
AGCTGCAGAGCGAGCCAGAATATTGTTTTTAATCTGGCTTGGTACCAGCAGAAACCAGGTCAAG
CACCGCGTCTATTAATTTATGATGCTTCTAATCGTGCAACTGGGGTCCCGGCGCGTTTTAGCGGC
TCTGGATCCGGCACGGATTTTACCCTGACCATTAGCAGCCTGGAACCTGAAGACTTTGCGGTGT
ATTATTGCCAGCAGACTAAGTCTAAGCCTTCTCCTACCTTTGGCCAGGGTACGAAAGTTGAAATT
AAACGTACGGTGGCCGCTCCCAGCGTGTTCATCTTCCCCCCCAGCGACGAGCAGCTGAAGAGCG
GCACCGCCAGCGTGGTGTGCCTGCTGAACAACTTCTACCCCCGGGAGGCCAAGGTGCAGTGGA
AGGTGGACAACGCCCTGCAGAGCGGCAACAGCCAGGAAAGCGTCACCGAGCAGGACAGCAAG
GACTCCACCTACAGCCTGAGCAGCACCCTGACCCTGAGCAAGGCCGACTACGAGAAGCACAAG
DNA Light
GTGTACGCCTGCGAGGTGACCCACCAGGGCCTGTCCAGCCCCGTGACCAAGAGCTTCAACCGG
SEQ ID NO: 101 Chain GGCGAGTGT
MOR12607
SEQ ID NO: 102 (Kabat) HCDR1 SYAIS
SEQ ID NO: 103 (Kabat) HCDR2 LIIPRYGKARYAQKFQG
SEQ ID NO: 104 (Kabat) HCDR3 NWPYYYM DF
SEQ ID NO: 105 (Chothia) HCDR1 GGTFSSY
SEQ ID NO: 106 (Chothia) HCDR2 IPRYGK
SEQ ID NO: 107 (Chothia) HCDR3 NWPYYYM DF
SEQ ID NO: 108 (Kabat) LCDR1 RASQN IVFN LA
SEQ ID NO: 109 (Kabat) LCDR2 DASN RAT
SEQ ID NO: 110 (Kabat) LCDR3 QQVKKRPFT
SEQ ID NO: 111 (Chothia) LCDR1 SQNIVFN
SEQ ID NO: 112 (Chothia) LCDR2 DAS
SEQ ID NO: 113 (Chothia) LCDR3 VKKRPF
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGLIIPRYGKARYAQKFQ
SEQ ID NO: 114 VH GRVTITADESTSTAYME LSSLRSE
DTAVYYCARNWPYYYMDFWGQGTLVTVSS
DIVLTQSPATLSLSPGERATLSCRASQNIVFN LAWYQQKPGQAP RLLIYDASN RATGVPARFSGSGS
SEQ ID NO: 115 VL GT DFT LT ISS LE P E D FAVYYCQQVK K RP FTFGQGTKVE I K
CAGGTGCAATTGGTTCAGTCTGGCGCGGAAGTGAAAAAACCGGGCAGCAGCGTGAAAGTGAG
CTGCAAAGCCTCCGGAGGCACTTTTAGCAGCTATGCGATTAGCTGGGTGCGCCAAGCCCCTGGG
CAGGGTCTCGAGTGGATGGGCCTTATTATTCCTCGTTATGGTAAGGCTCGTTATGCTCAGAAGTT
TCAGGGTCGGGTGACCATTACCGCGGATGAAAGCACCAGCACCGCGTATATGGAACTGAGCAG
CCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTAATTGGCCTTATTATTATATGGATT
SEQ ID NO: 116 DNA VH TTTGGGGCCAAGGCACCCTGGTGACGGTTAGCTCA
GATATCGTGCTGACCCAGAGCCCGGCGACCCTGAGCCTGTCTCCGGGCGAACGTGCGACCCTG
AGCTGCAGAGCGAGCCAGAATATTGTTTTTAATCTGGCTTGGTACCAGCAGAAACCAGGTCAAG
SEQ ID NO: 117 DNA VL
CACCGCGTCTATTAATTTATGATGCTTCTAATCGTGCAACTGGGGTCCCGGCGCGTTTTAGCGGC
43
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
TCTGGATCCGGCACGGATTTTACCCTGACCATTAGCAGCCTGGAACCTGAAGACTTTGCGGTGT
ATTATTGCCAGCAGGTTAAGAAGCGTCCTTTTACCTTTGGCCAGGGTACGAAAGTTGAAATTAA
A
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGLIIPRYGKARYAQKFQ
GRVTITADESTSTAYME LSSLRSE DTAVYYCAR N WPYYYM D FWG QGTLVTVSSASTKG PSV F P LAPS
SKSTSGGTAALGCLVK DYFP E PVTVSWN SGALTSGV HTF PAVLQSSG LYS LSSVVTV PSSS LGTQTYI
C
NVNHKPSNTKVDKRVEPKSCDKTHTCPPCPAPELLGGPSVFLEPPKPKDTLMISRTPEVICVVVDVS
HEDPEVKF NWYVDGVEVH NAKTKP RE EQYNSTYRVVSVLTVLH QDW LNG K EYKCKVSN KALPA P I
E KTIS KAKGQP RE PQVYTLP PS RE E MT K N QVSLTCLVKG FYPSD !AVE WESNG QP
ENNYKTTPPVLD
SEQ ID NO: 118 Heavy Chain SDGSF FLYSK LTVDKSRWQQGNVFSCSVMH EA LH N
HYTQKSLSLS PG K
DIVLTQSPATLSLSPGERATLSCRASQNIVFN LAWYQQKPGQAP RLLIYDASN RATGVPARFSGSGS
GT DFT LT ISS LE P E D FAVYYCQQVK K RP FTFGQGT KVE I KRTVAAPSVF I F P PSDE
QLKSGTASVVCLLN
N FYP REAKVQWKVDNALQSGNSQESVTE QDS K DSTYSLSST LTLSKA DYE K HKVYACEVTH QGLSSP
SEQ ID NO: 119 Light Chain VTKSFNRGEC
CAGGTGCAATTGGTTCAGTCTGGCGCGGAAGTGAAAAAACCGGGCAGCAGCGTGAAAGTGAG
CTGCAAAGCCTCCGGAGGCACTTTTAGCAGCTATGCGATTAGCTGGGTGCGCCAAGCCCCTGGG
CAGGGTCTCGAGTGGATGGGCCTTATTATTCCTCGTTATGGTAAGGCTCGTTATGCTCAGAAGTT
TCAGGGTCGGGTGACCATTACCGCGGATGAAAGCACCAGCACCGCGTATATGGAACTGAGCAG
CCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTAATTGGCCTTATTATTATATGGATT
TTTGGGGCCAAGGCACCCTGGTGACGGTTAGCTCAGCCTCCACCAAGGGTCCATCGGTCTTCCC
CCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCTGGTCAAGGA
CTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGGCGTGCACACC
TTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCGTGCCCTCCAG
CAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACACCAAGGTGGAC
AAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCAGCACCTGAAC
TCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCATGATCTCCCGG
ACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGTCAAGTTCAAC
TGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGGAGCAGTACAA
CAGCACGTACCGGGTGGTCAGCGTCCTCACCGTCCTGCACCAGGACTGGCTGAATGGCAAGGA
GTACAAGTG CAAGGTCTCCAACAAAG CCCTCCCAG CCCCCATCGAGAAAACCATCTCCAAAG CC
AAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCAAG
AACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCCGTGGAGTGGG
AGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGACTCCGACGGCT
CCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGGGAACGTCTTCTC
DNA Heavy
ATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTCTCCCTGTCTCCG
SEQ ID NO: 120 Chain GGTAAA
GATATCGTGCTGACCCAGAGCCCGGCGACCCTGAGCCTGTCTCCGGGCGAACGTGCGACCCTG
AGCTGCAGAGCGAGCCAGAATATTGTTTTTAATCTGGCTTGGTACCAGCAGAAACCAGGTCAAG
CACCGCGTCTATTAATTTATGATGCTTCTAATCGTGCAACTGGGGTCCCGGCGCGTTTTAGCGGC
TCTGGATCCGGCACGGATTTTACCCTGACCATTAGCAGCCTGGAACCTGAAGACTTTGCGGTGT
ATTATTGCCAGCAGGTTAAGAAGCGTCCTTTTACCTTTGGCCAGGGTACGAAAGTTGAAATTAA
ACGTACGGTGGCCGCTCCCAGCGTGTTCATCTTCCCCCCCAGCGACGAGCAGCTGAAGAGCGGC
ACCGCCAGCGTGGTGTGCCTGCTGAACAACTTCTACCCCCGGGAGGCCAAGGTGCAGTGGAAG
GTGGACAACGCCCTGCAGAGCGGCAACAGCCAGGAAAGCGTCACCGAGCAGGACAGCAAGGA
CTCCACCTACAGCCTGAGCAGCACCCTGACCCTGAGCAAGGCCGACTACGAGAAGCACAAGGT
DNA Light
GTACGCCTGCGAGGTGACCCACCAGGGCCTGTCCAGCCCCGTGACCAAGAGCTTCAACCGGGG
SEQ ID NO: 121 Chain CGAGTGT
MOR12608
SEQ ID NO: 122 (Kabat) HCDR1 SYAIS
SEQ ID NO: 123 (Kabat) HCDR2 LIIPRYGKARYAQKFQG
SEQ ID NO: 124 (Kabat) HCDR3 NWPYYYM DF
SEQ ID NO: 125 (Chothia) HCDR1 GGTFSSY
SEQ ID NO: 126 (Chothia) HCDR2 IPRYGK
SEQ ID NO: 127 (Chothia) HCDR3 NWPYYYM DF
SEQ ID NO: 128 (Kabat) LCDR1 RASQN IVFN LA
SEQ ID NO: 129 (Kabat) LCDR2 DASN RAT
SEQ ID NO: 130 (Kabat) LCDR3 QQSYTRPTT
SEQ ID NO: 131 (Chothia) LCDR1 SQNIVFN
SEQ ID NO: 132 (Chothia) LCDR2 DAS
SEQ ID NO: 133 (Chothia) LCDR3 SYTRPT
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGLIIPRYGKARYAQKFQ
SEQ ID NO: 134 VH GRVTITADESTSTAYME LSSLRSE
DTAVYYCARNWPYYYMDFWGQGTLVTVSS
DIVLTQSPATLSLSPGERATLSCRASQNIVFN LAWYQQKPGQAP RLLIYDASN RATGVPARFSGSGS
SEQ ID NO: 135 VL GT DFT LTISS LE P E D FAVYYCQQSYTRPTTFGQGTKVE I K
CAGGTGCAATTGGTTCAGTCTGGCGCGGAAGTGAAAAAACCGGGCAGCAGCGTGAAAGTGAG
SEQ ID NO: 136 DNA VH
CTGCAAAGCCTCCGGAGGCACTTTTAGCAGCTATGCGATTAGCTGGGTGCGCCAAGCCCCTGGG
44
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
CAGGGTCTCGAGTGGATGGGCCTTATTATTCCTCGTTATGGTAAGGCTCGTTATGCTCAGAAGTT
TCAGGGTCGGGTGACCATTACCGCGGATGAAAGCACCAGCACCGCGTATATGGAACTGAGCAG
CCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTAATTGGCCTTATTATTATATGGATT
TTTGGGGCCAAGGCACCCTGGTGACGGTTAGCTCA
GATATCGTGCTGACCCAGAGCCCGGCGACCCTGAGCCTGTCTCCGGGCGAACGTGCGACCCTG
AGCTGCAGAGCGAGCCAGAATATTGTTTTTAATCTGGCTTGGTACCAGCAGAAACCAGGTCAAG
CACCGCGTCTATTAATTTATGATGCTTCTAATCGTGCAACTGGGGTCCCGGCGCGTTTTAGCGGC
TCTGGATCCGGCACGGATTTTACCCTGACCATTAGCAGCCTGGAACCTGAAGACTTTGCGGTGT
SEQ ID NO: 137 DNA VL
ATTATTGCCAGCAGTCTTATACTCGTCCTACTACCTTTGGCCAGGGTACGAAAGTTGAAATTAAA
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGLIIPRYGKARYAQKFQ
GRVTITADESTSTAYME LSSLRSE DTAVYYCAR N WPYYYM D FWG QGTLVTVSSASTKG PSV F P LAPS
SKSTSGGTAALGCLVK DYFP E PVTVSWN SGALTSGV HTF PAVLQSSG LYS LSSVVTV PSSS LGTQTYI
C
NVNHKPSNTKVDKRVEPKSCDKTHTCPPCPAPELLGGPSVFLEPPKPKDTLMISRTPEVICVVVDVS
HEDPEVKF NWYVDGVEVH NAKTKP RE E QYNSTYRVVSVLTVLH QDW LNG K EYKCKVSN KALPA P I
E KTIS KAKG QP RE PQVYTLP PS RE E MT K N QVSLTCLVKG FYPSD !AVE WESNG QP
ENNYKTTPPVLD
SEQ ID NO: 138 Heavy Chain SDGSF FLYSK LTVDKSRWQQGNVFSCSVMH EA LH N
HYTQKSLSLS PG K
DIVLTQSPATLSLSPGERATLSCRASQNIVFN LAWYQQK PG QAP RLLIYDASN RATGVPARFSGSGS
GTDFTLTISS LE PE D FAVYYCQQSYTRPTTFGQGTKVE IKRTVAAPSVFIFPPSDEQLKSGTASVVCLLN
N FYP REAKVQWKVDNALQSGNSQESVTE QDS K DSTYSLSST LTLSKA DYE K HKVYACEVTH QGLSSP
SEQ ID NO: 139 Light Chain VTKSFNRGEC
CAGGTGCAATTGGTTCAGTCTGGCGCGGAAGTGAAAAAACCGGGCAGCAGCGTGAAAGTGAG
CTGCAAAGCCTCCGGAGGCACTTTTAGCAGCTATGCGATTAGCTGGGTGCGCCAAGCCCCTGGG
CAGGGTCTCGAGTGGATGGGCCTTATTATTCCTCGTTATGGTAAGGCTCGTTATGCTCAGAAGTT
TCAGGGTCGGGTGACCATTACCGCGGATGAAAGCACCAGCACCGCGTATATGGAACTGAGCAG
CCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTAATTGGCCTTATTATTATATGGATT
TTTGGGGCCAAGGCACCCTGGTGACGGTTAGCTCAGCCTCCACCAAGGGTCCATCGGTCTTCCC
CCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCTGGTCAAGGA
CTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGGCGTGCACACC
TTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCGTGCCCTCCAG
CAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACACCAAGGTGGAC
AAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCAGCACCTGAAC
TCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCATGATCTCCCGG
ACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGTCAAGTTCAAC
TGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGGAGCAGTACAA
CAGCACGTACCGGGTGGTCAGCGTCCTCACCGTCCTGCACCAGGACTGGCTGAATGGCAAGGA
GTACAAGTG CAAGGTCTCCAACAAAG CCCTCCCAG CCCCCATCGAGAAAACCATCTCCAAAG CC
AAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCAAG
AACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCCGTGGAGTGGG
AGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGACTCCGACGGCT
CCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGGGAACGTCTTCTC
DNA Heavy
ATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTCTCCCTGTCTCCG
SEQ ID NO: 140 Chain GGTAAA
GATATCGTGCTGACCCAGAGCCCGGCGACCCTGAGCCTGTCTCCGGGCGAACGTGCGACCCTG
AGCTGCAGAGCGAGCCAGAATATTGTTTTTAATCTGGCTTGGTACCAGCAGAAACCAGGTCAAG
CACCGCGTCTATTAATTTATGATGCTTCTAATCGTGCAACTGGGGTCCCGGCGCGTTTTAGCGGC
TCTGGATCCGGCACGGATTTTACCCTGACCATTAGCAGCCTGGAACCTGAAGACTTTGCGGTGT
ATTATTGCCAGCAGTCTTATACTCGTCCTACTACCTTTGGCCAGGGTACGAAAGTTGAAATTAAA
CGTACGGTGGCCGCTCCCAGCGTGTTCATCTTCCCCCCCAGCGACGAGCAGCTGAAGAGCGGCA
CCGCCAGCGTGGTGTGCCTGCTGAACAACTTCTACCCCCGGGAGGCCAAGGTGCAGTGGAAGG
TGGACAACGCCCTGCAGAGCGGCAACAGCCAGGAAAGCGTCACCGAGCAGGACAGCAAGGAC
TCCACCTACAGCCTGAGCAGCACCCTGACCCTGAGCAAGGCCGACTACGAGAAGCACAAGGTG
DNA Light
TACGCCTGCGAGGTGACCCACCAGGGCCTGTCCAGCCCCGTGACCAAGAGCTTCAACCGGGGC
SEQ ID NO: 141 Chain GAGTGT
MOR14533
SEQ ID NO: 142 (Kabat) HCDR1 SYAIS
SEQ ID NO: 143 (Kabat) H C D R2 LIIPRYGKARYAQKFQG
SEQ ID NO: 144 (Kabat) H CD R3 NWPYYYM DF
SEQ ID NO: 145 (Chothia) HCDR1 GGTFSSY
SEQ ID NO: 146 (Chothia) HCDR2 IPRYGK
SEQ ID NO: 147 (Chothia) HCDR3 NWPYYYM DF
SEQ ID NO: 148 (Kabat) LCDR1 RASQN IVFN LA
SEQ ID NO: 149 (Kabat) LCDR2 DASN RAT
SEQ ID NO: 150 (Kabat) LCDR3 QQTKSKPSPT
SEQ ID NO: 151 (Chothia) LCDR1 SQNIVFN
SEQ ID NO: 152 (Chothia) LCDR2 DAS
SEQ ID NO: 153 (Chothia) LCDR3 TKSKPSP
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGLIIPRYGKARYAQKFQ
SEQ ID NO: 154 VH GRVTITADESTSTAYME LSSLRSE
DTAVYYCARNWPYYYMDFWGQGTLVTVSS
E IVLTQSPATLSLSPGE RATLSCRASQN IVFN LAWYQQKPGQAPRLLIYDASN RATG I PARFSGSGSG
SEQ ID NO: 155 VL TDFTLTISSLEPEDFAVYYCQQTKSKPSPTFGQGTKVEIK
CAGGTGCAATTGGTTCAGTCTGGCGCGGAAGTGAAAAAACCGGGCAGCAGCGTGAAAGTGAG
CTGCAAAGCCTCCGGAGGCACTTTTAGCAGCTATGCGATTAGCTGGGTGCGCCAAGCCCCTGGG
CAGGGTCTCGAGTGGATGGGCCTTATTATTCCTCGTTATGGTAAGGCTCGTTATGCTCAGAAGTT
TCAGGGTCGGGTGACCATTACCGCGGATGAAAGCACCAGCACCGCGTATATGGAACTGAGCAG
CCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTAATTGGCCTTATTATTATATGGATT
SEQ ID NO: 156 DNA VH TTTGGGGCCAAGGCACCCTGGTGACGGTTAGCTCA
GAGATCGTGCTGACCCAGAGCCCGGCGACCCTGAGCCTGTCTCCGGGCGAACGTGCGACCCTG
AGCTGCAGAGCGAGCCAGAATATTGTTTTTAATCTGGCTTGGTACCAGCAGAAACCAGGTCAAG
CACCGCGTCTATTAATTTATGATGCTTCTAATCGTGCAACTGGGATCCCGGCGCGTTTTAGCGGC
TCTGGATCCGGCACGGATTTTACCCTGACCATTAGCAGCCTGGAACCTGAAGACTTTGCGGTGT
ATTATTGCCAGCAGACTAAGTCTAAGCCTTCTCCTACCTTTGGCCAGGGTACGAAAGTTGAAATT
SEQ ID NO: 157 DNA VL AAA
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGLIIPRYGKARYAQKFQ
GRVTITADESTSTAYME LSSLRSE DTAVYYCARNWPYYYMDFWGQGTLVTVSSASTKGPSVFPLAPS
SKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYIC
NVNHKPSNTKVDKRVEPKSCDKTHTCPPCPAPELLGGPSVFLEPPKPKDTLMISRTPEVICVVVDVS
HEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPI
EKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLD
SEQ ID NO: 158 Heavy Chain
SDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK
E IVLTQSPATLSLSPGE RATLSCRASQN IVFN LAWYQQKPGQAPRLLIYDASN RATG I PARFSGSGSG
TDFTLTISSLEPEDFAVYYCQQTKSKPSPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLN
NFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP
SEQ ID NO: 159 Light Chain VTKSFNRGEC
CAGGTGCAATTGGTTCAGTCTGGCGCGGAAGTGAAAAAACCGGGCAGCAGCGTGAAAGTGAG
CTGCAAAGCCTCCGGAGGCACTTTTAGCAGCTATGCGATTAGCTGGGTGCGCCAAGCCCCTGGG
CAGGGTCTCGAGTGGATGGGCCTTATTATTCCTCGTTATGGTAAGGCTCGTTATGCTCAGAAGTT
TCAGGGTCGGGTGACCATTACCGCGGATGAAAGCACCAGCACCGCGTATATGGAACTGAGCAG
CCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTAATTGGCCTTATTATTATATGGATT
TTTGGGGCCAAGGCACCCTGGTGACGGTTAGCTCAGCCTCCACCAAGGGTCCATCGGTCTTCCC
CCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCTGGTCAAGGA
CTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGGCGTGCACACC
TTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCGTGCCCTCCAG
CAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACACCAAGGTGGAC
AAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCAGCACCTGAAC
TCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCATGATCTCCCGG
ACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGTCAAGTTCAAC
TGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGGAGCAGTACAA
CAGCACGTACCGGGTGGTCAGCGTCCTCACCGTCCTGCACCAGGACTGGCTGAATGGCAAGGA
GTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCATCTCCAAAGCC
AAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCAAG
AACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCCGTGGAGTGGG
AGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGACTCCGACGGCT
CCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGGGAACGTCTTCTC
DNA Heavy
ATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTCTCCCTGTCTCCG
SEQ ID NO: 160 Chain GGTAAA
GAGATCGTGCTGACCCAGAGCCCGGCGACCCTGAGCCTGTCTCCGGGCGAACGTGCGACCCTG
AGCTGCAGAGCGAGCCAGAATATTGTTTTTAATCTGGCTTGGTACCAGCAGAAACCAGGTCAAG
CACCGCGTCTATTAATTTATGATGCTTCTAATCGTGCAACTGGGATCCCGGCGCGTTTTAGCGGC
TCTGGATCCGGCACGGATTTTACCCTGACCATTAGCAGCCTGGAACCTGAAGACTTTGCGGTGT
ATTATTGCCAGCAGACTAAGTCTAAGCCTTCTCCTACCTTTGGCCAGGGTACGAAAGTTGAAATT
AAACGTACGGTGGCCGCTCCCAGCGTGTTCATCTTCCCCCCCAGCGACGAGCAGCTGAAGAGCG
GCACCGCCAGCGTGGTGTGCCTGCTGAACAACTTCTACCCCCGGGAGGCCAAGGTGCAGTGGA
AGGTGGACAACGCCCTGCAGAGCGGCAACAGCCAGGAAAGCGTCACCGAGCAGGACAGCAAG
GACTCCACCTACAGCCTGAGCAGCACCCTGACCCTGAGCAAGGCCGACTACGAGAAGCACAAG
DNA Light
GTGTACGCCTGCGAGGTGACCCACCAGGGCCTGTCCAGCCCCGTGACCAAGAGCTTCAACCGG
SEQ ID NO: 161 Chain GGCGAGTGT
MOR14534
SEQ ID NO: 162 (Kabat) HCDR1 SYAIS
SEQ ID NO: 163 (Kabat) HCDR2 LIIPRYGKARYAQKFQG
SEQ ID NO: 164 (Kabat) HCDR3 NWPYYYMDF
SEQ ID NO: 165 (Chothia) HCDR1 GGTFSSY
SEQ ID NO: 166 (Chothia) HCDR2 IPRYGK
SEQ ID NO: 167 (Chothia) HCDR3 NWPYYYMDF
SEQ ID NO: 168 (Kabat) LCDR1 RASQN IVFN LA
46
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
SEQ ID NO: 169 (Kabat) LCDR2 DASN RAT
SEQ ID NO: 170 (Kabat) LCDR3 QQTKN RP PT
SEQ ID NO: 171 (Chothia) LCDR1 SQNIVFN
SEQ ID NO: 172 (Chothia) LCDR2 DAS
SEQ ID NO: 173 (Chothia) LCDR3 TKNRPP
QVQLVQSGAEVKKPGSSVKVSCKASGGTESSYAISWVRQAPGQGLEWMGLIIPRYGKARYAQKFQ
SEQ ID NO: 174 VH GRVTITADESTSTAYME LSSLRSE
DTAVYYCARNWPYYYMDFWGQGTLVTVSS
E IVLTQSPATLSLSPGE RATLSCRASQN IVFN LAWYQQK PG QAPRLLIYDASN RATG I PARFSGSGSG
SEQ ID NO: 175 VL T DFTLT ISS LE P E D FAVYYCQQT K N RP PT FG QGTKVE I
K
CAGGTGCAATTGGTTCAGTCTGGCGCGGAAGTGAAAAAACCGGGCAGCAGCGTGAAAGTGAG
CTGCAAAGCCTCCGGAGGCACTTTTAGCAGCTATGCGATTAGCTGGGTGCGCCAAGCCCCTGGG
CAGGGTCTCGAGTGGATGGGCCTTATTATTCCTCGTTATGGTAAGGCTCGTTATGCTCAGAAGTT
TCAGGGTCGGGTGACCATTACCGCGGATGAAAGCACCAGCACCGCGTATATGGAACTGAGCAG
CCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTAATTGGCCTTATTATTATATGGATT
SEQ ID NO: 176 DNA VH TTTGGGGCCAAGGCACCCTGGTGACGGTTAGCTCA
GAGATCGTGCTGACCCAGAGCCCGGCGACCCTGAGCCTGTCTCCGGGCGAACGTGCGACCCTG
AGCTGCAGAGCGAGCCAGAATATTGTTTTTAATCTGGCTTGGTACCAGCAGAAACCAGGTCAAG
CACCGCGTCTATTAATTTATGATGCTTCTAATCGTGCAACTGGGATCCCGGCGCGTTTTAGCGGC
TCTGGATCCGGCACGGATTTTACCCTGACCATTAGCAGCCTGGAACCTGAAGACTTTGCGGTGT
ATTATTGCCAGCAGACTAAGAATCGTCCTCCTACCTTTGGCCAGGGTACGAAAGTTGAAATTAA
SEQ ID NO: 177 DNA VL A
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGLIIPRYGKARYAQKFQ
GRVTITADESTSTAYME LSSLRSE DTAVYYCAR N WPYYYM D FWG QGTLVTVSSASTKG PSV F P LAPS
SKSTSGGTAALGCLVK DYFP E PVTVSWN SGALTSGV HTF PAVLQSSG LYS LSSVVTV PSSS LGTQTYI
C
NVNHKPSNTKVDKRVEPKSCDKTHTCPPCPAPELLGGPSVFLEPPKPKDTLMISRTPEVICVVVDVS
HEDPEVKF NWYVDGVEVH NAKTKP RE E QYNSTYRVVSVLTVLH QDW LNG K EYKCKVSN KALPA P I
E KTIS KAKG QP RE PQVYTLP PS RE E MT K N QVSLTCLVKG FYPSD !AVE WESNG QP
ENNYKTTPPVLD
SEQ ID NO: 178 Heavy Chain SDGSF FLYSK LTVDKSRWQQGNVFSCSVMH EA LH N
HYTQKSLSLS PG K
E IVLTQSPATLSLSPGE RATLSCRASQN IVFN LAWYQQK PG QAPRLLIYDASN RATG I PARFSGSGSG
T DFTLT ISS LE P E D FAVYYCQQT K N RP PT FG QGTKVE I K RTVAAPSVF I F
PPSDEQLKSGTASVVCLLN
N FYP REAKVQWKVDNALQSGNSQESVTE QDS K DSTYSLSST LTLSKA DYE K HKVYACEVTH QGLSSP
SEQ ID NO: 179 Light Chain VTKSFNRGEC
CAGGTGCAATTGGTTCAGTCTGGCGCGGAAGTGAAAAAACCGGGCAGCAGCGTGAAAGTGAG
CTGCAAAGCCTCCGGAGGCACTTTTAGCAGCTATGCGATTAGCTGGGTGCGCCAAGCCCCTGGG
CAGGGTCTCGAGTGGATGGGCCTTATTATTCCTCGTTATGGTAAGGCTCGTTATGCTCAGAAGTT
TCAGGGTCGGGTGACCATTACCGCGGATGAAAGCACCAGCACCGCGTATATGGAACTGAGCAG
CCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTAATTGGCCTTATTATTATATGGATT
TTTGGGGCCAAGGCACCCTGGTGACGGTTAGCTCAGCCTCCACCAAGGGTCCATCGGTCTTCCC
CCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCTGGTCAAGGA
CTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGGCGTGCACACC
TTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAG CAGCGTGGTGACCGTGCCCTCCAG
CAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACACCAAGGTGGAC
AAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCAGCACCTGAAC
TCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCATGATCTCCCGG
ACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGTCAAGTTCAAC
TGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGGAGCAGTACAA
CAGCACGTACCGGGTGGTCAGCGTCCTCACCGTCCTGCACCAGGACTGGCTGAATGGCAAGGA
GTACAAGTGCAAGGTCTCCAACAAAG CCCTCCCAG CCCCCATCGAGAAAACCATCTCCAAAG CC
AAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCAAG
AACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCCGTGGAGTGGG
AGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGACTCCGACGGCT
CCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGGGAACGTCTTCTC
DNA Heavy
ATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTCTCCCTGTCTCCG
SEQ ID NO: 180 Chain GGTAAA
GAGATCGTGCTGACCCAGAGCCCGGCGACCCTGAGCCTGTCTCCGGGCGAACGTGCGACCCTG
AGCTGCAGAGCGAGCCAGAATATTGTTTTTAATCTGGCTTGGTACCAGCAGAAACCAGGTCAAG
CACCGCGTCTATTAATTTATGATGCTTCTAATCGTGCAACTGGGATCCCGGCGCGTTTTAGCGGC
TCTGGATCCGGCACGGATTTTACCCTGACCATTAGCAGCCTGGAACCTGAAGACTTTGCGGTGT
ATTATTGCCAGCAGACTAAGAATCGTCCTCCTACCTTTGGCCAGGGTACGAAAGTTGAAATTAA
ACGTACGGTGGCCGCTCCCAGCGTGTTCATCTTCCCCCCCAGCGACGAGCAG CTGAAGAGCGGC
ACCGCCAGCGTGGTGTGCCTGCTGAACAACTTCTACCCCCGGGAGGCCAAGGTGCAGTGGAAG
GTGGACAACGCCCTGCAGAGCGGCAACAGCCAGGAAAG CGTCACCGAGCAGGACAGCAAGGA
CTCCACCTACAGCCTGAGCAGCACCCTGACCCTGAGCAAGGCCGACTACGAGAAGCACAAGGT
DNA Light
GTACGCCTGCGAGGTGACCCACCAGGGCCTGTCCAGCCCCGTGACCAAGAGCTTCAACCGGGG
SEQ ID NO: 181 Chain CGAGTGT
47
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
Table 2: Examples of HER3 antibodies that bind to amino acids within domains 3-
4 of HER3.
MOR12514
SEQ ID NO: 182 (Kabat) HCDR1 SYDI H
SEQ ID NO: 183 (Kabat) HCDR2 RI DPYSG NT NYAQK F QG
SEQ ID NO: 184 (Kabat) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 185 (Chothia) HCDR1 GYTFTSY
SEQ ID NO: 186 (Chothia) HCDR2 DPYSGN
SEQ ID NO: 187 (Chothia) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 188 (Kabat) LCDR1 TGTSSDVGTYNQVS
SEQ ID NO: 189 (Kabat) LCDR2 GVSKRPS
SEQ ID NO: 190 (Kabat) LCDR3 QVRDMSLFDV
SEQ ID NO: 191 (Chothia) LCDR1 TSSDVGTYN Q
SEQ ID NO: 192 (Chothia) LCDR2 GVS
SEQ ID NO: 193 (Chothia) LCDR3 RDMSLFD
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPGQG LEW MG RI DPYSGNTNYAQKF
5E0 ID NO: 194 VH QG RVTMTR DTS I STAYM E LS R LRS E
DTAVYYCARGSFYTRDSYFDVWGQGTLVTVSS
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
SEQ ID NO: 195 VL KSGNTASLTISGLQAEDEADYYCQVRDMSLFDVFGGGTKLTVL
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
SEQ ID NO: 196 DNA VH TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCCAGGTTCGTGACATGTCTCTGTTCGACGTGTTTGGCGGCGGCACGA
SEQ ID NO: 197 DNA VL AGTTAACCGTCCTA
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPGQG LEW MG RI DPYSGNTNYAQK F
QG RVTMTR DTS I STAYM E LS R LRS E DTAVYYCARGS FYTR DSYF DVWG QGTLVTVSSASTKG
PSV F P
LA PSS KSTSG GTAALG C LV K DYF P E PVTVSW NSGALTSGV HTF PAV LQSSG LYS LSSVVTV
PSSS LGT
QTYICNVN H KPSNTKVDKRVEP KSCD KT HTCP P CPAP E LLGG PSVF LFP PK PKDTLM IS RTP
EVTCVV
VDVSH E DP E VK F N WYVDGVEVH NAKTK P RE EQYNSTYRVVSVLTVLHQDW LNG K EYKCKVS N
KA L
PAP I E KTISKAKGQP RE PQVYTLP PSREE MTK NQVS LTCLVKG FY PSD !AVE WES NGQP E N
NYKTTPP
SEQ ID NO: 198 Heavy Chain VLDSDGS F F LYSK LTVD KS RWQQG NVFSCSVM H EA
LH N HYTQKSLSLSPGK
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
KSGNTASLTISGLQAEDEADYYCQVRDMSLF DVFGGGTK LTVLGQP KAAPSVTLFP PSSE ELQAN KA
TLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNN KYAASSYLSLTP EQW KS H RSYSCQVT H
SEQ ID NO: 199 Light Chain EGSTVEKTVAPTECS
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCAGCCTCCACCAAGGGTCCAT
CGGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCT
GGTCAAGGACTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGG
CGTGCACACCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCG
TGCCCTCCAGCAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACAC
CAAGGTGGACAAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCA
GCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCAT
GATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGT
CAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGG
AG CAGTACAACAG CACGTACCGGGTG GTCAG CGTCCTCACCGTCCTG CACCAGGACTGG CTGA
ATGGCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCAT
CTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGA
GATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCC
GTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGA
CTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGG
DNA Heavy
GAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTC
SEQ ID NO: 200 Chain TCCCTGTCTCCGGGTAAA
48
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCCAGGTTCGTGACATGTCTCTGTTCGACGTGTTTGGCGGCGGCACGA
AGTTAACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAG
GAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGA
CAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCA
AACAAAGCAACAACAAGTACGCGGCCAGCAGCTATCTGAGCCTGACGCCTGAGCAGTGGAAGT
DNA Light
CCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCC
SEQ ID NO: 201 Chain CCTACAGAATGTTCA
MOR12515
SEQ ID NO: 202 (Kabat) HCDR1 SYDI H
SEQ ID NO: 203 (Kabat) H CD R2 RI DPYSG NT NYAQK F QG
SEQ ID NO: 204 (Kabat) H CD R3 GSFYTRDSYFDV
SEQ ID NO: 205 (Chothia) HCDR1 GYTFTSY
SEQ ID NO: 206 (Chothia) HCDR2 DPYSGN
SEQ ID NO: 207 (Chothia) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 208 (Kabat) LCDR1 TGTSSDVGTYNQVS
SEQ ID NO: 209 (Kabat) LCDR2 GVSKRPS
SEQ ID NO: 210 (Kabat) LCDR3 YSRDSPMDQV
SEQ ID NO: 211 (Chothia) LCDR1 TSSDVGTYN Q
SEQ ID NO: 212 (Chothia) LCDR2 GVS
SEQ ID NO: 213 (Chothia) LCDR3 RDSPMDQ
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPGQG LEW MG RI DPYSGNTNYAQK F
SEQ ID NO: 214 VH QG RVTMTR DTS I STAYM E LS R LRS E
DTAVYYCARGSFYTRDSYFDVWGQGTLVTVSS
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
SEQ ID NO: 215 VL KSGNTASLTISGLQAEDEADYYCYSRDSPM DQVFGGGTKLTVL
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
SEQ ID NO: 216 DNA VH TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCTACTCTCGTGACTCTCCGATGGACCAGGTGTTTGGCGGCGGCACGA
SEQ ID NO: 217 DNA VL AGTTAACCGTCCTA
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPGQG LEW MG RI DPYSGNTNYAQK F
QG RVTMTR DTS I STAYM E LS R LRS E DTAVYYCARGS FYTR DSYF DVWG QGTLVTVSSASTKG
PSV F P
LA PSS KSTSG GTAALG C LV K DYF P E PVTVSW NSGALTSGV HTF PAV LQSSG LYS LSSVVTV
PSSS LGT
QTYICNVN H KPSNTKVDKRVEP KSCD KT HTCP P CPAP E LLGG PSVF LFP PK PK DTLM IS RTP
EVTCVV
VDVSH E DP E VK F N WYVDGVEVH NAKTK P RE EQYNSTYRVVSVLTVLHQDW LNG K EYKCKVS N
KA L
PAP I E KTISKAKGQP RE PQVYTLP PSREE MTK NQVS LTCLVKG FY PSD !AVE WES NGQP E N
NYKTTPP
SEQ ID NO: 218 Heavy Chain VLDSDGS F F LYSK LTVD KS RWQQG NVFSCSVM H EA
LH N HYTQKSLSLSPGK
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
KSGNTASLTISGLQAEDEADYYCYSRDSPM DQVFGGGTKLTVLG QP KAAPSVT LF P PSSE E LOAN KA
T LVCLIS DFY PGAVTVAW KA DSS PVKAG VETTTPSKQSN N KYAASSYLSLTPE QW KS H
RSYSCQVTH
SEQ ID NO: 219 Light Chain EGSTVEKTVAPTECS
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCAGCCTCCACCAAGGGTCCAT
CGGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCT
GGTCAAGGACTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGG
CGTGCACACCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCG
TGCCCTCCAGCAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACAC
CAAGGTGGACAAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCA
GCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCAT
GATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGT
DNA Heavy
CAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGG
SEQ ID NO: 220 Chain AG CAGTACAACAG CACGTACCGGGTG GTCAG CGTCCTCACCGTCCTG
CACCAGGACTGG CTGA
49
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
ATGGCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCAT
CTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGA
GATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCC
GTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGA
CTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGG
GAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTC
TCCCTGTCTCCGGGTAAA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCTACTCTCGTGACTCTCCGATGGACCAGGTGTTTGGCGGCGGCACGA
AGTTAACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAG
GAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGA
CAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCA
AACAAAGCAACAACAAGTACGCGGCCAGCAGCTATCTGAGCCTGACGCCTGAGCAGTGGAAGT
DNA Light
CCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCC
SEQ ID NO: 221 Chain CCTACAGAATGTTCA
MOR12516
SEQ ID NO: 222 (Kabat) HCDR1 SYDI H
SEQ ID NO: 223 (Kabat) H CD R2 RI DPYSG NT NYAQK F QG
SEQ ID NO: 224 (Kabat) H CD R3 GSFYTRDSYFDV
SEQ ID NO: 225 (Chothia) HCDR1 GYTFTSY
SEQ ID NO: 226 (Chothia) HCDR2 DPYSGN
SEQ ID NO: 227 (Chothia) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 228 (Kabat) LCDR1 TGTSSDVGTYNQVS
SEQ ID NO: 229 (Kabat) LCDR2 GVSKRPS
SEQ ID NO: 230 (Kabat) LCDR3 QSRDTYRPVKV
SEQ ID NO: 231 (Chothia) LCDR1 TSSDVGTYN Q
SEQ ID NO: 232 (Chothia) LCDR2 GVS
SEQ ID NO: 233 (Chothia) LCDR3 RDTYRPVK
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPGQG LEW MG RI DPYSGNTNYAQKF
SEQ ID NO: 234 VH QG RVTMTR DTS I STAYM E LS R LRS E
DTAVYYCARGSFYTRDSYFDVWGQGTLVTVSS
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
SEQ ID NO: 235 VL KSGNTASLTISGLQAEDEADYYCQSRDTYRPVKVFGGGTKLTVL
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
SEQ ID NO: 236 DNA VH TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCCAGTCTCGTGACACTTACCGTCCGGTTAAAGTGTTTGGCGGCGGCA
SEQ ID NO: 237 DNA VL CGAAGTTAACCGTCCTA
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPGQG LEW MG RI DPYSGNTNYAQK F
QG RVTMTR DTS I STAYM E LS R LRS E DTAVYYCARGS FYTR DSYF DVWG QGTLVTVSSASTKG
PSV F P
LA PSS KSTSG GTAALG C LV K DYF P E PVTVSW NSGALTSGV HTF PAV LQSSG LYS LSSVVTV
PSSS LGT
QTYICNVN H KPSNTKVDKRVEP KSCD KT HTCP P CPAP E LLGG PSVF LFP PK PK DTLM IS RTP
EVTCVV
VDVSH E DP E VK F N WYVDGVEVH NAKTK P RE EQYNSTYRVVSVLTVLHQDW LNG K EYKCKVS N
KA L
PAP I E KTISKAKGQP RE PQVYTLP PSREE MTK NQVS LTCLVKG FY PSD !AVE WES NGQP E N
NYKTTPP
SEQ ID NO: 238 Heavy Chain VLDSDGS F F LYSK LTVD KS RWQQG NVFSCSVM H EA
LH N HYTQKSLSLSPGK
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
KSG NTASLTISG LQAE DE ADYYCQSRDTYRPVKVFGGGTK LTVLGQP KAAPSVTLFP PSSE ELQAN KA
T LVCLIS DFY PGAVTVAW KA DSS PVKAG VETTTPSKQSN N KYAASSYLSLTPE QW KS H
RSYSCQVTH
SEQ ID NO: 239 Light Chain EGSTVEKTVAPTECS
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCAGCCTCCACCAAGGGTCCAT
DNA Heavy
CGGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCT
SEQ ID NO: 240 Chain
GGTCAAGGACTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGG
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
CGTGCACACCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCG
TGCCCTCCAGCAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACAC
CAAGGTGGACAAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCA
GCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCAT
GATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGT
CAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGG
AG CAGTACAACAG CACGTACCGGGTG GTCAG CGTCCTCACCGTCCTG CACCAGGACTGG CTGA
ATGGCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCAT
CTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGA
GATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCC
GTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGA
CTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGG
GAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTC
TCCCTGTCTCCGGGTAAA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCCAGTCTCGTGACACTTACCGTCCGGTTAAAGTGTTTGGCGGCGGCA
CGAAGTTAACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCT
GAGGAG CTTCAAG CCAACAAGG CCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAG CC
GTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACC
CTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTATCTGAGCCTGACGCCTGAGCAGTG
DNA Light
GAAGTCCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAG
SEQ ID NO: 241 Chain TGGCCCCTACAGAATGTTCA
MOR12615
SEQ ID NO: 242 (Kabat) HCDR1 SYDI H
SEQ ID NO: 243 (Kabat) H CD R2 RI DPYSG NT NYAQK F QG
SEQ ID NO: 244 (Kabat) H CD R3 GSFYTRDSYFDV
SEQ ID NO: 245 (Chothia) HCDR1 GYTFTSY
SEQ ID NO: 246 (Chothia) HCDR2 DPYSGN
SEQ ID NO: 247 (Chothia) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 248 (Kabat) LCDR1 TGTSSDVGTYNQVS
SEQ ID NO: 249 (Kabat) LCDR2 GVSKRPS
SEQ ID NO: 250 (Kabat) LCDR3 SSRDLIGHYV
SEQ ID NO: 251 (Chothia) LCDR1 TSSDVGTYN Q
SEQ ID NO: 252 (Chothia) LCDR2 GVS
SEQ ID NO: 253 (Chothia) LCDR3 RDLIGHY
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPGQG LEW MG RI DPYSGNTNYAQKF
SEQ ID NO: 254 VH QG RVTMTR DTS I STAYM E LS R LRS E
DTAVYYCARGSFYTRDSYFDVWGQGTLVTVSS
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
SEQ ID NO: 255 VL KSGNTASLTISGLQAEDEADYYCSSRDLIGHYVFGGGTKLTVL
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
SEQ ID NO: 256 DNA VH TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCTCTTCTCGTGACCTGATCGGTCATTACGTGTTTGGCGGCGGCACGA
SEQ ID NO: 257 DNA VL AGTTAACCGTCCTA
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPGQG LEW MG RI DPYSGNTNYAQK F
QG RVTMTR DTS I STAYM E LS R LRS E DTAVYYCARGS FYTR DSYF DVWG QGTLVTVSSASTKG
PSV F P
LA PSS KSTSG GTAALG C LV K DYF P E PVTVSW NSGALTSGV HTF PAV LQSSG LYS LSSVVTV
PSSS LGT
QTYICNVN H KPSNTKVDKRVEP KSCD KT HTCP P CPAP E LLGG PSVF LFP PK PK DTLM IS RTP
EVTCVV
VDVSH E DP E VK F N WYVDGVEVH NAKTK P RE EQYNSTYRVVSVLTVLHQDW LNG K EYKCKVS N
KA L
PAP I E KTISKAKGQP RE PQVYTLP PSREE MTK NQVS LTCLVKG FY PSD !AVE WES NGQP E N
NYKTTPP
SEQ ID NO: 258 Heavy Chain VLDSDGS F F LYSK LTVD KS RWQQG NVFSCSVM H EA
LH N HYTQKSLSLSPGK
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
KSGNTASLTISGLQAEDEADYYCSSRDLIGHYVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATL
VCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSN N KYAASSYLSLTPE QWKSH RSYSCQVTH EG
SEQ ID NO: 259 Light Chain STVEKTVAPTECS
51
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCAGCCTCCACCAAGGGTCCAT
CGGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCT
GGTCAAGGACTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGG
CGTGCACACCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCG
TGCCCTCCAGCAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAG CCCAGCAACAC
CAAGGTGGACAAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCA
GCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCAT
GATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGT
CAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAG CCGCGGGAGG
AG CAGTACAACAG CACGTACCGGGTGGTCAGCGTCCTCACCGTCCTGCACCAGGACTGGCTGA
ATGGCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCAT
CTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGA
GATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCC
GTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGA
CTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGG
DNA Heavy
GAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTC
SEQ ID NO: 260 Chain TCCCTGTCTCCGGGTAAA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGG CACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCTCTTCTCGTGACCTGATCGGTCATTACGTGTTTGGCGGCGGCACGA
AGTTAACCGTCCTAGGTCAGCCCAAGG CTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAG
GAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGA
CAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCA
AACAAAGCAACAACAAGTACGCGGCCAGCAGCTATCTGAGCCTGACGCCTGAGCAGTGGAAGT
DNA Light
CCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCC
SEQ ID NO: 261 Chain CCTACAGAATGTTCA
MOR12920
SEQ ID NO: 262 (Kabat) HCDR1 GYYMH
SEQ ID NO: 263 (Kabat) H C D R2 DIEPYHGKPLYAQKFQG
SEQ ID NO: 264 (Kabat) H CD R3 GSFYTRDSYFDV
SEQ ID NO: 265 (Chothia) HCDR1 GYTFTGY
SEQ ID NO: 266 (Chothia) HCDR2 EPYHGK
SEQ ID NO: 267 (Chothia) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 268 (Kabat) LCD R1 TGTSSDVGTYNQVS
SEQ ID NO: 269 (Kabat) LCDR2 GVSKRPS
SEQ ID NO: 270 (Kabat) LCDR3 SSRDLIGHYV
SEQ ID NO: 271 (Chothia) LCDR1 TSSDVGTYN Q
SEQ ID NO: 272 (Chothia) LCDR2 GVS
SEQ ID NO: 273 (Chothia) LCDR3 RDLIGHY
QVQLVQSGAEVKK PGASVKVSCKASGYTFTGYYM HWVRQA PG QG LE WMG DI EPYHGK PLYAQK
SEQ ID NO: 274 VH F QG RVTMTRDTSISTAYM E LS RLRSE DTAVYYCARGSFYTRDSYF
DVWG QGTLVTVSS
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG NAP KLMIYGVSKRPSGVSNRFSGS
SEQ ID NO: 275 VL KSGNTASLTISGLQAEDEADYYCSSRDLIGHYVFGGGTKLTVL
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGCGAAAGCCTGAAAATTAG
CTGCAAAGGCTCCGGATATAGCTTCACTAACTCTTGGGTTGCTTGGGTGCGCCAGATGCCGGGC
AAAGGTCTCGAGTGGATGGGCATCATCTACCCGGGTAACAGCGACACCATCTATAGCCCGAGCT
TTCAGGGCCAGGTGACCATTAGCGCGGATAAAAGCATCAGCACCGCGTATCTGCAATGGAGCA
GCCTGAAAGCGAGCGATACCGCGATGTATTATTGCGCGCGTGTTCATATCATCCAGCCGCCGTC
SEQ ID NO: 276 DNA VH
TGCTTGGTCTTACAACGCTATGGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCA
GATATCCAGATGACCCAGAGCCCGAGCAGCCTGAGCGCCAGCGTGGGCGATCGCGTGACCATT
ACCTGCAGAGCCAGCCAGTCTATTTCTACTTACCTGAACTGGTACCAGCAGAAACCGGGCAAAG
CGCCGAAACTATTAATCTTCGGTGCTTCTAACCTGCAAAGCGGCGTGCCGAGCCGCTTTAGCGG
CAGCGGATCCGGCACCGATTTCACCCTGACCATTAGCTCTCTGCAACCGGAAGACTTTGCGACCT
SEQ ID NO: 277 DNA VL
ATTATTGCCAGCAGTCTATCACTGAACTGTTCACCTTTGGCCAGGGCACGAAAGTTGAAATTAAA
QVQLVQSGAEVKK PGASVKVSCKASGYTFTGYYM HWVRQA PG QG LE WMG DI EPYHGK PLYAQK
FQGRVTMTRDTSISTAYM ELSRLRSEDTAVYYCARGSFYTRDSYFDVWGQGTLVTVSSASTKGPSVF
P LAPSSKSTSGGTAALGCLVK DYF P E PVTVSW N SGALTSGV HTF PAV LQSSG LYS LSSVVTV
PSSS LGT
QTYICNVN H K PS NTKVDK RVE P KSCD KT HTCP P CPAP E LLGG PSVF LF P PK PK DTLM
IS RTP EVTCVV
SEQ ID NO: 278 Heavy Chain VDVSH E DP E VK F N WYVDGVEVH NA KTK P RE E
QYNSTYRVVSVLTVLHQDW LNG K EYKCKVS N KA L
52
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
PAP I E KTISKAKG QP RE PQVYTLP PSREE MTK NQVS LTCLVKG FY PSD !AVE WES NG QP E
N NYKTTPP
VLDSDGS F F LYSK LTVD KS RWQQG NVFSCSVM H EA LH N HYTQKSLSLSPGK
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG NAP KLMIYGVSKRPSGVSNRFSGS
KSGNTASLTISGLQAEDEADYYCSSRDLIGHYVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATL
VCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSN N KYAASSYLSLTPE QWKSH RSYSCQVTH EG
SEQ ID NO: 279 Light Chain STVEKTVAPTECS
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGCGAAAGCCTGAAAATTAG
CTGCAAAGGCTCCGGATATAGCTTCACTAACTCTTGGGTTGCTTGGGTGCGCCAGATGCCGGGC
AAAGGTCTCGAGTGGATGGGCATCATCTACCCGGGTAACAGCGACACCATCTATAGCCCGAGCT
TTCAGGGCCAGGTGACCATTAGCGCGGATAAAAGCATCAGCACCGCGTATCTGCAATGGAGCA
GCCTGAAAGCGAGCGATACCGCGATGTATTATTGCGCGCGTGTTCATATCATCCAGCCGCCGTC
TGCTTGGTCTTACAACGCTATGGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCAGCC
TCCACCAAGGGTCCATCGGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAG
CGGCCCTGGGCTG CCTGGTCAAGGACTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAG
GCGCCCTGACCAGCGGCGTGCACACCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTC
AGCAGCGTGGTGACCGTGCCCTCCAGCAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATC
ACAAGCCCAGCAACACCAAGGTGGACAAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACA
CATGCCCACCGTGCCCAGCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAA
CCCAAGGACACCCTCATGATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCC
ACGAAGACCCTGAGGTCAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGA
CAAAGCCGCGGGAGGAGCAGTACAACAGCACGTACCGGGTGGTCAGCGTCCTCACCGTCCTGC
ACCAGGACTGGCTGAATGGCAAGGAGTACAAGTGCAAGGTCTCCAACAAAG CCCTCCCAGCCC
CCATCGAGAAAACCATCTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGC
CCCCATCCCGGGAGGAGATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCT
ATCCCAGCGACATCGCCGTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACC
ACGCCTCCCGTGCTGGACTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGA
DNA Heavy GCAGGTGGCAGCAGGGGAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTG
CACAACCACTA
SEQ ID NO: 280 Chain CACGCAGAAGAGCCTCTCCCTGTCTCCGGGTAAA
GATATCCAGATGACCCAGAGCCCGAGCAGCCTGAGCGCCAGCGTGGGCGATCGCGTGACCATT
ACCTGCAGAGCCAGCCAGTCTATTTCTACTTACCTGAACTGGTACCAGCAGAAACCGGGCAAAG
CGCCGAAACTATTAATCTTCGGTGCTTCTAACCTGCAAAGCGGCGTGCCGAGCCGCTTTAGCGG
CAGCGGATCCGGCACCGATTTCACCCTGACCATTAGCTCTCTGCAACCGGAAGACTTTGCGACCT
ATTATTGCCAGCAGTCTATCACTGAACTGTTCACCTTTGGCCAGGGCACGAAAGTTGAAATTAAA
CGTACGGTGGCCGCTCCCAGCGTGTTCATCTTCCCCCCCAGCGACGAGCAGCTGAAGAGCGGCA
CCGCCAGCGTGGTGTGCCTGCTGAACAACTTCTACCCCCGGGAGGCCAAGGTGCAGTGGAAGG
TGGACAACGCCCTGCAGAGCGGCAACAGCCAGGAAAGCGTCACCGAGCAGGACAGCAAGGAC
TCCACCTACAGCCTGAGCAGCACCCTGACCCTGAGCAAGGCCGACTACGAGAAGCACAAGGTG
DNA Light
TACGCCTGCGAGGTGACCCACCAGGGCCTGTCCAGCCCCGTGACCAAGAGCTTCAACCGGGGC
SEQ ID NO: 281 Chain GAGTGT
MOR12921
SEQ ID NO: 282 (Kabat) HCDR1 GYYMH
SEQ ID NO: 283 (Kabat) HCDR2 DIDPHSGNAVYAQKFQG
SEQ ID NO: 284 (Kabat) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 285 (Chothia) HCDR1 GYTFTGY
SEQ ID NO: 286 (Chothia) HCDR2 DPHSGN
SEQ ID NO: 287 (Chothia) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 288 (Kabat) LCDR1 TGTSSDVGTYNQVS
SEQ ID NO: 289 (Kabat) LCDR2 GVSKRPS
SEQ ID NO: 290 (Kabat) LCDR3 SSRDLIGHYV
SEQ ID NO: 291 (Chothia) LCDR1 TSSDVGTYN Q
SEQ ID NO: 292 (Chothia) LCDR2 GVS
SEQ ID NO: 293 (Chothia) LCDR3 RDLIGHY
QVQLVQSGAEVKK PGASVKVSCKASGYTFTGYYM HWVRQA PG QG LE WMG DI DP HSG NAVYAQ
SEQ ID NO: 294 VH K FQG RVT MTR DTS I STAYM E LS R LRS E
DTAVYYCARGSFYTRDSYFDVWGQGTLVTVSS
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
SEQ ID NO: 295 VL KSGNTASLTISGLQAEDEADYYCSSRDLIGHYVFGGGTKLTVL
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACCGGCTATTACATG CATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCGACATCGACCCGCATTCTGGCAACGCTGTTTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
SEQ ID NO: 296 DNA VH TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGG CACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
SEQ ID NO: 297 DNA VL
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
53
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
GAAGCGGATTATTACTGCTCTTCTCGTGACCTGATCGGTCATTACGTGTTTGGCGGCGGCACGA
AGTTAACCGTCCTA
QVQLVQSGAEVKK PGASVKVSCKASGYTFTGYYM HWVRQA PGQG LE WMG DI DP HSG NAVYAQ
K FQG RVT MTR DTS I STAYM E LS R LRS E
DTAVYYCARGSFYTRDSYFDVWGQGTLVTVSSASTKGPSV
FPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLOSSGLYSLSSVVTVPSSSLG
TQTYICNVNHKPSNTKVDKRVEPKSCDKTHTCPPCPAPELLGGPSVFLEPPKPKDTLMISRTPEVICV
VVDVSH E DP E VK F NWYVDGVEVH NAKT K P RE E QYNSTYRVVSVLTVLH QDW LNG K
EYKCKVSNK
A LPAP I E KT ISKAKGQP RE P QVYTLP PSRE E MTK NQVSLTCLVKG FYPSDIAVEW ES NGQP
ENNYKTT
SEQ ID NO: 298 Heavy Chain P PVLDSDGSFF LYSK LTVDKSRWQQGNVFSCSVMH EALH N
H YTQKSLSLS PG K
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
KSGNTASLTISGLQAEDEADYYCSSRDLIGHYVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATL
VCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSN N KYAASSYLSLTPE QWKSH RSYSCQVTH EG
SEQ ID NO: 299 Light Chain STVEKTVAPTECS
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACCGGCTATTACATGCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCGACATCGACCCGCATTCTGGCAACGCTGTTTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCAGCCTCCACCAAGGGTCCAT
CGGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCT
GGTCAAGGACTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGG
CGTGCACACCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCG
TGCCCTCCAGCAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACAC
CAAGGTGGACAAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCA
GCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCAT
GATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGT
CAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGG
AG CAGTACAACAG CACGTACCGGGTG GTCAG CGTCCTCACCGTCCTG CACCAGGACTGG CTGA
ATGGCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCAT
CTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGA
GATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCC
GTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGA
CTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGG
DNA Heavy
GAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTC
SEQ ID NO: 300 Chain TCCCTGTCTCCGGGTAAA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCTCTTCTCGTGACCTGATCGGTCATTACGTGTTTGGCGGCGGCACGA
AGTTAACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAG
GAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGA
CAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCA
AACAAAGCAACAACAAGTACGCGGCCAGCAGCTATCTGAGCCTGACGCCTGAGCAGTGGAAGT
DNA Light
CCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCC
SEQ ID NO: 301 Chain CCTACAGAATGTTCA
MOR12922
SEQ ID NO: 302 (Kabat) HCDR1 GYYMH
SEQ ID NO: 303 (Kabat) H CD R2 VIDPYSGVVTEYAQKFQG
SEQ ID NO: 304 (Kabat) H CD R3 GSFYTRDSYFDV
SEQ ID NO: 305 (Chothia) HCDR1 GYTFTGY
SEQ ID NO: 306 (Chothia) HCDR2 DPYSGW
SEQ ID NO: 307 (Chothia) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 308 (Kabat) LCDR1 TGTSSDVGTYNQVS
SEQ ID NO: 309 (Kabat) LCDR2 GVSKRPS
SEQ ID NO: 310 (Kabat) LCDR3 SSRDLIGHYV
SEQ ID NO: 311 (Chothia) LCDR1 TSSDVGTYN Q
SEQ ID NO: 312 (Chothia) LCDR2 GVS
SEQ ID NO: 313 (Chothia) LCDR3 RDLIGHY
QVQLVQSGAEVKK PGASVKVSCKASGYTFTGYYM HWVRQA PGQG LE WMGVI DPYSGWTEYAQK
SEQ ID NO: 314 VH
FQGRVTMTRDTSISTAYMELSRLRSEDTAVYYCARGSFYTRDSYFDVWGQGTLVTVSS
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
SEQ ID NO: 315 VL KSGNTASLTISGLQAEDEADYYCSSRDLIGHYVFGGGTKLTVL
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACCGGCTATTACATGCATTGGGTGCGCCAGGCCCCGGGC
SEQ ID NO: 316 DNA VH
CAGGGCCTCGAGTGGATGGGCGTTATTGACCCGTACTCTGGCTGGACTGAATACGCGCAGAAA
54
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCTCTTCTCGTGACCTGATCGGTCATTACGTGTTTGGCGGCGGCACGA
SEQ ID NO: 317 DNA VL AGTTAACCGTCCTA
QVQLVQSGAEVKK PGASVKVSCKASGYTFTGYYM HWVRQA PGQG LE WMGVI DPYSGWTEYAQK
FQGRVTMTRDTSISTAYM ELSRLRSEDTAVYYCARGSFYTRDSYFDVWGQGTLVTVSSASTKGPSVF
P LAPSSKSTSGGTAALGCLVK DYF P E PVTVSW N SGALTSGV HTF PAV LQSSG LYS LSSVVTV
PSSS LGT
QTYICNVN H K PS NTKVDKRVE P KSCD KT HTCP P CPAP E LLGG PSVF LF P PK PK DTLM IS
RTP EVTCVV
VDVSH E DP E VK F N WYVDGVEVH NAKTK P RE E QYNSTYRVVSVLTVLHQDW LNG K EYKCKVS N
KA L
PAP I E KTISKAKGQP RE PQVYTLP PSREE MTK NQVS LTCLVKG FY PSD !AVE WES NGQP E N
NYKTTPP
SEQ ID NO: 318 Heavy Chain VLDSDGS F F LYSK LTVD KS RWQQG NVFSCSVM H EA
LH N HYTQKSLSLSPGK
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
KSGNTASLTISGLQAEDEADYYCSSRDLIGHYVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATL
VCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSN N KYAASSYLSLTPE QWKSH RSYSCQVTH EG
SEQ ID NO: 319 Light Chain STVEKTVAPTECS
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACCGGCTATTACATGCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCGTTATTGACCCGTACTCTGGCTGGACTGAATACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCAGCCTCCACCAAGGGTCCAT
CGGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCT
GGTCAAGGACTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGG
CGTGCACACCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCG
TGCCCTCCAGCAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACAC
CAAGGTGGACAAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCA
GCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCAT
GATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGT
CAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGG
AG CAGTACAACAG CACGTACCGGGTG GTCAG CGTCCTCACCGTCCTG CACCAGGACTGG CTGA
ATGGCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCAT
CTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGA
GATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCC
GTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGA
CTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGG
DNA Heavy
GAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTC
SEQ ID NO: 320 Chain TCCCTGTCTCCGGGTAAA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCTCTTCTCGTGACCTGATCGGTCATTACGTGTTTGGCGGCGGCACGA
AGTTAACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAG
GAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGA
CAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCA
AACAAAGCAACAACAAGTACGCGGCCAGCAGCTATCTGAGCCTGACGCCTGAGCAGTGGAAGT
DNA Light
CCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCC
SEQ ID NO: 321 Chain CCTACAGAATGTTCA
MOR13654
SEQ ID NO: 322 (Kabat) HCDR1 SYDI H
SEQ ID NO: 323 (Kabat) H CD R2 RI DPYSG NT NYAQK F QG
SEQ ID NO: 324 (Kabat) H CD R3 GSFYTRDSYFDV
SEQ ID NO: 325 (Chothia) HCDR1 GYTFTSY
SEQ ID NO: 326 (Chothia) HCDR2 DPYSGN
SEQ ID NO: 327 (Chothia) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 328 (Kabat) LCD R1 TGTSSDVGTYNQVS
SEQ ID NO: 329 (Kabat) LCDR2 GVSKRPS
SEQ ID NO: 330 (Kabat) LCD R3 QSRGEYRPGWV
SEQ ID NO: 331 (Chothia) LCDR1 TSSDVGTYN Q
SEQ ID NO: 332 (Chothia) LCDR2 GVS
SEQ ID NO: 333 (Chothia) LCDR3 RGEYRPGW
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDIHWVRQAPGQGLEWMGRIDPYSGNTNYAQKF
SEQ ID NO: 334 VH
QGRVTMTRDTSISTAYMELSRLRSEDTAVYYCARGSFYTRDSYFDVWGQGTLVTVSS
DIALTQPASVSGSPGQSITISCTGTSSDVGTYNQVSWYQQHPGKAPKLMIYGVSKRPSGVSNRFSGS
SEQ ID NO: 335 VL KSGNTASLTISGLQAEDEADYYCQSRGEYRPGWVFGGGTKLTVL
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
SEQ ID NO: 336 DNA VH TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCCAGTCTCGTGGTGAATACCGTCCGGGTTGGGTGTTTGGCGGCGGC
SEQ ID NO: 337 DNA VL ACGAAGTTAACCGTCCTA
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDIHWVRQAPGQGLEWMGRIDPYSGNTNYAQKF
QGRVTMTRDTSISTAYMELSRLRSEDTAVYYCARGSFYTRDSYFDVWGQGTLVTVSSASTKGPSVFP
LAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT
QTYICNVN H KPSNTKVDKRVEP KSCDKTHTCPPCPAPELLGGPSVF LFPPK PKDTLM IS RTPEVTCVV
VDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKAL
PAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPP
SEQ ID NO: 338 Heavy Chain
VLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK
DIALTQPASVSGSPGQSITISCTGTSSDVGTYNQVSWYQQHPGKAPKLMIYGVSKRPSGVSNRFSGS
KSGNTASLTISGLQAEDEADYYCQSRGEYRPGWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANK
ATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVT
SEQ ID NO: 339 Light Chain HEGSTVEKTVAPTECS
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCAGCCTCCACCAAGGGTCCAT
CGGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCT
GGTCAAGGACTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGG
CGTGCACACCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCG
TGCCCTCCAGCAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACAC
CAAGGTGGACAAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCA
GCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCAT
GATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGT
CAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGG
AGCAGTACAACAGCACGTACCGGGTGGTCAGCGTCCTCACCGTCCTGCACCAGGACTGGCTGA
ATGGCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCAT
CTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGA
GATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCC
GTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGA
CTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGG
DNA Heavy
GAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTC
SEQ ID NO: 340 Chain TCCCTGTCTCCGGGTAAA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCCAGTCTCGTGGTGAATACCGTCCGGGTTGGGTGTTTGGCGGCGGC
ACGAAGTTAACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTC
TGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCC
GTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACC
CTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTATCTGAGCCTGACGCCTGAGCAGTG
DNA Light
GAAGTCCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAG
SEQ ID NO: 341 Chain TGGCCCCTACAGAATGTTCA
MOR13655
SEQ ID NO: 342 (Kabat) HCDR1 SYDI H
SEQ ID NO: 343 (Kabat) HCDR2 RIDPYSGNTNYAQKFQG
SEQ ID NO: 344 (Kabat) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 345 (Chothia) HCDR1 GYTFTSY
SEQ ID NO: 346 (Chothia) HCDR2 DPYSGN
SEQ ID NO: 347 (Chothia) HCDR3 GSFYTRDSYFDV
56
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
SEQ ID NO: 348 (Kabat) LCDR1 TGTSSDVGTYNQVS
SEQ ID NO: 349 (Kabat) LCDR2 GVSKRPS
SEQ ID NO: 350 (Kabat) LCDR3 SSATQKPDVTV
SEQ ID NO: 351 (Chothia) LCDR1 TSSDVGTYNQ
SEQ ID NO: 352 (Chothia) LCDR2 GVS
SEQ ID NO: 353 (Chothia) LCDR3 ATQKPDVT
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDIHWVRQAPGQGLEWMGRIDPYSGNTNYAQKF
SEQ ID NO: 354 VH
QGRVTMTRDTSISTAYMELSRLRSEDTAVYYCARGSFYTRDSYFDVWGQGTLVTVSS
DIALTQPASVSGSPGQSITISCTGTSSDVGTYNQVSWYQQHPGKAPKLMIYGVSKRPSGVSNRFSGS
SEQ ID NO: 355 VL KSGNTASLTISGLQAEDEADYYCSSATQKPDVTVFGGGTKLTVL
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
SEQ ID NO: 356 DNA VH TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCTCTTCTGCTACTCAGAAACCGGACGTTACTGTGTTTGGCGGCGGCA
SEQ ID NO: 357 DNA VL CGAAGTTAACCGTCCTA
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDIHWVRQAPGQGLEWMGRIDPYSGNTNYAQKF
QGRVTMTRDTSISTAYMELSRLRSEDTAVYYCARGSFYTRDSYFDVWGQGTLVTVSSASTKGPSVFP
LAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT
QTYICNVN H KPSNTKVDKRVEP KSCDKTHTCPPCPAPELLGGPSVF LFPPK PKDTLM IS RTPEVTCVV
VDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKAL
PAPIEKTISKAKGQPREPQVYTLPPSREE MTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPP
SEQ ID NO: 358 Heavy Chain
VLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK
DIALTQPASVSGSPGQSITISCTGTSSDVGTYNQVSWYQQHPGKAPKLMIYGVSKRPSGVSNRFSGS
KSGNTASLTISGLQAEDEADYYCSSATQKPDVTVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKA
TLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTH
SEQ ID NO: 359 Light Chain EGSTVEKTVAPTECS
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCAGCCTCCACCAAGGGTCCAT
CGGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCT
GGTCAAGGACTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGG
CGTGCACACCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCG
TGCCCTCCAGCAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACAC
CAAGGTGGACAAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCA
GCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCAT
GATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGT
CAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGG
AGCAGTACAACAGCACGTACCGGGTGGTCAGCGTCCTCACCGTCCTGCACCAGGACTGGCTGA
ATGGCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCAT
CTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGA
GATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCC
GTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGA
CTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGG
DNA Heavy
GAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTC
SEQ ID NO: 360 Chain TCCCTGTCTCCGGGTAAA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCTCTTCTGCTACTCAGAAACCGGACGTTACTGTGTTTGGCGGCGGCA
CGAAGTTAACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCT
GAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCC
GTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACC
CTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTATCTGAGCCTGACGCCTGAGCAGTG
DNA Light
GAAGTCCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAG
SEQ ID NO: 361 Chain TGGCCCCTACAGAATGTTCA
MOR13656
SEQ ID NO: 362 (Kabat) HCDR1 SYDI H
57
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
SEQ ID NO: 363 (Kabat) HCDR2 RI DPYSG NT NYAQK F QG
SEQ ID NO: 364 (Kabat) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 365 (Chothia) HCDR1 GYTFTSY
SEQ ID NO: 366 (Chothia) HCDR2 DPYSGN
SEQ ID NO: 367 (Chothia) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 368 (Kabat) LCDR1 TGTSSDVGTYNQVS
SEQ ID NO: 368 (Kabat) LCDR2 GVSKRPS
SEQ ID NO: 370 (Kabat) LCDR3 AVRDSVWHV
SEQ ID NO: 371 (Chothia) LCDR1 TSSDVGTYN Q
SEQ ID NO: 372 (Chothia) LCDR2 GVS
SEQ ID NO: 373 (Chothia) LCDR3 RDSVWH
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPGQG LEW MG RI DPYSGNTNYAQKF
SEQ ID NO: 374 VH QG RVTMTR DTS I STAYM E LS R LRS E
DTAVYYCARGSFYTRDSYFDVWGQGTLVTVSS
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
SEQ ID NO: 375 VL KSGNTASLTISGLQAEDEADYYCAVRDSVWHVFGGGTKLTVL
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
SEQ ID NO: 376 DNA VH TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCGCTGTTCGTGACTCCGTTTGGCATGTGTTTGGCGGCGGCACGAAGT
SEQ ID NO: 377 DNA VL TAACCGTCCTA
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPGQG LEW MG RI DPYSGNTNYAQK F
QG RVTMTR DTS I STAYM E LS R LRS E DTAVYYCARGS FYTR DSYF DVWG QGTLVTVSSASTKG
PSV F P
LA PSS KSTSG GTAALG C LV K DYF P E PVTVSW NSGALTSGV HTF PAV LQSSG LYS LSSVVTV
PSSS LGT
QTYICNVN H K PS NTKVDKRVE P KSCD KT HTCP P CPAP E LLGG PSVF LFP PK PK DTLM IS
RTP EVTCVV
VDVSH E DP E VK F N WYVDGVEVH NAKTK P RE EQYNSTYRVVSVLTVLHQDW LNG K EYKCKVS N
KA L
PAP I E KTISKAKGQP RE PQVYTLP PSREE MTK NQVS LTCLVKG FY PSD !AVE WES NGQP E N
NYKTTPP
SEQ ID NO: 378 Heavy Chain VLDSDGS F F LYSK LTVD KS RWQQG NVFSCSVM H EA
LH N HYTQKSLSLSPGK
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
KSGNTASLTISGLQAEDEADYYCAVRDSVWHVFGGGTKLTVLGQPKAAPSVTLFP PSSE ELQAN KAT
LVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSN N KYAASSY LS LTP E QWKSH RSYSCQVTH E
SEQ ID NO: 379 Light Chain GSTVEKTVAPTECS
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCAGCCTCCACCAAGGGTCCAT
CGGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCT
GGTCAAGGACTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGG
CGTGCACACCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCG
TGCCCTCCAGCAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACAC
CAAGGTGGACAAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCA
GCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCAT
GATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGT
CAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGG
AG CAGTACAACAG CACGTACCGGGTG GTCAG CGTCCTCACCGTCCTG CACCAGGACTGG CTGA
ATGGCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCAT
CTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGA
GATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCC
GTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGA
CTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGG
DNA Heavy
GAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTC
SEQ ID NO: 380 Chain TCCCTGTCTCCGGGTAAA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCGCTGTTCGTGACTCCGTTTGGCATGTGTTTGGCGGCGGCACGAAGT
DNA Light
TAACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAG
SEQ ID NO: 381 Chain
CTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAG
58
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
TGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAAC
AAAGCAACAACAAGTACGCGGCCAGCAGCTATCTGAGCCTGACGCCTGAGCAGTGGAAGTCCC
ACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCCCCT
ACAGAATGTTCA
MOR13657
SEQ ID NO: 382 (Kabat) HCDR1 SYDI H
SEQ ID NO: 383 (Kabat) H CD R2 RI DPYSG NT NYAQK F QG
SEQ ID NO: 384 (Kabat) H CD R3 GSFYTRDSYFDV
SEQ ID NO: 385 (Chothia) HCDR1 GYTFTSY
SEQ ID NO: 386 (Chothia) HCDR2 DPYSGN
SEQ ID NO: 387 (Chothia) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 388 (Kabat) LCDR1 TGTSSDVGTYNQVS
SEQ ID NO: 389 (Kabat) LCDR2 GVSKRPS
SEQ ID NO: 390 (Kabat) LCDR3 SARDGWSEYV
SEQ ID NO: 391 (Chothia) LCDR1 TSSDVGTYN Q
SEQ ID NO: 392 (Chothia) LCDR2 GVS
SEQ ID NO: 393 (Chothia) LCDR3 RDGWSEY
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPGQG LEW MG RI DPYSGNTNYAQKF
SEQ ID NO: 394 VH QG RVTMTR DTS I STAYM E LS R LRS E
DTAVYYCARGSFYTRDSYFDVWGQGTLVTVSS
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
SEQ ID NO: 395 VL KSGNTASLTISGLQAEDEADYYCSARDGWSEYVFGGGTKLTVL
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
SEQ ID NO: 396 DNA VH TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCTCTGCTCGTGACGGTTGGTCTGAATACGTGTTTGGCGGCGGCACGA
SEQ ID NO: 397 DNA VL AGTTAACCGTCCTA
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPGQG LEW MG RI DPYSGNTNYAQK F
QG RVTMTR DTS I STAYM E LS R LRS E DTAVYYCARGS FYTR DSYF DVWG QGTLVTVSSASTKG
PSV F P
LA PSS KSTSG GTAALG C LV K DYF P E PVTVSW NSGALTSGV HTF PAV LQSSG LYS LSSVVTV
PSSS LGT
QTYICNVN H KPSNTKVDKRVEP KSCD KT HTCP P CPAP E LLGG PSVF LFP PK PKDTLM IS RTP
EVTCVV
VDVSH E DP E VK F N WYVDGVEVH NAKTK P RE EQYNSTYRVVSVLTVLHQDW LNG K EYKCKVS N
KA L
PAP I E KTISKAKGQP RE PQVYTLP PSREE MTK NQVS LTCLVKG FY PSD !AVE WES NGQP E N
NYKTTPP
SEQ ID NO: 398 Heavy Chain VLDSDGS F F LYSK LTVD KS RWQQG NVFSCSVM H EA
LH N HYTQKSLSLSPGK
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
KSGNTASLTISGLQAEDEADYYCSARDGWSEYVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKA
T LVCLIS DFY PGAVTVAW KA DSS PVKAG VETTTPSKQSN N KYAASSYLSLTPE QW KS H
RSYSCQVTH
SEQ ID NO: 399 Light Chain EGSTVEKTVAPTECS
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCAGCCTCCACCAAGGGTCCAT
CGGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCT
GGTCAAGGACTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGG
CGTGCACACCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCG
TGCCCTCCAGCAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACAC
CAAGGTGGACAAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCA
GCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCAT
GATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGT
CAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGG
AG CAGTACAACAG CACGTACCGGGTG GTCAG CGTCCTCACCGTCCTG CACCAGGACTGG CTGA
ATGGCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCAT
CTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGA
GATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCC
GTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGA
CTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGG
DNA Heavy
GAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTC
SEQ ID NO: 400 Chain TCCCTGTCTCCGGGTAAA
59
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCTCTGCTCGTGACGGTTGGTCTGAATACGTGTTTGGCGGCGGCACGA
AGTTAACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAG
GAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGA
CAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCA
AACAAAGCAACAACAAGTACGCGGCCAGCAGCTATCTGAGCCTGACGCCTGAGCAGTGGAAGT
DNA Light
CCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCC
SEQ ID NO: 401 Chain CCTACAGAATGTTCA
MOR13658
SEQ ID NO: 402 (Kabat) HCDR1 SYDI H
SEQ ID NO: 403 (Kabat) H CD R2 RI DPYSG NT NYAQK F QG
SEQ ID NO: 404 (Kabat) H CD R3 GSFYTRDSYFDV
SEQ ID NO: 405 (Chothia) HCDR1 GYTFTSY
SEQ ID NO: 406 (Chothia) HCDR2 DPYSGN
SEQ ID NO: 407 (Chothia) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 408 (Kabat) LCDR1 TGTSSDVGTYNQVS
SEQ ID NO: 409 (Kabat) LCDR2 GVSKRPS
SEQ ID NO: 410 (Kabat) LCDR3 ASADHSYHTV
SEQ ID NO: 411 (Chothia) LCDR1 TSSDVGTYN Q
SEQ ID NO: 412 (Chothia) LCDR2 GVS
SEQ ID NO: 413 (Chothia) LCDR3 ADHSYHT
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPGQG LEW MG RI DPYSGNTNYAQK F
SEQ ID NO: 414 VH QG RVTMTR DTS I STAYM E LS R LRS E
DTAVYYCARGSFYTRDSYFDVWGQGTLVTVSS
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
SEQ ID NO: 415 VL KSGNTASLTISGLQAEDEADYYCASADHSYHTVFGGGTKLTVL
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
SEQ ID NO: 416 DNA VH TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCGCTTCTGCTGACCATTCTTACCATACTGTGTTTGGCGGCGGCACGAA
SEQ ID NO: 417 DNA VL GTTAACCGTCCTA
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPGQG LEW MG RI DPYSGNTNYAQK F
QG RVTMTR DTS I STAYM E LS R LRS E DTAVYYCARGS FYTR DSYF DVWG QGTLVTVSSASTKG
PSV F P
LA PSS KSTSG GTAALG C LV K DYF P E PVTVSW NSGALTSGV HTF PAV LQSSG LYS LSSVVTV
PSSS LGT
QTYICNVN H KPSNTKVDKRVEP KSCD KT HTCP P CPAP E LLGG PSVF LFP PK PK DTLM IS RTP
EVTCVV
VDVSH E DP E VK F N WYVDGVEVH NAKTK P RE EQYNSTYRVVSVLTVLHQDW LNG K EYKCKVS N
KA L
PAP I E KTISKAKGQP RE PQVYTLP PSREE MTK NQVS LTCLVKG FY PSD !AVE WES NGQP E N
NYKTTPP
SEQ ID NO: 418 Heavy Chain VLDSDGS F F LYSK LTVD KS RWQQG NVFSCSVM H EA
LH N HYTQKSLSLSPGK
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
KSG NTASLTISG LQAE D EADYYCASA DHSYHTVFGGGTK LTVLG QP KAAPSVT LF P PSSE E LOAN
KAT
LVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSN N KYAASSY LS LTP E QWKSH RSYSCQVTH E
SEQ ID NO: 419 Light Chain GSTVEKTVAPTECS
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCAGCCTCCACCAAGGGTCCAT
CGGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCT
GGTCAAGGACTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGG
CGTGCACACCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCG
TGCCCTCCAGCAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACAC
CAAGGTGGACAAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCA
GCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCAT
GATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGT
DNA Heavy
CAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGG
SEQ ID NO: 420 Chain AG CAGTACAACAG CACGTACCGGGTG GTCAG CGTCCTCACCGTCCTG
CACCAGGACTGG CTGA
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
ATGGCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCAT
CTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGA
GATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCC
GTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGA
CTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGG
GAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTC
TCCCTGTCTCCGGGTAAA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCGCTTCTGCTGACCATTCTTACCATACTGTGTTTGGCGGCGGCACGAA
GTTAACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGG
AGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGAC
AGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAA
ACAAAGCAACAACAAGTACGCGGCCAGCAGCTATCTGAGCCTGACGCCTGAGCAGTGGAAGTC
DNA Light
CCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCCC
SEQ ID NO: 421 Chain CTACAGAATGTTCA
MOR13659
SEQ ID NO: 422 (Kabat) HCDR1 SYDI H
SEQ ID NO: 423 (Kabat) H CD R2 RI DPYSG NT NYAQK F QG
SEQ ID NO: 424 (Kabat) H CD R3 GSFYTRDSYFDV
SEQ ID NO: 425 (Chothia) HCDR1 GYTFTSY
SEQ ID NO: 426 (Chothia) HCDR2 DPYSGN
SEQ ID NO: 427 (Chothia) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 428 (Kabat) LCDR1 TGTSSDVGTYNQVS
SEQ ID NO: 429 (Kabat) LCDR2 GVSKRPS
SEQ ID NO: 430 (Kabat) LCDR3 GSRTSHNWV
SEQ ID NO: 431 (Chothia) LCDR1 TSSDVGTYN Q
SEQ ID NO: 432 (Chothia) LCDR2 GVS
SEQ ID NO: 433 (Chothia) LCDR3 RTSHNW
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPGQG LEW MG RI DPYSGNTNYAQKF
SEQ ID NO: 434 VH QG RVTMTR DTS I STAYM E LS R LRS E
DTAVYYCARGSFYTRDSYFDVWGQGTLVTVSS
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
SEQ ID NO: 435 VL KSGNTASLTISGLQAEDEADYYCGSRTSH NWVFGGGTKLTVL
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
SEQ ID NO: 436 DNA VH TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCGGTTCTCGTACTTCTCATAACTGGGTGTTTGGCGGCGGCACGAAGT
SEQ ID NO: 437 DNA VL TAACCGTCCTA
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPGQG LEW MG RI DPYSGNTNYAQK F
QG RVTMTR DTS I STAYM E LS R LRS E DTAVYYCARGS FYTR DSYF DVWG QGTLVTVSSASTKG
PSV F P
LA PSS KSTSG GTAALG C LV K DYF P E PVTVSW NSGALTSGV HTF PAV LQSSG LYS LSSVVTV
PSSS LGT
QTYICNVN H KPSNTKVDKRVEP KSCD KT HTCP P CPAP E LLGG PSVF LFP PK PK DTLM IS RTP
EVTCVV
VDVSH E DP E VK F N WYVDGVEVH NAKTK P RE EQYNSTYRVVSVLTVLHQDW LNG K EYKCKVS N
KA L
PAP I E KTISKAKGQP RE PQVYTLP PSREE MTK NQVS LTCLVKG FY PSD !AVE WES NGQP E N
NYKTTPP
SEQ ID NO: 438 Heavy Chain VLDSDGS F F LYSK LTVD KS RWQQG NVFSCSVM H EA
LH N HYTQKSLSLSPGK
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
KSGNTASLTISGLQAEDEADYYCGSRTSH NWVFGGGTKLTVLGQPKAAPSVTLFPPSSEE LOAN KAT
LVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSN N KYAASSY LS LTP E QWKSH RSYSCQVTH E
SEQ ID NO: 439 Light Chain GSTVEKTVAPTECS
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCAGCCTCCACCAAGGGTCCAT
DNA Heavy
CGGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCT
SEQ ID NO: 440 Chain
GGTCAAGGACTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGG
61
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
CGTGCACACCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCG
TGCCCTCCAGCAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACAC
CAAGGTGGACAAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCA
GCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCAT
GATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGT
CAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGG
AG CAGTACAACAG CACGTACCGGGTG GTCAG CGTCCTCACCGTCCTG CACCAGGACTGG CTGA
ATGGCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCAT
CTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGA
GATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCC
GTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGA
CTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGG
GAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTC
TCCCTGTCTCCGGGTAAA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCGGTTCTCGTACTTCTCATAACTGGGTGTTTGGCGGCGGCACGAAGT
TAACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAG
CTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAG
TGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAAC
AAAGCAACAACAAGTACGCGGCCAGCAGCTATCTGAGCCTGACGCCTGAGCAGTGGAAGTCCC
DNA Light
ACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCCCCT
SEQ ID NO: 441 Chain ACAGAATGTTCA
MOR13660
SEQ ID NO: 442 (Kabat) HCDR1 SYDI H
SEQ ID NO: 443 (Kabat) H CD R2 RI DPYSG NT NYAQK F QG
SEQ ID NO: 444 (Kabat) H CD R3 GSFYTRDSYFDV
SEQ ID NO: 445 (Chothia) HCDR1 GYTFTSY
SEQ ID NO: 446 (Chothia) HCDR2 DPYSGN
SEQ ID NO: 447 (Chothia) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 448 (Kabat) LCDR1 TGTSSDVGTYNQVS
SEQ ID NO: 449 (Kabat) LCDR2 GVSKRPS
SEQ ID NO: 450 (Kabat) LCDR3 AVRGSQTLV
SEQ ID NO: 451 (Chothia) LCDR1 TSSDVGTYN Q
SEQ ID NO: 452 (Chothia) LCDR2 GVS
SEQ ID NO: 453 (Chothia) LCDR3 RGSQTL
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPGQG LEW MG RI DPYSGNTNYAQKF
SEQ ID NO: 454 VH QG RVTMTR DTS I STAYM E LS R LRS E
DTAVYYCARGSFYTRDSYFDVWGQGTLVTVSS
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
SEQ ID NO: 455 VL KSGNTASLTISGLQAEDEADYYCAVRGSQTLVFGGGTKLTVL
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
SEQ ID NO: 456 DNA VH TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCGCTGTTCGTGGTTCTCAGACTCTGGTGTTTGGCGGCGGCACGAAGT
SEQ ID NO: 457 DNA VL TAACCGTCCTA
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPGQG LEW MG RI DPYSGNTNYAQK F
QG RVTMTR DTS I STAYM E LS R LRS E DTAVYYCARGS FYTR DSYF DVWG QGTLVTVSSASTKG
PSV F P
LA PSS KSTSG GTAALG C LV K DYF P E PVTVSW NSGALTSGV HTF PAV LQSSG LYS LSSVVTV
PSSS LGT
QTYICNVN H KPSNTKVDKRVEP KSCD KT HTCP P CPAP E LLGG PSVF LFP PK PK DTLM IS RTP
EVTCVV
VDVSH E DP E VK F N WYVDGVEVH NAKTK P RE EQYNSTYRVVSVLTVLHQDW LNG K EYKCKVS N
KA L
PAP I E KTISKAKGQP RE PQVYTLP PSREE MTK NQVS LTCLVKG FY PSD !AVE WES NGQP E N
NYKTTPP
SEQ ID NO: 458 Heavy Chain VLDSDGS F F LYSK LTVD KS RWQQG NVFSCSVM H EA
LH N HYTQKSLSLSPGK
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
KSGNTASLTISGLQAEDEADYYCAVRGSQTLVFGGGTK LTVLGQPKAAPSVTLFPPSSE ELQANKATL
VCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSN N KYAASSYLSLTPE QWKSH RSYSCQVTH EG
SEQ ID NO: 459 Light Chain STVEKTVAPTECS
62
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCAGCCTCCACCAAGGGTCCAT
CGGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCT
GGTCAAGGACTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGG
CGTGCACACCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCG
TGCCCTCCAGCAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAG CCCAGCAACAC
CAAGGTGGACAAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCA
GCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCAT
GATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGT
CAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAG CCGCGGGAGG
AG CAGTACAACAG CACGTACCGGGTGGTCAGCGTCCTCACCGTCCTGCACCAGGACTGGCTGA
ATGGCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCAT
CTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGA
GATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCC
GTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGA
CTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGG
DNA Heavy
GAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTC
SEQ ID NO: 460 Chain TCCCTGTCTCCGGGTAAA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGG CACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCGCTGTTCGTGGTTCTCAGACTCTGGTGTTTGGCGGCGGCACGAAGT
TAACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAG
CTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAG
TGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAAC
AAAGCAACAACAAGTACGCGGCCAGCAGCTATCTGAGCCTGACGCCTGAGCAGTGGAAGTCCC
DNA Light ACAGAAGCTACAG
CTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCCCCT
SEQ ID NO: 461 Chain ACAGAATGTTCA
MOR13661
SEQ ID NO: 462 (Kabat) HCDR1 SYDI H
SEQ ID NO: 463 (Kabat) H CD R2 RI DPYSG NT NYAQK F QG
SEQ ID NO: 464 (Kabat) H CD R3 GSFYTRDSYFDV
SEQ ID NO: 465 (Chothia) HCDR1 GYTFTSY
SEQ ID NO: 466 (Chothia) HCDR2 D PYSGN
SEQ ID NO: 467 (Chothia) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 468 (Kabat) LCD R1 TGTSSDVGTYNQVS
SEQ ID NO: 469 (Kabat) LCDR2 GVSKRPS
SEQ ID NO: 470 (Kabat) LCDR3 GSRDSWAHV
SEQ ID NO: 471 (Chothia) LCDR1 TSSDVGTYN Q
SEQ ID NO: 472 (Chothia) LCDR2 GVS
SEQ ID NO: 473 (Chothia) LCDR3 RDSWAH
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPG QG LEW MG RI DPYSGNTNYAQK F
SEQ ID NO: 474 VH QG RVTMTR DTS I STAYM E LS R LRS E
DTAVYYCARGSFYTRDSYFDVWGQGTLVTVSS
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
SEQ ID NO: 475 VL KSGNTASLTISGLQAEDEADYYCGSRDSWAHVFGGGTKLTVL
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
SEQ ID NO: 476 DNA VH TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGG CACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCGGTTCTCGTGACTCTTGGGCTCATGTGTTTGGCGGCGGCACGAAGT
SEQ ID NO: 477 DNA VL TAACCGTCCTA
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPG QG LEW MG RI DPYSGNTNYAQK F
QG RVTMTR DTS I STAYM E LS R LRS E DTAVYYCARGSFYTRDSYFDVWGQGTLVTVSSASTKGPSVFP
LA PSS KSTSG GTAALG C LV K DYF P E PVTVSWNSGALTSGVHTF PAV LQSSG LYS LSSVVTV
PSSS LGT
SEQ ID NO: 478 Heavy Chain QTYICNVN H K PS NTKVDK RVE P KSCD KT HTCP P
CPAP E LLGG PSVF LF P PK PK DTLM IS RTP EVTCVV
63
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
VDVSH E DP E VK F N WYVDGVEVH NAKTK P RE E QYNSTYRVVSVLTVLHQDW LNG K EYKCKVS N
KA L
PAP I E KTISKAKGQP RE PQVYTLP PSREE MTK NQVS LTCLVKG FY PSD !AVE WES NGQP E N
NYKTTPP
VLDSDGS F F LYSK LTVD KS RWQQG NVFSCSVM H EA LH N HYTQKSLSLSPGK
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
KSGNTASLTISGLQAEDEADYYCGSRDSWAHVEGGGTKLTVLGQPKAAPSVTLFPPSSEE LOAN KAT
LVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSN N KYAASSY LS LTP E QWKSH RSYSCQVTH E
SEQ ID NO: 479 Light Chain GSTVEKTVAPTECS
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCAGCCTCCACCAAGGGTCCAT
CGGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCT
GGTCAAGGACTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGG
CGTGCACACCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCG
TGCCCTCCAGCAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAG CCCAGCAACAC
CAAGGTGGACAAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCA
GCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCAT
GATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGT
CAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAG CCGCGGGAGG
AG CAGTACAACAG CACGTACCGGGTGGTCAGCGTCCTCACCGTCCTGCACCAGGACTGGCTGA
ATGGCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCAT
CTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGA
GATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCC
GTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGA
CTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGG
DNA Heavy
GAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTC
SEQ ID NO: 480 Chain TCCCTGTCTCCGGGTAAA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGG CACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCGGTTCTCGTGACTCTTGGGCTCATGTGTTTGGCGGCGGCACGAAGT
TAACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAG
CTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAG
TGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAAC
AAAGCAACAACAAGTACGCGGCCAGCAGCTATCTGAGCCTGACGCCTGAGCAGTGGAAGTCCC
DNA Light ACAGAAGCTACAG
CTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCCCCT
SEQ ID NO: 481 Chain ACAGAATGTTCA
MOR13662
SEQ ID NO: 482 (Kabat) HCDR1 SYDI H
SEQ ID NO: 483 (Kabat) HCDR2 RI DPYSG NT NYAQK F QG
SEQ ID NO: 484 (Kabat) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 485 (Chothia) HCDR1 GYTFTSY
SEQ ID NO: 486 (Chothia) HCDR2 DPYSGN
SEQ ID NO: 487 (Chothia) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 488 (Kabat) LCDR1 TGTSSDVGTYNQV5
SEQ ID NO: 489 (Kabat) LCDR2 GVSKRPS
SEQ ID NO: 490 (Kabat) LCDR3 YSRAKTHWTDV
SEQ ID NO: 491 (Chothia) LCDR1 TSSDVGTYN Q
SEQ ID NO: 492 (Chothia) LCDR2 GVS
SEQ ID NO: 493 (Chothia) LCDR3 RAKTHVVTD
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPGQG LEW MG RI DPYSGNTNYAQK F
SEQ ID NO: 494 VH QG RVTMTR DTS I STAYM E LS R LRS E
DTAVYYCARGSFYTRDSYFDVWGQGTLVTVSS
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
SEQ ID NO: 495 VL KSGNTASLTISGLQAEDEADYYCYSRAKTHWTDVFGGGTKLTVL
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
SEQ ID NO: 496 DNA VH TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGG CACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
SEQ ID NO: 497 DNA VL
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
64
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCTACTCTCGTGCTAAAACTCATTGGACTGACGTGTTTGGCGGCGGCA
CGAAGTTAACCGTCCTA
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPGQG LEW MG RI DPYSGNTNYAQK F
QG RVTMTR DTS I STAYM E LS R LRS E DTAVYYCARGS FYTR DSYF DVWG QGTLVTVSSASTKG
PSV F P
LA PSS KSTSG GTAALG C LV K DYF P E PVTVSW NSGALTSGV HTF PAV LQSSG LYS LSSVVTV
PSSS LGT
QTYICNVN H KPSNTKVDKRVEP KSCD KT HTCP P CPAP E LLGG PSVF LFP PK PK DTLM IS RTP
EVTCVV
VDVSH E DP E VK F N WYVDGVEVH NAKTK P RE EQYNSTYRVVSVLTVLHQDW LNG K EYKCKVS N
KA L
PAP I E KTISKAKGQP RE PQVYTLP PSREE MTK NQVS LTCLVKG FY PSD !AVE WES NGQP E N
NYKTTPP
SEQ ID NO: 498 Heavy Chain VLDSDGS F F LYSK LTVD KS RWQQG NVFSCSVM H EA
LH N HYTQKSLSLSPGK
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
KSGNTASLTISGLQAEDEADYYCYSRAKTHWTDVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANK
ATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSN NKYAASSYLSLTPEQWKSH RSYSCQVT
SEQ ID NO: 499 Light Chain H EGSTVEKTVAPTECS
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCAGCCTCCACCAAGGGTCCAT
CGGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCT
GGTCAAGGACTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGG
CGTGCACACCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCG
TGCCCTCCAGCAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACAC
CAAGGTGGACAAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCA
GCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCAT
GATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGT
CAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGG
AG CAGTACAACAG CACGTACCGGGTG GTCAG CGTCCTCACCGTCCTG CACCAGGACTGG CTGA
ATGGCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCAT
CTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGA
GATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCC
GTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGA
CTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGG
DNA Heavy
GAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTC
SEQ ID NO: 500 Chain TCCCTGTCTCCGGGTAAA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCTACTCTCGTGCTAAAACTCATTGGACTGACGTGTTTGGCGGCGGCA
CGAAGTTAACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCT
GAGGAG CTTCAAG CCAACAAGG CCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAG CC
GTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACC
CTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTATCTGAGCCTGACGCCTGAGCAGTG
DNA Light
GAAGTCCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAG
SEQ ID NO: 501 Chain TGGCCCCTACAGAATGTTCA
MOR13663
SEQ ID NO: 502 (Kabat) HCDR1 SYDI H
SEQ ID NO: 503 (Kabat) H CD R2 RI DPYSG NT NYAQK F QG
SEQ ID NO: 504 (Kabat) H CD R3 GSFYTRDSYFDV
SEQ ID NO: 505 (Chothia) HCDR1 GYTFTSY
SEQ ID NO: 506 (Chothia) HCDR2 DPYSGN
SEQ ID NO: 507 (Chothia) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 508 (Kabat) LCDR1 TGTSSDVGTYNQVS
SEQ ID NO: 509 (Kabat) LCDR2 GVSKRPS
SEQ ID NO: 510 (Kabat) LCDR3 SVVVTS I KV FV
SEQ ID NO: 511 (Chothia) LCDR1 TSSDVGTYN Q
SEQ ID NO: 512 (Chothia) LCDR2 GVS
SEQ ID NO: 513 (Chothia) LCDR3 VVTSIKVF
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPGQG LEW MG RI DPYSGNTNYAQK F
SEQ ID NO: 514 VH QG RVTMTR DTS I STAYM E LS R LRS E
DTAVYYCARGSFYTRDSYFDVWGQGTLVTVSS
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
SEQ ID NO: 515 VL KSGNTASLTISGLQAEDEADYYCSVVVTSI KVFVFGGGTKLTVL
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
SEQ ID NO: 516 DNA VH
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCTCTGTTTGGACTTCTATCAAAGTTTTCGTGTTTGGCGGCGGCACGAA
SEQ ID NO: 517 DNA VL GTTAACCGTCCTA
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDIHWVRQAPGQGLEWMGRIDPYSGNTNYAQKF
QGRVTMTRDTSISTAYME LSRLRSEDTAVYYCARGSFYTRDSYFDVWGQGTLVTVSSASTKGPSVFP
LAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT
QTYICNVN H KPSNTKVDKRVEPKSCDKTHTCPPCPAPELLGGPSVF LFPPK PKDTLM IS RTPEVTCVV
VDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKAL
PAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPP
SEQ ID NO: 518 Heavy Chain
VLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK
DIALTQPASVSGSPGQSITISCTGTSSDVGTYNQVSWYQQHPGKAPKLMIYGVSKRPSGVSNRFSGS
KSGNTASLTISGLQAEDEADYYCSVVVTSIKVFVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKAT
LVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHE
SEQ ID NO: 519 Light Chain GSTVEKTVAPTECS
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCAGCCTCCACCAAGGGTCCAT
CGGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCT
GGTCAAGGACTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGG
CGTGCACACCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCG
TGCCCTCCAGCAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACAC
CAAGGTGGACAAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCA
GCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCAT
GATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGT
CAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGG
AGCAGTACAACAGCACGTACCGGGTGGTCAGCGTCCTCACCGTCCTGCACCAGGACTGGCTGA
ATGGCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCAT
CTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGA
GATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCC
GTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGA
CTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGG
DNA Heavy
GAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTC
SEQ ID NO: 520 Chain TCCCTGTCTCCGGGTAAA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCTCTGTTTGGACTTCTATCAAAGTTTTCGTGTTTGGCGGCGGCACGAA
GTTAACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGG
AGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGAC
AGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAA
ACAAAGCAACAACAAGTACGCGGCCAGCAGCTATCTGAGCCTGACGCCTGAGCAGTGGAAGTC
DNA Light
CCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCCC
SEQ ID NO: 521 Chain CTACAGAATGTTCA
MOR13664
SEQ ID NO: 522 (Kabat) HCDR1 SYDIH
SEQ ID NO: 523 (Kabat) HCDR2 RIDPYSGNTNYAQKFQG
SEQ ID NO: 524 (Kabat) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 525 (Chothia) HCDR1 GYTFTSY
SEQ ID NO: 526 (Chothia) HCDR2 DPYSGN
SEQ ID NO: 527 (Chothia) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 528 (Kabat) LCDR1 TGTSSDVGTYNQVS
SEQ ID NO: 529 (Kabat) LCDR2 GVSKRPS
SEQ ID NO: 530 (Kabat) LCDR3 SAYDASTQVV
SEQ ID NO: 531 (Chothia) LCDR1 TSSDVGTYNQ
SEQ ID NO: 532 (Chothia) LCDR2 GVS
66
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
SEQ ID NO: 533 (Chothia) LCDR3 YDASTQV
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDIHWVRQAPGQGLEWMGRIDPYSGNTNYAQKF
SEQ ID NO: 534 VH QGRVTMTRDTSISTAYME LSRLRSE
DTAVYYCARGSFYTRDSYFDVWGQGTLVTVSS
DIALTQPASVSGSPGQSITISCTGTSSDVGTYNQVSWYQQHPGKAPKLMIYGVSKRPSGVSNRFSGS
SEQ ID NO: 535 VL KSGNTASLTISGLQAEDEADYYCSAYDASTQVVFGGGTKLTVL
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
SEQ ID NO: 536 DNA VH TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCTCTGCTTACGACGCTTCTACTCAGGTTGTGTTTGGCGGCGGCACGA
SEQ ID NO: 537 DNA VL AGTTAACCGTCCTA
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDIHWVRQAPGQGLEWMGRIDPYSGNTNYAQKF
QGRVTMTRDTSISTAYME LSRLRSEDTAVYYCARGSFYTRDSYFDVWGQGTLVTVSSASTKGPSVFP
LAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT
QTYICNVN H KPSNTKVDKRVEPKSCDKTHTCPPCPAPELLGGPSVF LFPPKPKDTLM IS RTPEVTCVV
VDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKAL
PAPIEKTISKAKGQPRE PQVYTLPPSREE MTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPP
SEQ ID NO: 538 Heavy Chain
VLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK
DIALTQPASVSGSPGQSITISCTGTSSDVGTYNQVSWYQQHPGKAPKLMIYGVSKRPSGVSNRFSGS
KSGNTASLTISGLQAEDEADYYCSAYDASTQVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKAT
LVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHE
SEQ ID NO: 539 Light Chain GSTVEKTVAPTECS
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCAGCCTCCACCAAGGGTCCAT
CGGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCT
GGTCAAGGACTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGG
CGTGCACACCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCG
TGCCCTCCAGCAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACAC
CAAGGTGGACAAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCA
GCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCAT
GATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGT
CAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGG
AGCAGTACAACAGCACGTACCGGGTGGTCAGCGTCCTCACCGTCCTGCACCAGGACTGGCTGA
ATGGCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCAT
CTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGA
GATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCC
GTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGA
CTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGG
DNA Heavy
GAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTC
SEQ ID NO: 540 Chain TCCCTGTCTCCGGGTAAA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCTCTGCTTACGACGCTTCTACTCAGGTTGTGTTTGGCGGCGGCACGA
AGTTAACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAG
GAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGA
CAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCA
AACAAAGCAACAACAAGTACGCGGCCAGCAGCTATCTGAGCCTGACGCCTGAGCAGTGGAAGT
DNA Light
CCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCC
SEQ ID NO: 541 Chain CCTACAGAATGTTCA
MOR13665
SEQ ID NO: 542 (Kabat) HCDR1 SYDI H
SEQ ID NO: 543 (Kabat) HCDR2 RIDPYSGNTNYAQKFQG
SEQ ID NO: 544 (Kabat) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 545 (Chothia) HCDR1 GYTFTSY
SEQ ID NO: 546 (Chothia) HCDR2 DPYSGN
SEQ ID NO: 547 (Chothia) HCDR3 GSFYTRDSYFDV
67
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
SEQ ID NO: 548 (Kabat) LCDR1 TGTSSDVGTYNQVS
SEQ ID NO: 549 (Kabat) LCDR2 GVSKRPS
SEQ ID NO: 550 (Kabat) LCDR3 QSAAIATSV
SEQ ID NO: 551 (Chothia) LCDR1 TSSDVGTYNQ
SEQ ID NO: 552 (Chothia) LCDR2 GVS
SEQ ID NO: 553 (Chothia) LCDR3 AAIATS
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDIHWVRQAPGQGLEWMGRIDPYSGNTNYAQKF
SEQ ID NO: 554 VH QGRVTMTRDTSISTAYME LSRLRSE
DTAVYYCARGSFYTRDSYFDVWGQGTLVTVSS
DIALTQPASVSGSPGQSITISCTGTSSDVGTYNQVSWYQQHPGKAPKLMIYGVSKRPSGVSNRFSGS
SEQ ID NO: 555 VL KSGNTASLTISGLQAEDEADYYCQSAAIATSVFGGGTKLTVL
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
SEQ ID NO: 556 DNA VH TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCCAGTCTGCTGCTATCGCTACTTCTGTGTTTGGCGGCGGCACGAAGT
SEQ ID NO: 557 DNA VL TAACCGTCCTA
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDIHWVRQAPGQGLEWMGRIDPYSGNTNYAQKF
QGRVTMTRDTSISTAYME LSRLRSEDTAVYYCARGSFYTRDSYFDVWGQGTLVTVSSASTKGPSVFP
LAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT
QTYICNVN H KPSNTKVDKRVEP KSCDKTHTCPPCPAPELLGGPSVF LFPPK PKDTLM IS RTPEVTCVV
VDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKAL
PAPIEKTISKAKGQPRE PQVYTLPPSREE MTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPP
SEQ ID NO: 558 Heavy Chain
VLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK
DIALTQPASVSGSPGQSITISCTGTSSDVGTYNQVSWYQQHPGKAPKLMIYGVSKRPSGVSNRFSGS
KSGNTASLTISGLQAEDEADYYCQSAAIATSVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATL
VCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG
SEQ ID NO: 559 Light Chain STVEKTVAPTECS
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCAGCCTCCACCAAGGGTCCAT
CGGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCT
GGTCAAGGACTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGG
CGTGCACACCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCG
TGCCCTCCAGCAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACAC
CAAGGTGGACAAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCA
GCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCAT
GATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGT
CAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGG
AGCAGTACAACAGCACGTACCGGGTGGTCAGCGTCCTCACCGTCCTGCACCAGGACTGGCTGA
ATGGCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCAT
CTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGA
GATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCC
GTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGA
CTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGG
DNA Heavy
GAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTC
SEQ ID NO: 560 Chain TCCCTGTCTCCGGGTAAA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCCAGTCTGCTGCTATCGCTACTTCTGTGTTTGGCGGCGGCACGAAGT
TAACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAG
CTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAG
TGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAAC
AAAGCAACAACAAGTACGCGGCCAGCAGCTATCTGAGCCTGACGCCTGAGCAGTGGAAGTCCC
DNA Light
ACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCCCCT
SEQ ID NO: 561 Chain ACAGAATGTTCA
MOR13666
SEQ ID NO: 562 (Kabat) HCDR1 SYDI H
68
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
SEQ ID NO: 563 (Kabat) HCDR2 RI DPYSG NT NYAQK F QG
SEQ ID NO: 564 (Kabat) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 565 (Chothia) HCDR1 GYTFTSY
SEQ ID NO: 566 (Chothia) HCDR2 DPYSGN
SEQ ID NO: 567 (Chothia) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 568 (Kabat) LCDR1 TGTSSDVGTYNQVS
SEQ ID NO: 569 (Kabat) LCDR2 GVSKRPS
SEQ ID NO: 570 (Kabat) LCDR3 STTTYSFH MV
SEQ ID NO: 571 (Chothia) LCDR1 TSSDVGTYN Q
SEQ ID NO: 572 (Chothia) LCDR2 GVS
SEQ ID NO: 573 (Chothia) LCDR3 TTYSFH M
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPGQG LEW MG RI DPYSGNTNYAQKF
SEQ ID NO: 574 VH QG RVTMTR DTS I STAYM E LS R LRS E
DTAVYYCARGSFYTRDSYFDVWGQGTLVTVSS
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
SEQ ID NO: 575 VL KSGNTASLTISGLQAEDEADYYCSTTTYSFHMVFGGGTKLTVL
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
SEQ ID NO: 576 DNA VH TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCTCTACTACTACTTACTCTTTCCATATGGTGTTTGGCGGCGGCACGAA
SEQ ID NO: 577 DNA VL GTTAACCGTCCTA
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPGQG LEW MG RI DPYSGNTNYAQK F
QG RVTMTR DTS I STAYM E LS R LRS E DTAVYYCARGS FYTR DSYF DVWG QGTLVTVSSASTKG
PSV F P
LA PSS KSTSG GTAALG C LV K DYF P E PVTVSW NSGALTSGV HTF PAV LQSSG LYS LSSVVTV
PSSS LGT
QTYICNVN H K PS NTKVDKRVE P KSCD KT HTCP P CPAP E LLGG PSVF LF P PK PK DTLM IS
RTP EVTCVV
VDVSH E DP E VK F N WYVDGVEVH NAKTK P RE E QYNSTYRVVSVLTVLHQDW LNG K EYKCKVS N
KA L
PAP I E KTISKAKGQP RE PQVYTLP PSREE MTK NQVS LTCLVKG FY PSD !AVE WES NGQP E N
NYKTTPP
SEQ ID NO: 578 Heavy Chain VLDSDGS F F LYSK LTVD KS RWQQG NVFSCSVM H EA
LH N HYTQKSLSLSPGK
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
KSGNTASLTISGLQAEDEADYYCSTTTYSFH MVFGGGTKLTVLGQPKAAPSVTLFPPSSEE LQAN KAT
LVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSN N KYAASSY LS LTP E QWKSH RSYSCQVTH E
SEQ ID NO: 579 Light Chain GSTVEKTVAPTECS
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCAGCCTCCACCAAGGGTCCAT
CGGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCT
GGTCAAGGACTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGG
CGTGCACACCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCG
TGCCCTCCAGCAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACAC
CAAGGTGGACAAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCA
GCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCAT
GATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGT
CAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGG
AG CAGTACAACAG CACGTACCGGGTG GTCAG CGTCCTCACCGTCCTG CACCAGGACTGG CTGA
ATGGCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCAT
CTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGA
GATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCC
GTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGA
CTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGG
DNA Heavy
GAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTC
SEQ ID NO: 580 Chain TCCCTGTCTCCGGGTAAA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCTCTACTACTACTTACTCTTTCCATATGGTGTTTGGCGGCGGCACGAA
DNA Light
GTTAACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGG
SEQ ID NO: 581 Chain
AGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGAC
69
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
AGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAA
ACAAAGCAACAACAAGTACGCGGCCAGCAGCTATCTGAGCCTGACGCCTGAGCAGTGGAAGTC
CCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCCC
CTACAGAATGTTCA
MOR13667
SEQ ID NO: 582 (Kabat) HCDR1 SYDI H
SEQ ID NO: 583 (Kabat) H CD R2 RI DPYSG NT NYAQK F QG
SEQ ID NO: 584 (Kabat) H CD R3 GSFYTRDSYFDV
SEQ ID NO: 585 (Chothia) HCDR1 GYTFTSY
SEQ ID NO: 586 (Chothia) HCDR2 DPYSGN
SEQ ID NO: 587 (Chothia) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 588 (Kabat) LCDR1 TGTSSDVGTYNQVS
SEQ ID NO: 589 (Kabat) LCDR2 GVSKRPS
SEQ ID NO: 590 (Kabat) LCDR3 QAWDYRQTIV
SEQ ID NO: 591 (Chothia) LCDR1 TSSDVGTYN Q
SEQ ID NO: 592 (Chothia) LCDR2 GVS
SEQ ID NO: 593 (Chothia) LCDR3 WDYRQTI
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPGQG LEW MG RI DPYSGNTNYAQKF
SEQ ID NO: 594 VH QG RVTMTR DTS I STAYM E LS R LRS E
DTAVYYCARGSFYTRDSYFDVWGQGTLVTVSS
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
SEQ ID NO: 595 VL KSGNTASLTISGLQAEDEADYYCQAWDYRQTIVFGGGTKLTVL
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
SEQ ID NO: 596 DNA VH TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCCAGGCTTGGGACTACCGTCAGACTATCGTGTTTGGCGGCGGCACG
SEQ ID NO: 597 DNA VL AAGTTAACCGTCCTA
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPGQG LEW MG RI DPYSGNTNYAQK F
QG RVTMTR DTS I STAYM E LS R LRS E DTAVYYCARGS FYTR DSYF DVWG QGTLVTVSSASTKG
PSV F P
LA PSS KSTSG GTAALG C LV K DYF P E PVTVSW NSGALTSGV HTF PAV LQSSG LYS LSSVVTV
PSSS LGT
QTYICNVN H KPSNTKVDKRVEP KSCD KT HTCP P CPAP E LLGG PSVF LFP PK PK DTLM IS RTP
EVTCVV
VDVSH E DP E VK F N WYVDGVEVH NAKTK P RE EQYNSTYRVVSVLTVLHQDW LNG K EYKCKVS N
KA L
PAP I E KTISKAKGQP RE PQVYTLP PSREE MTK NQVS LTCLVKG FY PSD !AVE WES NGQP E N
NYKTTPP
SEQ ID NO: 598 Heavy Chain VLDSDGS F F LYSK LTVD KS RWQQG NVFSCSVM H EA
LH N HYTQKSLSLSPGK
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
KSGNTASLTISGLQAEDEADYYCQAWDYRQTIVFGGGTKLTVLGQPKAAPSVTLFPPSSEE LQAN KA
T LVCLIS DFY PGAVTVAW KA DSS PVKAG VETTTPSKQSN N KYAASSYLSLTPE QW KS H
RSYSCQVTH
SEQ ID NO: 599 Light Chain EGSTVEKTVAPTECS
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCAGCCTCCACCAAGGGTCCAT
CGGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCT
GGTCAAGGACTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGG
CGTGCACACCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCG
TGCCCTCCAGCAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACAC
CAAGGTGGACAAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCA
GCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCAT
GATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGT
CAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGG
AG CAGTACAACAG CACGTACCGGGTG GTCAG CGTCCTCACCGTCCTG CACCAGGACTGG CTGA
ATGGCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCAT
CTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGA
GATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCC
GTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGA
CTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGG
DNA Heavy
GAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTC
SEQ ID NO: 600 Chain TCCCTGTCTCCGGGTAAA
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCCAGGCTTGGGACTACCGTCAGACTATCGTGTTTGGCGGCGGCACG
AAGTTAACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGA
GGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTG
ACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCC
AAACAAAGCAACAACAAGTACGCGGCCAGCAGCTATCTGAGCCTGACGCCTGAGCAGTGGAAG
DNA Light
TCCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCC
SEQ ID NO: 601 Chain CCTACAGAATGTTCA
MOR13668
SEQ ID NO: 602 (Kabat) HCDR1 SYDI H
SEQ ID NO: 603 (Kabat) H CD R2 RI DPYSG NT NYAQK F QG
SEQ ID NO: 604 (Kabat) H CD R3 GSFYTRDSYFDV
SEQ ID NO: 605 (Chothia) HCDR1 GYTFTSY
SEQ ID NO: 606 (Chothia) HCDR2 DPYSGN
SEQ ID NO: 607 (Chothia) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 608 (Kabat) LCDR1 TGTSSDVGTYNQVS
SEQ ID NO: 609 (Kabat) LCDR2 GVSKRPS
SEQ ID NO: 610 (Kabat) LCDR3 QVWDSDQAMV
SEQ ID NO: 611 (Chothia) LCDR1 TSSDVGTYN Q
SEQ ID NO: 612 (Chothia) LCDR2 GVS
SEQ ID NO: 613 (Chothia) LCDR3 WDSDQAM
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPG QG LEW MG RI DPYSGNTNYAQK F
5E0 ID NO: 614 VH QG RVTMTR DTS I STAYM E LS R LRS E
DTAVYYCARGSFYTRDSYFDVWGQGTLVTVSS
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
SEQ ID NO: 615 VL KSGNTASLTISGLQAEDEADYYCQVWDSDQAMVFGGGTKLTVL
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
SEQ ID NO: 616 DNA VH TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCCAGGTTTGGGACTCTGACCAGGCTATGGTGTTTGGCGGCGGCACG
SEQ ID NO: 617 DNA VL AAGTTAACCGTCCTA
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPG QG LEW MG RI DPYSGNTNYAQK F
QG RVTMTR DTS I STAYM E LS R LRS E DTAVYYCARGS FYTR DSYF DVWG QGTLVTVSSASTKG
PSV F P
LA PSS KSTSG GTAALG C LV K DYF P E PVTVSW NSGALTSGV HTF PAV LQSSG LYS LSSVVTV
PSSS LGT
QTYICNVN H K PS NTKVDK RVE P KSCD KT HTCP P CPAP E LLGG PSVF LF P PK PK DTLM
IS RTP EVTCVV
VDVSH E DP E VK F N WYVDGVEVH NA KTK P RE E QYNSTYRVVSVLTVLHQDW LNG K EYKCKVS
N KA L
PAP I E KTISKAKG QP RE PQVYTLP PSREE MTK NQVS LTCLVKG FY PSD !AVE WES NG QP E
N NYKTTPP
SEQ ID NO: 618 Heavy Chain VLDSDGS F F LYSK LTVD KS RWQQG NVFSCSVM H EA
LH N HYTQKSLSLSPGK
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
KSGNTASLTISGLQAEDEADYYCQVWDSDQAMVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANK
ATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSN NKYAASSYLSLTPEQWKSH RSYSCQVT
SEQ ID NO: 619 Light Chain H EGSTVEKTVAPTECS
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCAGCCTCCACCAAGGGTCCAT
CGGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCT
GGTCAAGGACTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGG
CGTGCACACCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCG
TGCCCTCCAGCAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACAC
CAAGGTGGACAAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCA
GCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCAT
GATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGT
DNA Heavy
CAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGG
SEQ ID NO: 620 Chain AG CAGTACAACAG CACGTACCGGGTG GTCAG CGTCCTCACCGTCCTG
CACCAGGACTGG CTGA
71
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
ATGGCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCAT
CTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGA
GATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCC
GTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGA
CTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGG
GAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTC
TCCCTGTCTCCGGGTAAA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCCAGGTTTGGGACTCTGACCAGGCTATGGTGTTTGGCGGCGGCACG
AAGTTAACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGA
GGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTG
ACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCC
AAACAAAGCAACAACAAGTACGCGGCCAGCAGCTATCTGAGCCTGACGCCTGAGCAGTGGAAG
DNA Light
TCCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCC
SEQ ID NO: 621 Chain CCTACAGAATGTTCA
MOR13669
SEQ ID NO: 622 (Kabat) HCDR1 SYDI H
SEQ ID NO: 623 (Kabat) H CD R2 RI DPYSG NT NYAQK F QG
SEQ ID NO: 624 (Kabat) H CD R3 GSFYTRDSYFDV
SEQ ID NO: 625 (Chothia) HCDR1 GYTFTSY
SEQ ID NO: 626 (Chothia) HCDR2 DPYSGN
SEQ ID NO: 627 (Chothia) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 628 (Kabat) LCDR1 TGTSSDVGTYNQVS
SEQ ID NO: 629 (Kabat) LCDR2 GVSKRPS
SEQ ID NO: 630 (Kabat) LCDR3 STATAMTVSLV
SEQ ID NO: 631 (Chothia) LCDR1 TSSDVGTYN Q
SEQ ID NO: 632 (Chothia) LCDR2 GVS
SEQ ID NO: 633 (Chothia) LCDR3 ATAMTVSL
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPG QG LEW MG RI DPYSGNTNYAQKF
SEQ ID NO: 634 VH QG RVTMTR DTS I STAYM E LS R LRS E
DTAVYYCARGSFYTRDSYFDVWGQGTLVTVSS
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
SEQ ID NO: 635 VL KSG NTAS LTI SG LQAE D EADYYCSTATA MTVS LV FGGGTK LTV
L
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
SEQ ID NO: 636 DNA VH TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCTCTACTGCTACTGCTATGACTGTTTCTCTGGTGTTTGGCGGCGGCAC
SEQ ID NO: 637 DNA VL GAAGTTAACCGTCCTA
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPG QG LEW MG RI DPYSGNTNYAQK F
QG RVTMTR DTS I STAYM E LS R LRS E DTAVYYCARGS FYTR DSYF DVWG QGTLVTVSSASTKG
PSV F P
LA PSS KSTSG GTAALG C LV K DYF P E PVTVSW NSGALTSGV HTF PAV LQSSG LYS LSSVVTV
PSSS LGT
QTYICNVN H K PS NTKVDK RVE P KSCD KT HTCP P CPAP E LLGG PSVF LF P PK PK DTLM
IS RTP EVTCVV
VDVSH E DP E VK F N WYVDGVEVH NA KTK P RE E QYNSTYRVVSVLTVLHQDW LNG K EYKCKVS
N KA L
PAP I E KTISKAKG QP RE PQVYTLP PSREE MTK N QVS LTCLVKG FY PSD !AVE WES NG QP E
N NYKTTPP
SEQ ID NO: 638 Heavy Chain VLDSDGS F F LYSK LTVD KS RWQQG NVFSCSVM H EA
LH N HYTQKSLSLSPGK
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
KSGNTASLTISGLQAEDEADYYCSTATAMTVSLVFGGGTK LTVLGQPKAAPSVTLFPPSSEE LQAN KA
T LVCLIS DFY PGAVTVAW KA DSS PVKAG VETTTPSKQSN N KYAASSYLSLTPE QW KS H
RSYSCQVTH
SEQ ID NO: 639 Light Chain EGSTVEKTVAPTECS
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCAGCCTCCACCAAGGGTCCAT
DNA Heavy
CGGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCT
SEQ ID NO: 640 Chain
GGTCAAGGACTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGG
72
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
CGTGCACACCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCG
TGCCCTCCAGCAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACAC
CAAGGTGGACAAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCA
GCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCAT
GATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGT
CAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGG
AG CAGTACAACAG CACGTACCGGGTG GTCAG CGTCCTCACCGTCCTG CACCAGGACTGG CTGA
ATGGCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCAT
CTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGA
GATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCC
GTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGA
CTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGG
GAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTC
TCCCTGTCTCCGGGTAAA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCTCTACTGCTACTGCTATGACTGTTTCTCTGGTGTTTGGCGGCGGCAC
GAAGTTAACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTG
AGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGT
GACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCT
CCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTATCTGAGCCTGACGCCTGAGCAGTGGA
DNA Light
AGTCCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTG
SEQ ID NO: 641 Chain GCCCCTACAGAATGTTCA
MOR13670
SEQ ID NO: 642 (Kabat) HCDR1 SYD I H
SEQ ID NO: 643 (Kabat) H CD R2 RI DPYSG NT NYAQK F QG
SEQ ID NO: 644 (Kabat) H CD R3 GSFYTRDSYFDV
SEQ ID NO: 645 (Chothia) HCDR1 GYTFTSY
SEQ ID NO: 646 (Chothia) HCDR2 DPYSGN
SEQ ID NO: 647 (Chothia) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 648 (Kabat) LCDR1 TGTSSDVGTYNQVS
SEQ ID NO: 649 (Kabat) LCDR2 GVSKRPS
SEQ ID NO: 650 (Kabat) LCDR3 QVADQGWHQV
SEQ ID NO: 651 (Chothia) LCDR1 TSSDVGTYN Q
SEQ ID NO: 652 (Chothia) LCDR2 GVS
SEQ ID NO: 653 (Chothia) LCDR3 ADQGWHQ
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPG QG LEW MG RI DPYSGNTNYAQKF
SEQ ID NO: 654 VH QG RVTMTR DTS I STAYM E LS R LRS E
DTAVYYCARGSFYTRDSYFDVWGQGTLVTVSS
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
SEQ ID NO: 655 VL KSGNTASLTISGLQAEDEADYYCQVADQGWHQVFGGGTKLTVL
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
SEQ ID NO: 656 DNA VH TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCCAGGTTGCTGACCAGGGTTGGCATCAGGTGTTTGGCGGCGGCACG
SEQ ID NO: 657 DNA VL AAGTTAACCGTCCTA
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPG QG LEW MG RI DPYSGNTNYAQK F
QG RVTMTR DTS I STAYM E LS R LRS E DTAVYYCARGS FYTR DSYF DVWG QGTLVTVSSASTKG
PSV F P
LA PSS KSTSG GTAALG C LV K DYF P E PVTVSW NSGALTSGV HTF PAV LQSSG LYS LSSVVTV
PSSS LGT
QTYICNVN H K PS NTKVDK RVE P KSCD KT HTCP P CPAP E LLGG PSVF LF P PK PK DTLM
IS RTP EVTCVV
VDVSH E DP E VK F N WYVDGVEVH NA KTK P RE E QYNSTYRVVSVLTVLHQDW LNG K EYKCKVS
N KA L
PAP I E KTISKAKG QP RE PQVYTLP PSREE MTK NQVS LTCLVKG FY PSD !AVE WES NG QP E
N NYKTTPP
SEQ ID NO: 658 Heavy Chain VLDSDGS F F LYSK LTVD KS RWQQG NVFSCSVM H EA
LH N HYTQKSLSLSPGK
DIALTQPASVSGSPGQSITISCTGTSSDVGTYN QVSWYQQH PG KAP K LMIYGVSKRPSGVSNRFSGS
KSGNTASLTISGLQAEDEADYYCQVADQGWHQVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANK
ATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSN N KYAASSYLSLTPE QWKSH RSYSCQVT
SEQ ID NO: 659 Light Chain H EGSTVEKTVAPTECS
73
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGAAGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCAGCCTCCACCAAGGGTCCAT
CGGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCT
GGTCAAGGACTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGG
CGTGCACACCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCG
TGCCCTCCAGCAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAG CCCAGCAACAC
CAAGGTGGACAAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCA
GCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCAT
GATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGT
CAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAG CCGCGGGAGG
AG CAGTACAACAG CACGTACCGGGTGGTCAGCGTCCTCACCGTCCTGCACCAGGACTGGCTGA
ATGGCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCAT
CTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGA
GATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCC
GTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGA
CTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGG
DNA Heavy
GAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTC
SEQ ID NO: 660 Chain TCCCTGTCTCCGGGTAAA
GATATCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGG CACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCCAGGTTGCTGACCAGGGTTGGCATCAGGTGTTTGGCGGCGGCACG
AAGTTAACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCG CCCTCCTCTGA
GGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTG
ACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCC
AAACAAAGCAACAACAAGTACGCGGCCAGCAGCTATCTGAGCCTGACGCCTGAGCAGTGGAAG
DNA Light
TCCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCC
SEQ ID NO: 661 Chain CCTACAGAATGTTCA
MOR14537
SEQ ID NO: 662 (Kabat) HCDR1 SYDI H
SEQ ID NO: 663 (Kabat) H CD R2 RI DPYSG NT NYAQK F QG
SEQ ID NO: 664 (Kabat) H CD R3 GSFYTRDSYFDV
SEQ ID NO: 665 (Chothia) HCDR1 GYTFTSY
SEQ ID NO: 666 (Chothia) HCDR2 D PYSG N
SEQ ID NO: 667 (Chothia) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 668 (Kabat) LCD R1 TGTSSDVGTYNQVS
SEQ ID NO: 669 (Kabat) LCDR2 GVSKRPS
SEQ ID NO: 670 (Kabat) LCD R3 SSATQK PDVTV
SEQ ID NO: 671 (Chothia) LCDR1 TSSDVGTYN Q
SEQ ID NO: 672 (Chothia) LCDR2 GVS
SEQ ID NO: 673 (Chothia) LCDR3 ATQKPDVT
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPG QG LEW MG RI DPYSG NTNYAQK F
SEQ ID NO: 674 VH QG RVTMTR DTS I STAYM E LS R LRS D
DTAVYYCARGSFYTRDSYFDVWGQGTLVTVSS
QSALTQPASVSGSPGQSITISCTGTSSDVGTYNQVSWYQQH PGKAPKLM IYGVSK RPSGVSNRFSG
SEQ ID NO: 675 VL SKSGNTASLTISGLQAEDEADYYCSSATQKPDVTVFGGGTKLTVL
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGACGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
SEQ ID NO: 676 DNA VH TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCA
CAGAGCGCGCTGACCCAGCCGGCGAG CGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGG CACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCTCTTCTGCTACTCAGAAACCGGACGTTACTGTGTTTGGCGGCGGCA
SEQ ID NO: 677 DNA VL CGAAGTTAACCGTCCTA
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPG QG LEW MG RI DPYSG NTNYAQK F
QG RVTMTR DTS I STAYM E LS R LRS D DTAVYYCARGSFYTRDSYF DVWG QGTLVTVSSAST KG
PSV F P
LA PSS KSTSG GTAALG C LV K DYF P E PVTVSWNSGALTSGVHTF PAVLQSSG LYS LSSVVTV
PSSS LGT
SEQ ID NO: 678 Heavy Chain QTYICNVN H K PS NT KVDK RVE P KSCD KT HTCP P
CPAP E LLGG PSVF LFPPK PK DTLM IS RTP EVTCVV
74
CA 02857939 2014-06-02
WO 2013/084151 PCT/1B2012/056956
VDVSH E DP E VK F N WYVDGVEVH NA KTK PRE E QYNSTYRVVSVLTVLH QDW LNG K EYKCKVS
N KA L
PAP I E KTISKAKG QP RE PQVYTLP PSRE E MTK N QVS LTC LVKG FY PSD !AVE WES NG QP
E N NYKTTPP
VLDSDGS F F LYSK LTVD KS RWQQG NVFSCSV M H EA LH N HYTQKSLSLSPGK
QSALTQPASVSGSPGQSITISCTGTSSDVGTYNQVSWYQQH PGKAPKLM IYGVSK RPSGVSNRFSG
SKSGNTASLTISGLQAE D EADYYCSSATQKPDVIVEGGGTKLTVLG QPKAAPSVTLFPPSSE E LOAN K
ATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSN NKYAASSYLSLTPEQWKSH RSYSCQVT
SEQ ID NO: 679 Light Chain H EGSTVEKTVAPTECS
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGACGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCAGCCTCCACCAAGGGTCCAT
CGGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCT
GGTCAAGGACTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGG
CGTGCACACCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCG
TGCCCTCCAGCAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAG CCCAGCAACAC
CAAGGTGGACAAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCA
GCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCAT
GATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGT
CAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAG CCGCGGGAGG
AG CAGTACAACAG CACGTACCGGGTGGTCAGCGTCCTCACCGTCCTGCACCAGGACTGGCTGA
ATGGCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCAT
CTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGA
GATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCC
GTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGA
CTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGG
DNA Heavy
GAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTC
SEQ ID NO: 680 Chain TCCCTGTCTCCGGGTAAA
CAGAGCGCGCTGACCCAGCCGGCGAG CGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGG CACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCTCTTCTGCTACTCAGAAACCGGACGTTACTGTGTTTGGCGGCGGCA
CGAAGTTAACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCT
GAGGAGCTTCAAG CCAACAAGG CCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAG CC
GTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACC
CTCCAAACAAAGCAACAACAAGTACG CGGCCAGCAGCTATCTGAGCCTGACG CCTGAGCAGTG
DNA Light
GAAGTCCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAG
SEQ ID NO: 681 Chain TGGCCCCTACAGAATGTTCA
MOR14538
SEQ ID NO: 682 (Kabat) HCDR1 SYDI H
SEQ ID NO: 683 (Kabat) HCDR2 RI DPYSG NT NYAQK F QG
SEQ ID NO: 684 (Kabat) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 685 (Chothia) HCDR1 GYTFTSY
SEQ ID NO: 686 (Chothia) HCDR2 DPYSGN
SEQ ID NO: 687 (Chothia) HCDR3 GSFYTRDSYFDV
SEQ ID NO: 688 (Kabat) LCDR1 TGTSSDVGTYNQV5
SEQ ID NO: 689 (Kabat) LCDR2 GVSKRPS
SEQ ID NO: 690 (Kabat) LCDR3 ASADHSYHTV
SEQ ID NO: 691 (Chothia) LCDR1 TSSDVGTYN Q
SEQ ID NO: 692 (Chothia) LCDR2 GVS
SEQ ID NO: 693 (Chothia) LCDR3 ADHSYHT
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPG QG LEW MG RI DPYSGNTNYAQK F
SEQ ID NO: 694 VH QG RVTMTR DTS I STAYM E LS R LRS D
DTAVYYCARGSFYTRDSYFDVWGQGTLVTVSS
QSALTQPASVSGSPGQSITISCTGTSSDVGTYNQVSWYQQH PGKAPKLM IYGVSK RPSGVSNRFSG
SEQ ID NO: 695 VL SKSGNTASLTISGLQAEDEADYYCASADHSYHTVFGGGTKLTVL
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGACGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
SEQ ID NO: 696 DNA VH TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCA
CAGAGCGCGCTGACCCAGCCGGCGAG CGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGG CACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
SEQ ID NO: 697 DNA VL
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
CA 02857939 2014-06-02
WO 2013/084151
PCT/1B2012/056956
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCGCTTCTGCTGACCATTCTTACCATACTGTGTTTGGCGGCGGCACGAA
GTTAACCGTCCTA
QVQLVQSGAEVKK PGASVKVSCKASGYTFTSYD I H WVRQAPG QG LEW MG RI DPYSGNTNYAQK F
QGRVTMTRDTSISTAYME LSRLRSDDTAVYYCARGSFYTRDSYFDVWGQGTLVTVSSASTKGPSVFP
LAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT
QTYICNVN H KPSNTKVDKRVEPKSCDKTHTCPPCPAPELLGGPSVF LFPPK PKDTLM IS RTPEVTCVV
VDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKAL
PAP I E KTISKAKG QP RE PQVYTLP PSRE E MTK N QVS LTC LVKG FY PSD !AVE WES NG QP
E N NYKTTPP
SEQ ID NO: 698 Heavy Chain VLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHN
HYTQKSLSLSPGK
QSALTQPASVSGSPGQSITISCTGTSSDVGTYNQVSWYQQH PGKAPKLM IYGVSK RPSGVSNRFSG
SKSGNTASLTISGLQAEDEADYYCASADHSYHTVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKA
TLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTH
SEQ ID NO: 699 Light Chain EGSTVEKTVAPTECS
CAGGTGCAATTGGTGCAGAGCGGTGCGGAAGTGAAAAAACCGGGTGCCAGCGTGAAAGTTAG
CTGCAAAGCGTCCGGATATACCTTCACTTCTTACGACATCCATTGGGTGCGCCAGGCCCCGGGC
CAGGGCCTCGAGTGGATGGGCCGTATCGACCCGTACTCTGGCAACACGAACTACGCGCAGAAA
TTTCAGGGCCGGGTGACCATGACCCGTGATACCAGCATTAGCACCGCGTATATGGAACTGAGCC
GTCTGCGTAGCGACGATACGGCCGTGTATTATTGCGCGCGTGGTTCTTTCTACACTCGTGACTCT
TACTTCGATGTTTGGGGCCAAGGCACCCTGGTGACTGTTAGCTCAGCCTCCACCAAGGGTCCAT
CGGTCTTCCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGGCCCTGGGCTGCCT
GGTCAAGGACTACTTCCCCGAACCGGTGACGGTGTCGTGGAACTCAGGCGCCCTGACCAGCGG
CGTGCACACCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCG
TGCCCTCCAGCAGCTTGGGCACCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACAC
CAAGGTGGACAAGAGAGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGTGCCCA
GCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTCCCCCCAAAACCCAAGGACACCCTCAT
GATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGGT
CAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCCAAGACAAAGCCGCGGGAGG
AGCAGTACAACAGCACGTACCGGGTGGTCAGCGTCCTCACCGTCCTGCACCAGGACTGGCTGA
ATGGCAAGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCCATCGAGAAAACCAT
CTCCAAAGCCAAAGGGCAGCCCCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGA
GATGACCAAGAACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGCGACATCGCC
GTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGA
CTCCGACGGCTCCTTCTTCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAGGG
DNA Heavy
GAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAACCACTACACGCAGAAGAGCCTC
SEQ ID NO: 700 Chain TCCCTGTCTCCGGGTAAA
CAGAGCGCGCTGACCCAGCCGGCGAGCGTGAGCGGTAGCCCGGGCCAGAGCATTACCATTAGC
TGCACCGGCACCAGCAGCGATGTGGGCACTTACAACCAGGTGTCTTGGTACCAGCAGCATCCG
GGCAAGGCGCCGAAACTGATGATCTACGGTGTTTCTAAACGTCCGAGCGGCGTGAGCAACCGT
TTTAGCGGATCCAAAAGCGGCAACACCGCGAGCCTGACCATTAGCGGCCTGCAAGCGGAAGAC
GAAGCGGATTATTACTGCGCTTCTGCTGACCATTCTTACCATACTGTGTTTGGCGGCGGCACGAA
GTTAACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGG
AGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGAC
AGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAA
ACAAAGCAACAACAAGTACGCGGCCAGCAGCTATCTGAGCCTGACGCCTGAGCAGTGGAAGTC
DNA Light
CCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCCC
SEQ ID NO: 701 Chain CTACAGAATGTTCA
In one aspect, the present invention provides antibodies that specifically
bind to domain 3 of
HER3 protein (e.g., human and/or cynomologus HER3), the antibodies comprising
a VH
domain having an amino acid sequence of SEQ ID NO: 14, 34, 54, 74, 94, 114,
134, 154, and
174. In another, the present invention provides antibodies that specifically
bind specifically
bind to domain 3 of HER3 protein (e.g., human and/or cynomologus HER3), the
antibodies
comprising a VL domain having an amino acid sequence of SEQ ID NO: 15, 35, 55,
75, 95,
115, 135, 155, and 175.
In one aspect, the present invention provides antibodies that specifically
bind to domains 3-4
of HER3 protein (e.g., human and/or cynomologus HER3), the antibodies
comprising a VH
domain having an amino acid sequence of SEQ ID NO: 194, 214, 234, 254, 274,
294, 314,
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334, 354, 374, 394, 414, 434, 454, 474, 494, 514, 534, 554, 574, 594, 614,
634, 654, 674, and
694. In another aspect, the present invention provides antibodies that
specifically bind
specifically bind to domain 3 of HER3 protein (e.g., human and/or cynomologus
HER3), the
antibodies comprising a VL domain having an amino acid sequence of SEQ ID NO:
195, 215,
235, 255, 275, 295, 315, 335, 355, 375, 395, 415, 435, 455, 475, 495, 515,
535, 555, 575, 595,
615, 635, 655, 675, and 695.
Since each of these antibodies or fragments thereof can bind to HER3, the VH,
VL, full length
light chain, and full length heavy chain sequences (amino acid sequences and
the nucleotide
sequences encoding the amino acid sequences) can be "mixed and matched" to
create other
HER3 antibodies of the invention. Such "mixed and matched" HER3 antibodies can
be tested
using the binding assays known in the art (e.g., ELISAs, and other assays
described in the
Example section). When these chains are mixed and matched, a VH sequence from
a
particular VH/VL pairing should be replaced with a structurally similar VH
sequence.
Likewise a full length heavy chain sequence from a particular full length
heavy chain / full
length light chain pairing should be replaced with a structurally similar full
length heavy chain
sequence. Likewise, a VL sequence from a particular VH/VL pairing should be
replaced with
a structurally similar VL sequence. Likewise a full length light chain
sequence from a
particular full length heavy chain / full length light chain pairing should be
replaced with a
structurally similar full length light chain sequence.
Accordingly, in one aspect, the invention provides an isolated monoclonal
antibody or
fragment thereof having: a heavy chain variable region comprising an amino
acid sequence
selected from the group consisting of SEQ ID NO: 14, 34, 54, 74, 94, 114, 134,
154, and 174;
and a light chain variable region comprising an amino acid sequence selected
from the group
consisting of SEQ ID NOs: 15, 35, 55, 75, 95, 115, 135, 155, and 175; wherein
the antibody
specifically binds to domain 3 of HER3 (e.g., human and/or cynomologus).
Accordingly, in one aspect, the invention provides an isolated monoclonal
antibody or
fragment thereof having: a heavy chain variable region comprising an amino
acid sequence
selected from the group consisting of SEQ ID NO: 194, 214, 234, 254, 274, 294,
314, 334,
354, 374, 394, 414, 434, 454, 474, 494, 514, 534, 554, 574, 594, 614, 634,
654, 674, and 694;
and a light chain variable region comprising an amino acid sequence selected
from the group
consisting of SEQ ID NOs: 195, 215, 235, 255, 275, 295, 315, 335, 355, 375,
395, 415, 435,
455, 475, 495, 515, 535, 555, 575, 595, 615, 635, 655, 675, and 695; wherein
the antibody
specifically binds to domain 3 of HER3 (e.g., human and/or cynomologus).
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In a specific embodiment, an antibody that binds to domain 3 of HER3 comprises
a VH of
SEQ ID NO. 14 and VL of SEQ ID NO: 15. In a specific embodiment, an antibody
that binds
to domain 3 of HER3 comprises a VH of SEQ ID NO: 34 and VL of SEQ ID NO: 35.
In a
specific embodiment, an antibody that binds to domain 3 of HER3 comprises a VH
of SEQ ID
NO: 54 and VL of SEQ ID NO: 55. In a specific embodiment, an antibody that
binds to
domain 3 of HER3 comprises a SEQ ID NO: 74 and VL of SEQ ID NO: 75. In a
specific
embodiment, an antibody that binds to domain 3 of HER3 comprises a VH of SEQ
ID NO: 94
and VL of SEQ ID NO: 95. In a specific embodiment, an antibody that binds to
domain 3 of
HER3 comprises a VH of SEQ ID NO: 114 and VL of SEQ ID NO: 115. In a specific
embodiment, an antibody that binds to domain 3 of HER3 comprises a VH of SEQ
ID NO:
134 and VL of SEQ ID NO: 135. In a specific embodiment, an antibody that binds
to domain
3 of HER3 comprises a VH of SEQ ID NO: 154 and VL of SEQ ID NO: 155. In a
specific
embodiment, an antibody that binds to domain 3 of HER3 comprises a VH of SEQ
ID NO:
174 and VL of SEQ ID NO: 175.
In a specific embodiment, an antibody that binds to domains 3-4 of HER3
comprises a VH of
SEQ ID NO. 194 and VL of SEQ ID NO: 195. In a specific embodiment, an antibody
that
binds to domains 3-4 of HER3 comprises a VH of SEQ ID NO: 214 and VL of SEQ ID
NO:
215. In a specific embodiment, an antibody that binds to domains 3-4 of HER3
comprises a
VH of SEQ ID NO: 234 and VL of SEQ ID NO: 235. In a specific embodiment, an
antibody
that binds to domains 3-4 of HER3 comprises a SEQ ID NO: 254 and VL of SEQ ID
NO:
255.
In a specific embodiment, an antibody that binds to domains 3-4 of HER3
comprises a VH of
SEQ ID NO: 274 and VL of SEQ ID NO: 275. In a specific embodiment, an antibody
that
binds to domains 3-4 of HER3 comprises a VH of SEQ ID NO: 294 and VL of SEQ ID
NO:
295. In a specific embodiment, an antibody that binds to domains 3-4 of HER3
comprises a
VH of SEQ ID NO: 314 and VL of SEQ ID NO: 315. In a specific embodiment, an
antibody
that binds to domains 3-4 of HER3 comprises a VH of SEQ ID NO: 334 and VL of
SEQ ID
NO: 335. In a specific embodiment, an antibody that binds to domains 3-4 of
HER3
comprises a VH of SEQ ID NO: 354 and VL of SEQ ID NO: 355. In a specific
embodiment,
an antibody that binds to domains 3-4 of HER3 comprises a VH of SEQ ID NO: 374
and VL
of SEQ ID NO: 375. In a specific embodiment, an antibody that binds to domains
3-4 of
HER3 comprises a VH of SEQ ID NO: 394 and VL of SEQ ID NO: 395. In a specific
embodiment, an antibody that binds to domains 3-4 of HER3 comprises a VH of
SEQ ID NO:
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414 and VL of SEQ ID NO: 415. In a specific embodiment, an antibody that binds
to domains
3-4 of HER3 comprises a VH of SEQ ID NO: 434 and VL of SEQ ID NO: 435. In a
specific
embodiment, an antibody that binds to domains 3-4 of HER3 comprises a VH of
SEQ ID NO:
454 and VL of SEQ ID NO: 255. In a specific embodiment, an antibody that binds
to domains
3-4 of HER3 comprises a VH of SEQ ID NO: 474 and VL of SEQ ID NO: 475. In a
specific
embodiment, an antibody that binds to domains 3-4 of HER3 comprises a VH of
SEQ ID NO:
494 and VL of SEQ ID NO: 495. In a specific embodiment, an antibody that binds
to domains
3-4 of HER3 comprises a VH of SEQ ID NO: 514 and VL of SEQ ID NO: 515. In a
specific
embodiment, an antibody that binds to domains 3-4 of HER3 comprises a VH of
SEQ ID NO:
534 and VL of SEQ ID NO: 535. In a specific embodiment, an antibody that binds
to domains
3-4 of HER3 comprises a VH of SEQ ID NO: 554 and VL of SEQ ID NO: 555. In a
specific
embodiment, an antibody that binds to domains 3-4 of HER3 comprises a VH of
SEQ ID NO:
574 and VL of SEQ ID NO: 575. In a specific embodiment, an antibody that binds
to domains
3-4 of HER3 comprises a VH of SEQ ID NO: 594 and VL of SEQ ID NO: 595. In a
specific
embodiment, an antibody that binds to domains 3-4 of HER3 comprises a VH of
SEQ ID NO:
614 and VL of SEQ ID NO: 615. In a specific embodiment, an antibody that binds
to domains
3-4 of HER3 comprises a VH of SEQ ID NO: 634 and VL of SEQ ID NO: 635. In a
specific
embodiment, an antibody that binds to domains 3-4 of HER3 comprises a VH of
SEQ ID NO:
654 and VL of SEQ ID NO: 655. In a specific embodiment, an antibody that binds
to domains
3-4 of HER3 comprises a VH of SEQ ID NO: 674 and VL of SEQ ID NO: 675. In a
specific
embodiment, an antibody that binds to domains 3-4 of HER3 comprises a VH of
SEQ ID NO:
694 and VL of SEQ ID NO: 695.
In another aspect, the present invention provides HER3 antibodies that bind to
domain 3 that
comprise the heavy chain and light chain CDR1s, CDR2s and CDR3s as described
in Table 1,
or combinations thereof. The amino acid sequences of the VH CDR1s of the
antibodies are
shown in SEQ ID NOs: 2, 22, 42, 62, 82, 102, 122, 142, and 162. The amino acid
sequences
of the VH CDR2s of the antibodies and are shown in SEQ ID NOs: 3, 23, 43, 63,
83, 103,
123, 143, and 163. The amino acid sequences of the VH CDR3s of the antibodies
are shown
in SEQ ID NOs: 4, 24, 44, 64, 84, 104, 124, 144, and 164. The amino acid
sequences of the
VL CDR1s of the antibodies are shown in SEQ ID NOs: 8, 28, 48, 68, 88, 108,
128, 148, and
168. The amino acid sequences of the VL CDR2s of the antibodies are shown in
SEQ ID
NOs: 9, 29, 49, 69, 89, 109, 129, 149, and 169. The amino acid sequences of
the VL CDR3s
of the antibodies are shown in SEQ ID NOs: 10, 30, 50, 70, 90, 110, 130, 150,
and 170. The
CDR regions are delineated using the Kabat system (Kabat et at., (1991)
Sequences of
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Proteins of Immunological Interest, Fifth Edition, U.S. Department of Health
and Human
Services, NIH Publication No. 91-3242; Chothia et at., (1987) J. Mol. Biol.
196:901-917;
Chothia et at., (1989) Nature 342: 877-883; and Al-Lazikani et at., (1997) J.
Mol. Biol. 273,
927-948).
In a specific embodiment, an antibody that binds to domain 3 of HER3 comprises
a heavy
chain variable region CDR1 of SEQ ID NO: 142; a CDR2 of SEQ ID NO: 143; a CDR3
of
SEQ ID NO:144; a light chain variable region CDR1 of SEQ ID NO: 148; a CDR2 of
SEQ ID
NO: 149; and a CDR3 of SEQ ID NO: 150.
In a specific embodiment, an antibody that binds to domain 3 of HER3 comprises
a heavy
chain variable region CDR1 of SEQ ID NO: 162; a CDR2 of SEQ ID NO: 163; a CDR3
of
SEQ ID NO: 164; a light chain variable region CDR1 of SEQ ID NO: 168; a CDR2
of SEQ
ID NO: 169; and a CDR3 of SEQ ID NO: 170.
In another aspect, the present invention provides HER3 antibodies that bind to
domains 3-4
that comprise the heavy chain and light chain CDR1s, CDR2s and CDR3s as
described in
Table 2, or combinations thereof The amino acid sequences of the VH CDR1s of
the
antibodies are shown in SEQ ID NOs: 182, 202, 222, 242, 262, 282, 302, 322,
342, 362, 382,
402, 422, 442, 462, 482, 502, 522, 542, 562, 582, 602, 622, 642, 662, and 682.
The amino
acid sequences of the VH CDR2s of the antibodies and are shown in SEQ ID NOs:
183, 203,
223, 243, 263, 283, 303, 323, 343, 363, 383, 403, 423, 443, 463, 483, 503,
523, 543, 563, 583,
603, 623, 643, 663, and 683. The amino acid sequences of the VH CDR3s of the
antibodies
are shown in SEQ ID NOs: 184, 204, 224, 244, 264, 284, 304, 324, 344, 364,
384, 404, 424,
444, 464, 484, 504, 524, 544, 564, 584, 604, 624, 644, 664, and 684. The amino
acid
sequences of the VL CDR1s of the antibodies are shown in SEQ ID NOs: 188, 208,
228, 248,
268, 288, 308, 328, 348, 368, 388, 408, 428, 448, 468, 488, 508, 528, 548,
568, 588, 608, 628,
648, 668, and 688. The amino acid sequences of the VL CDR2s of the antibodies
are shown
in SEQ ID NOs: 189, 209, 229, 249, 269, 289, 309, 329, 349, 369, 389, 409,
429, 449, 469,
489, 509, 529, 549, 569, 589, 609, 629, 649, 669, and 689. The amino acid
sequences of the
VL CDR3s of the antibodies are shown in SEQ ID NOs: 190, 210, 230, 250, 270,
290, 310,
330, 350, 370, 390, 410, 430, 450, 470, 490, 510, 530, 550, 570, 590, 610,
630, 650, 670, and
690. The CDR regions are delineated using the Kabat system (Kabat et at.,
(1991) Sequences
of Proteins of Immunological Interest, Fifth Edition, U.S. Department of
Health and Human
Services, NIH Publication No. 91-3242; Chothia et at., (1987) J. Mol. Biol.
196:901-917;
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Chothia et at., (1989) Nature 342: 877-883; and Al-Lazikani et at., (1997) J.
Mol. Biol. 273,
927-948).
In a specific embodiment, an antibody that binds to domains 3-4 of HER3
comprises a heavy
chain variable region CDR1 of SEQ ID NO: 662; a CDR2 of SEQ ID NO: 663; a CDR3
of
SEQ ID NO: 664; a light chain variable region CDR1 of SEQ ID NO: 668; a CDR2
of SEQ
ID NO: 669; and a CDR3 of SEQ ID NO: 670.
In a specific embodiment, an antibody that binds to domains 3-4 of HER3
comprises a heavy
chain variable region CDR1 of SEQ ID NO: 682; a CDR2 of SEQ ID NO: 683; a CDR3
of
SEQ ID NO: 684; a light chain variable region CDR1 of SEQ ID NO: 688; a CDR2
of SEQ
ID NO: 689; and a CDR3 of SEQ ID NO: 690.
Other antibodies of the invention include amino acids that have been mutated,
yet have at
least 50%, 60%, 70%, 80%, 90%, 95%, 96%, 97%, 98% or 99% identity in the CDR
regions
with the CDR regions depicted in the sequences described in Table 1 or Table
2. In some
embodiments, it includes mutant amino acid sequences wherein no more than 1,
2, 3, 4 or 5
amino acids have been mutated in the CDR regions when compared with the CDR
regions
depicted in the sequence described Table 1 or Table 2, while still maintaining
their specificity
for the original antibody's epitope
Other antibodies of the invention include amino acids that have been mutated,
yet have at
least 50%, 60%, 70%, 80%, 90%, 95%, 96%, 97%, 98% or 99% identity in the
framework
regions with the framework regions depicted in the sequences described in
Table 1 or Table 2.
In some embodiments, it includes mutant amino acid sequences wherein no more
than 1, 2, 3,
4, 5, 6, or 7 amino acids have been mutated in the framework regions when
compared with
the framework regions depicted in the sequence described Table 1 or Table 2,
while still
maintaining their specificity for the original antibody's epitope. The present
invention also
provides nucleic acid sequences that encode VH, VL, the full length heavy
chain, and the full
length light chain of the antibodies that specifically bind to a HER3 protein
(e.g., human
and/or cynomologus HER3).
Other antibodies of the invention include those where the amino acids or
nucleic acids
encoding the amino acids have been mutated, yet have at least 50%, 60%, 70%,
80%, 90%,
95%, 96%, 97%, 98% or 99% identity to the sequences described in Table 1 or
Table 2. In
some embodiments, it include mutant amino acid sequences wherein no more than
1, 2, 3, 4 or
5 amino acids have been mutated in the variable regions when compared with the
variable
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regions depicted in the sequence described in Table 1 or Table 2, while
retaining substantially
the same therapeutic activity.
As used herein, a human antibody comprises heavy or light chain variable
regions or full
length heavy or light chains that are "the product of' or "derived from" a
particular germline
sequence if the variable regions or full length chains of the antibody are
obtained from a
system that uses human germline immunoglobulin genes. Such systems include
immunizing
a transgenic mouse carrying human immunoglobulin genes with the antigen of
interest or
screening a human immunoglobulin gene library displayed on phage with the
antigen of
interest. A human antibody that is "the product of' or "derived from" a human
germline
immunoglobulin sequence can be identified as such by comparing the amino acid
sequence of
the human antibody to the amino acid sequences of human germline
immunoglobulins and
selecting the human germline immunoglobulin sequence that is closest in
sequence (i.e.,
greatest % identity) to the sequence of the human antibody. A human antibody
that is "the
product of' or "derived from" a particular human germline immunoglobulin
sequence may
contain amino acid differences as compared to the germline sequence, due to,
for example,
naturally occurring somatic mutations or intentional introduction of site-
directed mutations.
However, in the VH or VL framework regions, a selected human antibody
typically is at least
90% identical in amino acids sequence to an amino acid sequence encoded by a
human
germline immunoglobulin gene and contains amino acid residues that identify
the human
antibody as being human when compared to the germline immunoglobulin amino
acid
sequences of other species (e.g., murine germline sequences). In certain
cases, a human
antibody may be at least 50%, 60%, 70%, 80%, 90%, 95%, 96%, 97%, 98% or 99%
identical
in amino acid sequence to the amino acid sequence encoded by the germline
immunoglobulin
gene. Typically, a recombinant human antibody will display no more than 10
amino acid
differences from the amino acid sequence encoded by the human germline
immunoglobulin
gene in the VH or VL framework regions. In certain cases, the human antibody
may display
no more than 5, or even no more than 4, 3, 2, or 1 amino acid difference from
the amino acid
sequence encoded by the germline immunoglobulin gene.
The antibodies disclosed herein can be derivatives of single chain antibodies,
diabodies,
domain antibodies, nanobodies, and unibodies. A "single-chain antibody" (scFv)
consists of a
single polypeptide chain comprising a VL domain linked to a VH domain, wherein
VL
domain and VH domain are paired to form a monovalent molecule. Single chain
antibody can
be prepared according to method known in the art (see, for example, Bird et
at., (1988)
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Science 242:423-426 and Huston et at., (1988) Proc. Natl. Acad. Sci. USA
85:5879-5883). A
"disbud" consists of two chains, each chain comprising a heavy chain variable
region
connected to a light chain variable region on the same polypeptide chain
connected by a short
peptide linker, wherein the two regions on the same chain do not pair with
each other but with
complementary domains on the other chain to form a bispecific molecule.
Methods of
preparing diabodies are known in the art (See, e.g., Holliger et at., (1993)
Proc. Natl. Acad.
Sci. USA 90:6444-6448, and Poljak et at., (1994) Structure 2:1121-1123).
Domain antibodies
(dAbs) are small functional binding units of antibodies, corresponding to the
variable regions
of either the heavy or light chains of antibodies. Domain antibodies are well
expressed in
bacterial, yeast, and mammalian cell systems. Further details of domain
antibodies and
methods of production thereof are known in the art (see, for example, U.S.
Pat. Nos.
6,291,158; 6,582,915; 6,593,081; 6,172,197; 6,696,245; European Patents
0368684 &
0616640; W005/035572, W004/101790, W004/081026, W004/058821, W004/003019 and
W003/002609. Nanobodies are derived from the heavy chains of an antibody. A
nanobody
typically comprises a single variable domain and two constant domains (CH2 and
CH3) and
retains antigen-binding capacity of the original antibody. Nanobodies can be
prepared by
methods known in the art (See e.g., U.S. Pat. No. 6,765,087, U.S. Pat. No.
6,838,254, WO
06/079372). Unibodies consist of one light chain and one heavy chain of a IgG4
antibody.
Unibodies may be made by the removal of the hinge region of IgG4 antibodies.
Further details
of unibodies and methods of preparing them may be found in W02007/059782.
Homologous antibodies
In yet another embodiment, the present invention provides an antibody or
fragment thereof
comprising amino acid sequences that are homologous to the sequences described
in Table 1
or Table 2, and said antibody binds to a HER3 protein (e.g., human and/or
cynomologus
HER3), and retains the desired functional properties of those antibodies
described in Table 1
or Table 2.
For example, the invention provides an isolated monoclonal antibody (or a
functional
fragment thereof) comprising a heavy chain variable region and a light chain
variable region,
wherein the heavy chain variable region comprises an amino acid sequence that
is at least
80%, 90%, 95%, 96%, 97%, 98% or 99% identical to an amino acid sequence
selected from
the group consisting of SEQ ID NOs: 14, 34, 54, 74, 94, 114, 134, 154, and
174; the light
chain variable region comprises an amino acid sequence that is at least 80%,
90%, 95%, 96%,
97%, 98% or 99% identical to an amino acid sequence selected from the group
consisting of
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SEQ ID NOs: 15, 35, 55, 75, 95, 115, 135, 155, and 175; wherein the antibody
binds to
domain 3 of HER3 (e.g., human and/or cynomologus HER3) and inhibits the
signaling
activity of HER3, which can be measured in a phosphorylation assay or other
measure of
HER signaling (e.g., phospo-HER3 assays, phospho-Akt assays, cell
proliferation, and ligand
blocking assays as described in the Examples). Also includes within the scope
of the
invention are variable heavy and light chain parental nucleotide sequences;
and full length
heavy and light chain sequences optimized for expression in a mammalian cell.
Other
antibodies of the invention include amino acids or nucleic acids that have
been mutated, yet
have at least 60, 70, 80, 90, 95, 98, or 99% percent identity to the sequences
described above.
In some embodiments, it include mutant amino acid sequences wherein no more
than 1, 2, 3, 4
or 5 amino acids have been mutated by amino acid deletion, insertion or
substitution in the
variable regions when compared with the variable regions depicted in the
sequence described
above.
For example, the invention provides an isolated monoclonal antibody (or a
functional
fragment thereof) comprising a heavy chain variable region and a light chain
variable region,
wherein the heavy chain variable region comprises an amino acid sequence that
is at least
80%, 90%, 95%, 96%, 97%, 98% or 99% identical to an amino acid sequence
selected from
the group consisting of SEQ ID NOs: 194, 214, 234, 254, 274, 294, 314, 334,
354, 374, 394,
414, 434, 454, 474, 494, 514, 534, 554, 574, 594, 614, 634, 654, 674, and 694;
the light chain
variable region comprises an amino acid sequence that is at least 80%, 90%,
95%, 96%, 97%,
98% or 99% identical to an amino acid sequence selected from the group
consisting of SEQ
ID NOs: 195, 215, 235, 255, 275, 295, 315, 335, 355, 375, 395, 415, 435, 455,
475, 495, 515,
535, 555, 575, 595, 615, 635, 655, 675, and 695; wherein the antibody binds to
domains 3-4
of HER3 (e.g., human and/or cynomologus HER3) and inhibits the signaling
activity of
HER3, which can be measured in a phosphorylation assay or other measure of HER
signaling
(e.g., phospo-HER3 assays, phospho-Akt assays, cell proliferation, and ligand
blocking assays
as described in the Examples). Also includes within the scope of the invention
are variable
heavy and light chain parental nucleotide sequences; and full length heavy and
light chain
sequences optimized for expression in a mammalian cell. Other antibodies of
the invention
include amino acids or nucleic acids that have been mutated, yet have at least
60, 70, 80, 90,
95, 98, or 99% percent identity to the sequences described above. In some
embodiments, it
include mutant amino acid sequences wherein no more than 1, 2, 3, 4 or 5 amino
acids have
been mutated by amino acid deletion, insertion or substitution in the variable
regions when
compared with the variable regions depicted in the sequence described above.
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In other embodiments, the VH and/or VL amino acid sequences may be 50%, 60%,
70%,
80%, 90%, 95%, 96%, 97%, 98% or 99% identical to the sequences set forth in
Table 1 or
Table 2. In other embodiments, the VH and/or VL amino acid sequences may be
identical
except an amino acid substitution in no more than 1,2,3,4 or 5 amino acid
position. An
antibody having VH and VL regions having high (i. e., 80% or greater) identity
to the VH and
VL regions of the antibodies described in Table 1 or Table 2 can be obtained
by mutagenesis
(e.g., site-directed or PCR-mediated mutagenesis), followed by testing of the
encoded altered
antibody for retained function using the functional assays described herein.
In other embodiments, the variable regions of heavy chain and/or light chain
nucleotide
sequences may be 60%, 70%, 80%, 90%, 95%, 96%, 97%, 98% or 99% identical to
the
sequences set forth above.
As used herein, "percent identity" between the two sequences is a function of
the number of
identical positions shared by the sequences (i.e.,% identity equals number of
identical
positions/total number of positions x 100), taking into account the number of
gaps, and the
length of each gap, which needs to be introduced for optimal alignment of the
two sequences.
The comparison of sequences and determination of percent identity between two
sequences
can be accomplished using a mathematical algorithm, as described in the non-
limiting
examples below.
Additionally or alternatively, the protein sequences of the present invention
can further be
used as a "query sequence" to perform a search against public databases to,
for example,
identifies related sequences. For example, such searches can be performed
using the BLAST
program (version 2.0) of Altschul et at., (1990) J.Mol. Biol. 215:403-10.
Antibodies with Conservative Modifications
In certain embodiments, an antibody of the invention has a heavy chain
variable region
comprising CDR1, CDR2, and CDR3 sequences and a light chain variable region
comprising
CDR1, CDR2, and CDR3 sequences, wherein one or more of these CDR sequences
have
specified amino acid sequences based on the antibodies described herein or
conservative
modifications thereof, and wherein the antibodies retain the desired
functional properties of
the HER3 antibodies of the invention.
Accordingly, the invention provides an isolated HER3 monoclonal antibody, or a
fragment
thereof that bind to domain 3 of HER3, consisting of a heavy chain variable
region
comprising CDR1, CDR2, and CDR3 sequences and a light chain variable region
comprising
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CDR1, CDR2, and CDR3 sequences, wherein: the heavy chain variable region CDR1
amino
acid sequences are selected from the group consisting of SEQ ID NOs: 2, 22,
42, 62, 82, 102,
122, 142, and 162, and conservative modifications thereof; the heavy chain
variable region
CDR2 amino acid sequences are selected from the group consisting of SEQ ID
NOs: 3, 23,
43, 63, 83, 103, 123, 143, and 163 and conservative modifications thereof; the
heavy chain
variable region CDR3 amino acid sequences are selected from the group
consisting of SEQ ID
NOs: 4, 24, 44, 64, 84, 104, 124, 144, and 164 and conservative modifications
thereof; the
light chain variable regions CDR1 amino acid sequences are selected from the
group
consisting of SEQ ID NOs: 8, 28, 48, 68, 88, 108, 128, 148, and 168 and
conservative
modifications thereof; the light chain variable regions CDR2 amino acid
sequences are
selected from the group consisting of SEQ ID NOs: 9, 29, 49, 69, 89, 109, 129,
149, and 169,
and conservative modifications thereof; the light chain variable regions of
CDR3 amino acid
sequences are selected from the group consisting of SEQ ID NOs: 10, 30, 50,
70, 90, 110,
130, 150, and 170, and conservative modifications thereof; the antibody or
fragment thereof
specifically binds to HER3, and inhibits HER3 activity by inhibiting a HER3
signaling
pathway, which can be measured in a phosphorylation assay or other measure of
HER
signaling (e.g., phospo-HER3 assays, phospho-Akt assays, cell proliferation,
and ligand
blocking assays as described in the Examples).
Accordingly, the invention provides an isolated HER3 monoclonal antibody, or a
fragment
thereof that bind to domains 3-4 of HER3, consisting of a heavy chain variable
region
comprising CDR1, CDR2, and CDR3 sequences and a light chain variable region
comprising
CDR1, CDR2, and CDR3 sequences, wherein: the heavy chain variable region CDR1
amino
acid sequences are selected from the group consisting of SEQ ID NOs: 182, 202,
222, 242,
262, 282, 302, 322, 342, 362, 382, 402, 422, 442, 462, 482, 502, 522, 542,
562, 582, 602, 622,
642, 662, and 682, and conservative modifications thereof; the heavy chain
variable region
CDR2 amino acid sequences are selected from the group consisting of SEQ ID
NOs: 183,
203, 223, 243, 263, 283, 303, 323, 343, 363, 383, 403, 423, 443, 463, 483,
503, 523, 543, 563,
583, 603, 623, 643, 663, and 683 and conservative modifications thereof; the
heavy chain
variable region CDR3 amino acid sequences are selected from the group
consisting of SEQ ID
NOs: 184, 204, 224, 244, 264, 284, 304, 324, 344, 364, 384, 404, 424, 444,
464, 484, 504,
524, 544, 564, 584, 604, 624, 644, 664, and 684 and conservative modifications
thereof; the
light chain variable regions CDR1 amino acid sequences are selected from the
group
consisting of SEQ ID NOs: 188, 208, 228, 248, 268, 288, 308, 328, 348, 368,
388, 408, 428,
448, 468, 488, 508, 528, 548, 568, 588, 608, 628, 648, 668, and 688 and
conservative
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modifications thereof; the light chain variable regions CDR2 amino acid
sequences are
selected from the group consisting of SEQ ID NOs: 189, 209, 229, 249, 269,
289, 309, 329,
349, 369, 389, 409, 429, 449, 469, 489, 509, 529, 549, 569, 589, 609, 629,
649, 669, and 689,
and conservative modifications thereof; the light chain variable regions of
CDR3 amino acid
sequences are selected from the group consisting of SEQ ID NOs: 190, 210, 230,
250, 270,
290, 310, 330, 350, 370, 390, 410, 430, 450, 470, 490, 510, 530, 550, 570,
590, 610, 630, 650,
670, and 690, and conservative modifications thereof; the antibody or fragment
thereof
specifically binds to HER3, and inhibits HER3 activity by inhibiting a HER3
signaling
pathway, which can be measured in a phosphorylation assay or other measure of
HER
signaling (e.g., phospo-HER3 assays, phospho-Akt assays, cell proliferation,
and ligand
blocking assays as described in the Examples).
Antibodies That Bind to the Same Epitope
The present invention provides antibodies that interacts with (e.g., by
binding, steric
hindrance, stabilizing/destabilizing, spatial distribution) the same epitope
as do the HER3
antibodies described in Table 1 or Table 2. Additional antibodies can
therefore be identified
based on their ability to cross-compete (e.g., to competitively inhibit the
binding of, in a
statistically significant manner) with other antibodies of the invention in
HER3 binding
assays. The ability of a test antibody to inhibit the binding of antibodies of
the present
invention to a HER3 protein (e.g., human and/or cynomologus HER3) demonstrates
that the
test antibody can compete with that antibody for binding to HER3; such an
antibody may,
according to non-limiting theory, bind to the same or a related (e.g., a
structurally similar or
spatially proximal) epitope on the HER3 protein as the antibody with which it
competes. In a
certain embodiment, the antibody that binds to the same epitope on HER3 as the
antibodies of
the present invention is a human monoclonal antibody. Such human monoclonal
antibodies
can be prepared and isolated as described herein.
In one embodiment, the antibody or fragments thereof binds to domain 3 of HER3
and
inhibits both ligand dependent and ligand-independent HER3 signal
transduction. In one
embodiment, the antibody or fragments thereof bind to domains 3-4 of HER3 and
inhibits
both ligand dependent and ligand-independent HER3 signal transduction.
The antibodies of the invention or fragments thereof inhibit both ligand
dependent and
independent activation of HER3 without preventing ligand binding. This is
considered
advantageous for the following reasons:
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(i) The therapeutic antibody would have clinical utility in a broad spectrum
of tumors than an
antibody which targeted a single mechanism of HER3 activation (i.e. ligand
dependent or
ligand independent) since distinct tumor types are driven by each mechanism.
(ii) The therapeutic antibody would be efficacious in tumor types where both
mechanisms of
HER3 activation are simultaneously involved. An antibody targeting a single
mechanism of
HER3 activation (i.e. ligand dependent or ligand independent) would display
little or no
efficacy in these tumor types
(iii) The efficacy of an antibody which inhibits ligand dependent activation
of HER3 without
preventing ligand binding would be less likely to be adversely affected by
increasing
concentrations of ligand. This would translate to either increased efficacy in
a tumor type
driven by very high concentrations of HER3 ligand or a reduced drug resistance
liability
where resistance is mediated by up-regulation of HER3 ligands.
(iv) An antibody which inhibits HER3 activation by stabilizing the inactive
form would be
less prone to drug resistance driven by alternative mechanisms of HER3
activation.
Consequently, the antibodies of the invention may be used to treat conditions
where existing
therapeutic antibodies are clinically ineffective.
Engineered and Modified Antibodies
An antibody of the invention further can be prepared using an antibody having
one or more of
the VH and/or VL sequences shown herein as starting material to engineer a
modified
antibody, which modified antibody may have altered properties from the
starting antibody.
An antibody can be engineered by modifying one or more residues within one or
both variable
regions (i. e., VH and/or VL), for example within one or more CDR regions
and/or within one
or more framework regions. Additionally or alternatively, an antibody can be
engineered by
modifying residues within the constant region(s), for example to alter the
effector function(s)
of the antibody.
One type of variable region engineering that can be performed is CDR grafting.
Antibodies
interact with target antigens predominantly through amino acid residues that
are located in the
six heavy and light chain complementarity determining regions (CDRs). For this
reason, the
amino acid sequences within CDRs are more diverse between individual
antibodies than
sequences outside of CDRs. Because CDR sequences are responsible for most
antibody-
antigen interactions, it is possible to express recombinant antibodies that
mimic the properties
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of specific naturally occurring antibodies by constructing expression vectors
that include CDR
sequences from the specific naturally occurring antibody grafted onto
framework sequences
from a different antibody with different properties (see, e.g., Riechmann et
at., (1998) Nature
332:323-327; Jones et at., (1986) Nature 321:522-525; Queen et at., (1989)
Proc. Natl. Acad.,
U.S.A. 86:10029-10033; U.S. Patent No. 5,225,539 to Winter, and U.S. Patent
Nos.
5,530,101; 5,585,089; 5,693,762 and 6,180,370 to Queen et al.)
Accordingly, another embodiment of the invention pertains to an isolated HER3
monoclonal
antibody, or fragment thereof that binds to domain 3 of HER3, comprising a
heavy chain
variable region comprising CDR1 sequences having an amino acid sequence
selected from the
group consisting of SEQ ID NOs: 2, 22, 42, 62, 82, 102, 122, 142, and 162;
CDR2 sequences
having an amino acid sequence selected from the group consisting of SEQ ID
NOs: 33, 23,
43, 63, 83, 103, 123, 143, and 163; CDR3 sequences having an amino acid
sequence selected
from the group consisting of SEQ ID NOs: 4, 24, 44, 64, 84, 104, 124, 144, and
164,
respectively; and a light chain variable region having CDR1 sequences having
an amino acid
sequence selected from the group consisting of SEQ ID NOs: 8, 28, 48, 68, 88,
108, 128, 148,
and 168; CDR2 sequences having an amino acid sequence selected from the group
consisting
of SEQ ID NOs: 9, 29, 49, 69, 89, 109, 129, 149, and 169; and CDR3 sequences
consisting of
an amino acid sequence selected from the group consisting of SEQ ID NOs: 10,
30, 50, 70,
90, 110, 130, 150, and 170, respectively.
Accordingly, another embodiment of the invention pertains to an isolated HER3
monoclonal
antibody, or fragment thereof that bind to domains 3-4 of HER3, comprising a
heavy chain
variable region comprising CDR1 sequences having an amino acid sequence
selected from the
group consisting of SEQ ID NOs: 182, 202, 222, 242, 262, 282, 302, 322, 342,
362, 382, 402,
422, 442, 462, 482, 502, 522, 542, 562, 582, 602, 622, 642, 662, and 682; CDR2
sequences
having an amino acid sequence selected from the group consisting of SEQ ID
NOs: 183, 203,
223, 243, 263, 283, 303, 323, 343, 363, 383, 403, 423, 443, 463, 483, 503,
523, 543, 563, 583,
603, 623, 643, 663, and 683; CDR3 sequences having an amino acid sequence
selected from
the group consisting of SEQ ID NOs: 184, 204, 224, 244, 264, 284, 304, 324,
344, 364, 384,
404, 424, 444, 464, 484, 504, 524, 544, 564, 584, 604, 624, 644, 664, and 684,
respectively;
and a light chain variable region having CDR1 sequences having an amino acid
sequence
selected from the group consisting of SEQ ID NOs: 188, 208, 228, 248, 268,
288, 308, 328,
348, 368, 388, 408, 428, 448, 468, 488, 508, 528, 548, 568, 588, 608, 628,
648, 668, and 688;
CDR2 sequences having an amino acid sequence selected from the group
consisting of SEQ
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ID NOs: 189, 209, 229, 249, 269, 289, 309, 329, 349, 369, 389, 409, 429, 449,
469, 489, 509,
529, 549, 569, 589, 609, 629, 649, 669, and 689; and CDR3 sequences consisting
of an amino
acid sequence selected from the group consisting of SEQ ID NOs: 190, 210, 230,
250, 270,
290, 310, 330, 350, 370, 390, 410, 430, 450, 470, 490, 510, 530, 550, 570,
590, 610, 630, 650,
670, and 690, respectively.
Such antibodies contain the VH and VL CDR sequences of monoclonal antibodies,
yet may
contain different framework sequences from these antibodies. Such framework
sequences can
be obtained from public DNA databases or published references that include
germline
antibody gene sequences. For example, germline DNA sequences for human heavy
and light
chain variable region genes can be found in the "Vbase" human germline
sequence database
(available on the Internet at www.mrc- cpe.cam.ac.uk/vbase), as well as in
Kabat et at., (1991)
Sequences of Proteins of Immunological Interest, Fifth Edition, U.S.
Department of Health
and Human Services, NIH Publication No. 91-3242; Chothia et at., (1987) J.
Mol. Biol.
196:901-917; Chothia et at., (1989) Nature 342:877-883; and Al-Lazikani et
at., (1997) J.
Mol. Biol. 273:927-948; Tomlinson et at., (1992) J. fol. Biol. 227:776-798;
and Cox et at.,
(1994) Eur. J Immunol. 24:827-836; the contents of each of which are expressly
incorporated
herein by reference.
An example of framework sequences for use in the antibodies of the invention
are those that
are structurally similar to the framework sequences used by selected
antibodies of the
invention, e.g., consensus sequences and/or framework sequences used by
monoclonal
antibodies of the invention. The VH CDR1, 2 and 3 sequences, and the VL CDR1,
2 and 3
sequences, can be grafted onto framework regions that have the identical
sequence as that
found in the germline immunoglobulin gene from which the framework sequence
derive, or
the CDR sequences can be grafted onto framework regions that contain one or
more mutations
as compared to the germline sequences. For example, it has been found that in
certain
instances it is beneficial to mutate residues within the framework regions to
maintain or
enhance the antigen binding ability of the antibody (see e.g., U.S. Patent
Nos. 5,530,101;
5,585,089; 5,693,762 and 6,180,370 to Queen et al).
Another type of variable region modification is to mutate amino acid residues
within the VH
and/or VL CDR1, CDR2 and/or CDR3 regions to thereby improve one or more
binding
properties (e.g., affinity) of the antibody of interest, known as "affinity
maturation." Site-
directed mutagenesis or PCR-mediated mutagenesis can be performed to introduce
the
mutation(s) and the effect on antibody binding, or other functional property
of interest, can be
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evaluated in in vitro or in vivo assays as described herein and provided in
the Examples.
Conservative modifications (as discussed above) can be introduced. The
mutations may be
amino acid substitutions, additions or deletions. Moreover, typically no more
than one, two,
three, four or five residues within a CDR region are altered.
Accordingly, in another embodiment, the invention provides isolated HER3
monoclonal
antibodies, or fragment thereof that bind to domain 3 of HER3, consisting of a
heavy chain
variable region having: a VH CDR1 region consisting of an amino acid sequence
selected
from the group having SEQ ID NOs: 22, 22, 42, 62, 82, 102, 122, 142, and 162
or an amino
acid sequence having one, two, three, four or five amino acid substitutions,
deletions or
additions as compared to SEQ ID NOs: 2, 22, 42, 62, 82, 102, 122, 142, and
162; a VH CDR2
region having an amino acid sequence selected from the group consisting of SEQ
ID NOs: 3,
23, 43, 63, 83, 103, 123, 143, and 163or an amino acid sequence having one,
two, three, four
or five amino acid substitutions, deletions or additions as compared to SEQ ID
NOs: 3, 23, 43,
63, 83, 103, 123, 143, and 163; a VH CDR3 region having an amino acid sequence
selected
from the group consisting of SEQ ID NOs: 4, 24, 44, 64, 84, 104, 124, 144, and
164, or an
amino acid sequence having one, two, three, four or five amino acid
substitutions, deletions or
additions as compared to SEQ ID NOs: 4, 24, 44, 64, 84, 104, 124, 144, and
164, and 370; a
VL CDR1 region having an amino acid sequence selected from the group
consisting of SEQ
ID NOs: 8, 28, 48, 68, 88, 108, 128, 148, and 168, or an amino acid sequence
having one,
two, three, four or five amino acid substitutions, deletions or additions as
compared to SEQ
ID NOs: 8, 28, 48, 68, 88, 108, 128, 148, and 168; a VL CDR2 region having an
amino acid
sequence selected from the group consisting of SEQ ID NOs: 9, 29, 49, 69, 89,
109, 129, 149,
and 169, or an amino acid sequence having one, two, three, four or five amino
acid
substitutions, deletions or additions as compared to SEQ ID NOs: 9, 29, 49,
69, 89, 109, 129,
149, and 169; and a VL CDR3 region having an amino acid sequence selected from
the group
consisting of SEQ ID NOs: 10, 30, 50, 70, 90, 110, 130, 150, and 170, and 373,
or an amino
acid sequence having one, two, three, four or five amino acid substitutions,
deletions or
additions as compared to SEQ ID NOs: 10, 30, 50, 70, 90, 110, 130, 150, and
170.
Accordingly, in another embodiment, the invention provides isolated HER3
monoclonal
antibodies, or fragment thereof bind to domains 3-4 of HER3, consisting of a
heavy chain
variable region having: a VH CDR1 region consisting of an amino acid sequence
selected
from the group having SEQ ID NOs: 182, 202, 222, 242, 262, 282, 302, 322, 342,
362, 382,
402, 422, 442, 462, 482, 502, 522, 542, 562, 582, 602, 622, 642, 662, and 682
or an amino
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acid sequence having one, two, three, four or five amino acid substitutions,
deletions or
additions as compared to SEQ ID NOs: 182, 202, 222, 242, 262, 282, 302, 322,
342, 362, 382,
402, 422, 442, 462, 482, 502, 522, 542, 562, 582, 602, 622, 642, 662, and 682;
a VH CDR2
region having an amino acid sequence selected from the group consisting of SEQ
ID NOs:
183, 203, 223, 243, 263, 283, 303, 323, 343, 363, 383, 403, 423, 443, 463,
483, 503, 523, 543,
563, 583, 603, 623, 643, 663, and 683 or an amino acid sequence having one,
two, three, four
or five amino acid substitutions, deletions or additions as compared to SEQ ID
NOs: 183, 203,
223, 243, 263, 283, 303, 323, 343, 363, 383, 403, 423, 443, 463, 483, 503,
523, 543, 563, 583,
603, 623, 643, 663, and 683; a VH CDR3 region having an amino acid sequence
selected
from the group consisting of SEQ ID NOs: 184, 204, 224, 244, 264, 284, 304,
324, 344, 364,
384, 404, 424, 444, 464, 484, 504, 524, 544, 564, 584, 604, 624, 644, 664, and
684, or an
amino acid sequence having one, two, three, four or five amino acid
substitutions, deletions or
additions as compared to SEQ ID NOs: 184, 204, 224, 244, 264, 284, 304, 324,
344, 364, 384,
404, 424, 444, 464, 484, 504, 524, 544, 564, 584, 604, 624, 644, 664, and 684;
a VL CDR1
region having an amino acid sequence selected from the group consisting of SEQ
ID NOs:
188, 208, 228, 248, 268, 288, 308, 328, 348, 368, 388, 408, 428, 448, 468,
488, 508, 528, 548,
568, 588, 608, 628, 648, 668, and 688, or an amino acid sequence having one,
two, three, four
or five amino acid substitutions, deletions or additions as compared to SEQ ID
NOs: 188, 208,
228, 248, 268, 288, 308, 328, 348, 368, 388, 408, 428, 448, 468, 488, 508,
528, 548, 568, 588,
608, 628, 648, 668, and 688; a VL CDR2 region having an amino acid sequence
selected from
the group consisting of SEQ ID NOs: 189, 209, 229, 249, 269, 289, 309, 329,
349, 369, 389,
409, 429, 449, 469, 489, 509, 529, 549, 569, 589, 609, 629, 649, 669, and 689,
or an amino
acid sequence having one, two, three, four or five amino acid substitutions,
deletions or
additions as compared to SEQ ID NOs: 189, 209, 229, 249, 269, 289, 309, 329,
349, 369, 389,
409, 429, 449, 469, 489, 509, 529, 549, 569, 589, 609, 629, 649, 669, and 689;
and a VL
CDR3 region having an amino acid sequence selected from the group consisting
of SEQ ID
NOs: 190, 210, 230, 250, 270, 290, 310, 330, 350, 370, 390, 410, 430, 450,
470, 490, 510,
530, 550, 570, 590, 610, 630, 650, 670, and 690, or an amino acid sequence
having one, two,
three, four or five amino acid substitutions, deletions or additions as
compared to SEQ ID
NOs: 190, 210, 230, 250, 270, 290, 310, 330, 350, 370, 390, 410, 430, 450,
470, 490, 510,
530, 550, 570, 590, 610, 630, 650, 670, and 690.
Grafting Antibody Fragments Into Alternative Frameworks or Scaffolds
A wide variety of antibody/ immunoglobulin frameworks or scaffolds can be
employed so
long as the resulting polypeptide includes at least one binding region which
specifically binds
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to HER3. Such frameworks or scaffolds include the 5 main idiotypes of human
immunoglobulins, or fragments thereof, and include immunoglobulins of other
animal
species, preferably having humanized aspects. Novel frameworks, scaffolds and
fragments
continue to be discovered and developed by those skilled in the art.
In one aspect, the invention pertains to generating non-immunoglobulin based
antibodies
using non- immunoglobulin scaffolds onto which CDRs of the invention can be
grafted.
Known or future non-immunoglobulin frameworks and scaffolds may be employed,
as long as
they comprise a binding region specific for the target HER3 protein (e.g.,
human and/or
cynomologus HER3). Known non-immunoglobulin frameworks or scaffolds include,
but are
not limited to, fibronectin (Compound Therapeutics, Inc., Waltham, MA),
ankyrin
(Molecular Partners AG, Zurich, Switzerland), domain antibodies (Domantis,
Ltd.,
Cambridge, MA, and Ablynx nv, Zwijnaarde, Belgium), lipocalin (Pieris
Proteolab AG,
Freising, Germany), small modular immuno-pharmaceuticals (Trubion
Pharmaceuticals Inc.,
Seattle, WA), maxybodies (Avidia, Inc., Mountain View, CA), Protein A
(Affibody AG,
Sweden), and affilin (gamma-crystallin or ubiquitin) (Scil Proteins GmbH,
Halle, Germany).
The fibronectin scaffolds are based on fibronectin type III domain (e.g., the
tenth module of
the fibronectin type III (10 Fn3 domain)). The fibronectin type III domain has
7 or 8 beta
strands which are distributed between two beta sheets, which themselves pack
against each
other to form the core of the protein, and further containing loops (analogous
to CDRs) which
connect the beta strands to each other and are solvent exposed. There are at
least three such
loops at each edge of the beta sheet sandwich, where the edge is the boundary
of the protein
perpendicular to the direction of the beta strands (see US 6,818,418). These
fibronectin-based
scaffolds are not an immunoglobulin, although the overall fold is closely
related to that of the
smallest functional antibody fragment, the variable region of the heavy chain,
which
comprises the entire antigen recognition unit in camel and llama IgG. Because
of this
structure, the non-immunoglobulin antibody mimics antigen binding properties
that are
similar in nature and affinity to those of antibodies. These scaffolds can be
used in a loop
randomization and shuffling strategy in vitro that is similar to the process
of affinity
maturation of antibodies in vivo. These fibronectin-based molecules can be
used as scaffolds
where the loop regions of the molecule can be replaced with CDRs of the
invention using
standard cloning techniques.
The ankyrin technology is based on using proteins with ankyrin derived repeat
modules as
scaffolds for bearing variable regions which can be used for binding to
different targets. The
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ankyrin repeat module is a 33 amino acid polypeptide consisting of two anti-
parallel a-helices
and a 13-turn. Binding of the variable regions is mostly optimized by using
ribosome display.
Avimers are derived from natural A-domain containing protein such as HER3.
These
domains are used by nature for protein-protein interactions and in human over
250 proteins
are structurally based on A-domains. Avimers consist of a number of different
"A-domain"
monomers (2-10) linked via amino acid linkers. Avimers can be created that can
bind to the
target antigen using the methodology described in, for example, U.S. Patent
Application
Publication Nos. 20040175756; 20050053973; 20050048512; and 20060008844.
Affibody affinity ligands are small, simple proteins composed of a three-helix
bundle based
on the scaffold of one of the IgG-binding domains of Protein A. Protein A is a
surface protein
from the bacterium Staphylococcus aureus. This scaffold domain consists of 58
amino acids,
13 of which are randomized to generate affibody libraries with a large number
of ligand
variants (See e.g., US 5,831,012). Affibody molecules mimic antibodies, they
have a
molecular weight of 6 kDa, compared to the molecular weight of antibodies,
which is 150
kDa. In spite of its small size, the binding site of affibody molecules is
similar to that of an
antibody.
Anticalins are products developed by the company Pieris ProteoLab AG. They are
derived
from lipocalins, a widespread group of small and robust proteins that are
usually involved in
the physiological transport or storage of chemically sensitive or insoluble
compounds.
Several natural lipocalins occur in human tissues or body liquids. The protein
architecture is
reminiscent of immunoglobulins, with hypervariable loops on top of a rigid
framework.
However, in contrast with antibodies or their recombinant fragments,
lipocalins are composed
of a single polypeptide chain with 160 to 180 amino acid residues, being just
marginally
bigger than a single immunoglobulin domain. The set of four loops, which makes
up the
binding pocket, shows pronounced structural plasticity and tolerates a variety
of side chains.
The binding site can thus be reshaped in a proprietary process in order to
recognize prescribed
target molecules of different shape with high affinity and specificity. One
protein of lipocalin
family, the bilin-binding protein (BBP) of Pieris Brassicae has been used to
develop anticalins
by mutagenizing the set of four loops. One example of a patent application
describing
anticalins is in PCT Publication No.WO 199916873.
Affilin molecules are small non-immunoglobulin proteins which are designed for
specific
affinities towards proteins and small molecules. New affilin molecules can be
very quickly
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selected from two libraries, each of which is based on a different human
derived scaffold
protein. Affilin molecules do not show any structural homology to
immunoglobulin proteins.
Currently, two affilin scaffolds are employed, one of which is gamma
crystalline, a human
structural eye lens protein and the other is "ubiquitin" superfamily proteins.
Both human
scaffolds are very small, show high temperature stability and are almost
resistant to pH
changes and denaturing agents. This high stability is mainly due to the
expanded beta sheet
structure of the proteins. Examples of gamma crystalline derived proteins are
described in
W0200104144 and examples of "ubiquitin-like" proteins are described in
W02004106368.
Protein epitope mimetics (PEM) are medium-sized, cyclic, peptide-like
molecules (MW 1-
2kDa) mimicking beta-hairpin secondary structures of proteins, the major
secondary structure
involved in protein-protein interactions.
In some embodiments, the Fabs are converted to silent IgG1 format by changing
the Fc
region. For example, antibodies in Table 1 or Table 2 can be converted to IgG
format.
Human or humanized antibodies
The present invention provides fully human antibodies that specifically bind
to a HER3
protein (e.g., human and/or cynomologus/ mouse/rat HER3). Compared to the
chimeric or
humanized antibodies, the human HER3 antibodies or fragments thereof, have
further reduced
antigenicity when administered to human subjects.
Human HER3 antibodies or fragments thereof can be generated using methods that
are known
in the art. For example, the humaneering technology used to converting non-
human
antibodies into engineered human antibodies. U.S. Patent Publication No.
20050008625
describes an in vivo method for replacing a nonhuman antibody variable region
with a human
variable region in an antibody while maintaining the same or providing better
binding
characteristics relative to that of the nonhuman antibody. The method relies
on epitope
guided replacement of variable regions of a non-human reference antibody with
a fully human
antibody. The resulting human antibody is generally unrelated structurally to
the reference
nonhuman antibody, but binds to the same epitope on the same antigen as the
reference
antibody. Briefly, the serial epitope-guided complementarity replacement
approach is enabled
by setting up a competition in cells between a "competitor" and a library of
diverse hybrids of
the reference antibody ("test antibodies") for binding to limiting amounts of
antigen in the
presence of a reporter system which responds to the binding of test antibody
to antigen. The
competitor can be the reference antibody or derivative thereof such as a
single-chain Fv
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fragment. The competitor can also be a natural or artificial ligand of the
antigen which binds
to the same epitope as the reference antibody. The only requirements of the
competitor are
that it binds to the same epitope as the reference antibody, and that it
competes with the
reference antibody for antigen binding. The test antibodies have one antigen-
binding V-
region in common from the nonhuman reference antibody, and the other V-region
selected at
random from a diverse source such as a repertoire library of human antibodies.
The common
V-region from the reference antibody serves as a guide, positioning the test
antibodies on the
same epitope on the antigen, and in the same orientation, so that selection is
biased toward the
highest antigen-binding fidelity to the reference antibody.
Many types of reporter system can be used to detect desired interactions
between test
antibodies and antigen. For example, complementing reporter fragments may be
linked to
antigen and test antibody, respectively, so that reporter activation by
fragment
complementation only occurs when the test antibody binds to the antigen. When
the test
antibody- and antigen-reporter fragment fusions are co-expressed with a
competitor, reporter
activation becomes dependent on the ability of the test antibody to compete
with the
competitor, which is proportional to the affinity of the test antibody for the
antigen. Other
reporter systems that can be used include the reactivator of an auto-inhibited
reporter
reactivation system (RAIR) as disclosed in U.S. Patent Application Ser. No.
10/208,730
(Publication No. 20030198971), or competitive activation system disclosed in
U.S. Patent
Application Ser. No. 10/076,845 (Publication No. 20030157579).
With the serial epitope-guided complementarity replacement system, selection
is made to
identify cells expresses a single test antibody along with the competitor,
antigen, and reporter
components. In these cells, each test antibody competes one-on-one with the
competitor for
binding to a limiting amount of antigen. Activity of the reporter is
proportional to the amount
of antigen bound to the test antibody, which in turn is proportional to the
affinity of the test
antibody for the antigen and the stability of the test antibody. Test
antibodies are initially
selected on the basis of their activity relative to that of the reference
antibody when expressed
as the test antibody. The result of the first round of selection is a set of
"hybrid" antibodies,
each of which is comprised of the same non-human V-region from the reference
antibody and
a human V-region from the library, and each of which binds to the same epitope
on the
antigen as the reference antibody. One of more of the hybrid antibodies
selected in the first
round will have an affinity for the antigen comparable to or higher than that
of the reference
antibody.
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In the second V-region replacement step, the human V-regions selected in the
first step are
used as guide for the selection of human replacements for the remaining non-
human reference
antibody V-region with a diverse library of cognate human V-regions. The
hybrid antibodies
selected in the first round may also be used as competitors for the second
round of selection.
The result of the second round of selection is a set of fully human antibodies
which differ
structurally from the reference antibody, but which compete with the reference
antibody for
binding to the same antigen. Some of the selected human antibodies bind to the
same epitope
on the same antigen as the reference antibody. Among these selected human
antibodies, one
or more binds to the same epitope with an affinity which is comparable to or
higher than that
of the reference antibody.
Using one of the mouse or chimeric HER3 antibodies or fragments thereof
described above as
the reference antibody, this method can be readily employed to generate human
antibodies
that bind to human HER3 with the same binding specificity and the same or
better binding
affinity. In addition, such human HER3 antibodies or fragments thereof can
also be
commercially obtained from companies which customarily produce human
antibodies, e.g.,
KaloBios, Inc. (Mountain View, CA).
Camelid antibodies
Antibody proteins obtained from members of the camel and dromedary (Camelus
bactrianus
and Calelus dromaderius) family including new world members such as llama
species (Lama
paccos, Lama glama and Lama vicugna) have been characterized with respect to
size,
structural complexity and antigenicity for human subjects. Certain IgG
antibodies from this
family of mammals as found in nature lack light chains, and are thus
structurally distinct from
the typical four chain quaternary structure having two heavy and two light
chains, for
antibodies from other animals. See PCT/EP93/02214 (WO 94/04678 published 3
March
1994).
A region of the camelid antibody which is the small single variable domain
identified as VHH
can be obtained by genetic engineering to yield a small protein having high
affinity for a
target, resulting in a low molecular weight antibody-derived protein known as
a "camelid
nanobody". See U.S. patent number 5,759,808 issued June 2, 1998; see also
Stijlemans et at.,
(2004) J Biol Chem 279:1256-1261; Dumoulin et at., (2003) Nature 424:783-788;
Pleschberger et at., (2003) Bioconjugate Chem 14:440-448; Cortez-Retamozo et
at., (2002)
Int J Cancer 89:456-62; and Lauwereys et at., (1998) EMBO J 17:3512-3520.
Engineered
libraries of camelid antibodies and antibody fragments are commercially
available, for
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example, from Ablynx, Ghent, Belgium. (e.g., US20060115470; Domantis
(US20070065440,
US20090148434). As with other antibodies of non-human origin, an amino acid
sequence of a
camelid antibody can be altered recombinantly to obtain a sequence that more
closely
resembles a human sequence, i.e., the nanobody can be "humanized". Thus the
natural low
antigenicity of camelid antibodies to humans can be further reduced.
The camelid nanobody has a molecular weight approximately one-tenth that of a
human IgG
molecule, and the protein has a physical diameter of only a few nanometers.
One
consequence of the small size is the ability of camelid nanobodies to bind to
antigenic sites
that are functionally invisible to larger antibody proteins, i.e., camelid
nanobodies are useful
as reagents detect antigens that are otherwise cryptic using classical
immunological
techniques, and as possible therapeutic agents. Thus yet another consequence
of small size is
that a camelid nanobody can inhibit as a result of binding to a specific site
in a groove or
narrow cleft of a target protein, and hence can serve in a capacity that more
closely resembles
the function of a classical low molecular weight drug than that of a classical
antibody.
The low molecular weight and compact size further result in camelid nanobodies
being
extremely thermostable, stable to extreme pH and to proteolytic digestion, and
poorly
antigenic. Another consequence is that camelid nanobodies readily move from
the circulatory
system into tissues, and even cross the blood-brain barrier and can treat
disorders that affect
nervous tissue. Nanobodies can further facilitated drug transport across the
blood brain
barrier. See U.S. patent application 20040161738 published August 19, 2004.
These features
combined with the low antigenicity to humans indicate great therapeutic
potential. Further,
these molecules can be fully expressed in prokaryotic cells such as E. coli
and are expressed
as fusion proteins with bacteriophage and are functional.
Accordingly, a feature of the present invention is a camelid antibody or
nanobody having high
affinity for HER3. In certain embodiments herein, the camelid antibody or
nanobody is
naturally produced in the camelid animal, i.e., is produced by the camelid
following
immunization with HER3 or a peptide fragment thereof, using techniques
described herein for
other antibodies. Alternatively, the HER3-binding camelid nanobody is
engineered, i.e.,
produced by selection for example from a library of phage displaying
appropriately
mutagenized camelid nanobody proteins using panning procedures with HER3 as a
target as
described in the examples herein. Engineered nanobodies can further be
customized by
genetic engineering to have a half life in a recipient subject of from 45
minutes to two weeks.
In a specific embodiment, the camelid antibody or nanobody is obtained by
grafting the CDRs
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sequences of the heavy or light chain of the human antibodies of the invention
into nanobody
or single domain antibody framework sequences, as described for example in
PCT/EP93/02214. In one embodiment, the camelid antibody or nanobody binds to
at least
amino acids residue in domain 3 of HER3 selected from amino acid residues: 335-
342, 362-
376, 398,400, 424-428, 431, 433-434 and 455 (within domain 3), or a subset
thereof. In one
embodiment, the camelid antibody or nanobody binds to at least amino acids
residue in
domain 3 of HER3 selected from amino acid residues: 571, 582-584, 596-597, 600-
602, 609-
615 (of domain 4), or a subset thereof
Bispecific Molecules and Multivalent Antibodies
In another aspect, the present invention features biparatopic, bispecific or
multispecific
molecules comprising an antibody or a fragment thereof that binds to a non-
linear or
conformational epitope within domain 3 of HER3. In another aspect, the
biparatopic,
bispecific or multispecific molecules comprise an antibody or a fragment
thereof that binds to
an epitope within domain 4 of HER3. The antibody or fragment thereof can be
derivatized or
linked to another functional molecule, e.g., another peptide or protein (e.g.,
another antibody
or ligand for a receptor) to generate a bispecific molecule that binds to at
least two different
binding sites or target molecules. The antibody or fragment thereof may in
fact be derivatized
or linked to more than one other functional molecule to generate biparatopic
or multi-specific
molecules that bind to more than two different binding sites and/or target
molecules; such
biparatopic or multi-specific molecules. To create a bispecific molecule, an
antibody or
fragment thereof can be functionally linked (e.g., by chemical coupling,
genetic fusion, non-
covalent association or otherwise) to one or more other binding molecules,
such as another
antibody, antibody fragment, peptide or binding mimetic, such that a
bispecific molecule
results.
Further clinical benefits may be provided by the binding of two or more
antigens within one
antibody (Coloma et at., (1997); Merchant et at., (1998); Alt et at., (1999);
Zuo et at., (2000);
Lu et at., (2004); Lu et at., (2005); Marvin et at., (2005); Marvin et at.,
(2006); Shen et at.,
(2007); Wu et at., (2007); Dimasi et at., (2009); Michaelson et at., (2009)).
(Morrison et at.,
(1997) Nature Biotech. 15:159-163; Alt et at. (1999) FEBS Letters 454:90-94;
Zuo et at.,
(2000) Protein Engineering 13:361-367; Lu et at., (2004) JBC 279:2856-2865; Lu
et at.,
(2005) JBC 280:19665-19672; Marvin et at., (2005) Acta Pharmacologica Sinica
26:649-
658; Marvin et al., (2006) Curr Opin Drug Disc Develop 9:184-193; Shen et al.,
(2007) J
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Immun Methods 218:65-74; Wu et at., (2007) Nat Biotechnol. 11:1290-1297;
Dimasi et at.,
(2009) J Mol Biol. 393:672-692; and Michaelson et at., (2009) mAbs 1:128-141.
The bispecific molecules can be prepared by conjugating the constituent
binding specificities,
using methods known in the art. For example, each binding specificity of the
bispecific
molecule can be generated separately and then conjugated to one another, for
example, a
variety of coupling or cross-linking agents can be used for covalent
conjugation. Examples of
cross-linking agents include protein A, carbodiimide, N-succinimidyl-S-acetyl-
thioacetate
(SATA), 5,5'-dithiobis(2-nitrobenzoic acid) (DTNB), o-phenylenedimaleimide
(oPDM), N-
succinimidy1-3-(2-pyridyldithio)propionate (SPDP), and sulfosuccinimidyl 4-(N-
maleimidomethyl) cyclohaxane-l-carboxylate (sulfo-SMCC) (see e.g., Karpovsky
et at.,
(1984) J. Exp. Med. 160:1686; Liu et al., (1985) Proc. Natl. Acad. Sci. USA
82:8648). Other
methods include those described in Paulus (1985) Behring Ins. Mitt. No. 78:118-
132; Brennan
et at., (1985) Science 229:81-83), and Glennie et at., (1987) J. Immunol. 139:
2367-2375).
Conjugating agents are SATA and sulfo-SMCC, both available from Pierce
Chemical Co.
(Rockford, IL).
With antibodies, they can be conjugated by sulfhydryl bonding of the C-
terminus hinge
regions of the two heavy chains. In a particularly embodiment, the hinge
region is modified to
contain an odd number of sulfhydryl residues, for example one, prior to
conjugation.
Alternatively, both binding specificities can be encoded in the same vector
and expressed and
assembled in the same host cell. This method is particularly useful where the
bispecific
molecule is a mAb x mAb, mAb x Fab, Fab x F(ab')2 or ligand x Fab fusion
protein. A
bispecific molecule of the invention can be a single chain molecule comprising
one single
chain antibody and a binding determinant, or a single chain bispecific
molecule comprising
two binding determinants. Bispecific molecules may comprise at least two
single chain
molecules. Methods for preparing bispecific molecules are described for
example in U.S.
Patent Number 5,260,203; U.S. Patent Number 5,455,030; U.S. Patent Number
4,881,175;
U.S. Patent Number 5,132,405; U.S. Patent Number 5,091,513; U.S. Patent Number
5,476,786; U.S. Patent Number 5,013,653; U.S. Patent Number 5,258,498; and
U.S. Patent
Number 5,482,858.
Binding of the bispecific molecules to their specific targets can be confirmed
by, for example,
enzyme-linked immunosorbent assay (ELISA), radioimmunoassay (REA), FACS
analysis,
bioassay (e.g., growth inhibition), or Western Blot assay. Each of these
assays generally
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detects the presence of protein-antibody complexes of particular interest by
employing a
labeled reagent (e.g., an antibody) specific for the complex of interest.
In another aspect, the present invention provides multivalent compounds
comprising at least
two identical or different fragments of the antibodies binding to HER3. The
antibody
fragments can be linked together via protein fusion or covalent or non
covalent linkage.
Tetravalent compounds can be obtained for example by cross-linking antibodies
of the
antibodies of the invention with an antibody that binds to the constant
regions of the
antibodies of the invention, for example the Fc or hinge region. Trimerizing
domain are
described for example in Borean patent EP 1012280B1. Pentamerizing modules are
described
for example in PCT/EP97/05897.
In one embodiment, the biparatopic/bispecific antibody binds to at least amino
acids residue
in domain 3 of HER3 selected from amino acid residues: 335-342, 362-376,
398,400, 424-
428, 431, 433-434 and 455 (within domain 3), or a subset thereof. In one
embodiment, the
biparatopic/bispecific antibody binds to at least amino acids residue in
domain 3 of HER3
selected from amino acid residues: 571, 582-584, 596-597, 600-602, 609-615 (of
domain 4),
or a subset thereof
In another embodiment, the invention pertains to dual function antibodies in
which a single
monoclonal antibody has been modified such that the antigen binding site binds
to more than
one antigen, such as a dual function antibody which binds both HER3 and
another antigen
(e.g., HER1, HER2, and HER4). In another embodiment, the invention pertains to
a dual
function antibody that targets antigens having the same conformation, for
example an antigen
that has the same conformation of HER3 in the "closed" or "inactive" state.
Examples of
antigens with the same conformation of HER3 in the "closed" or "inactive"
state include, but
are not limited to, HER1 and HER4. Thus, a dual function antibody may bind to
both HER3
and HER1; HER3 and HER4, or HER1 and HER4. The dual binding specificity of the
dual
function antibody may further translate into dual activity, or inhibition of
activity. (See e.g.,
Jenny Bostrom et at., (2009) Science: 323; 1610-1614).
Antibodies with Extended Half Life
The present invention provides for antibodies or fragments thereof that
specifically bind to a
non-linear or conformational epitope within domain 3 of HER3 which have an
extended half-
life in vivo. The present invention also provides for antibodies that
specifically bind to an
epitope within domain 4 of HER3 which have an extended half-life in vivo.
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Many factors may affect a protein's half life in vivo. For examples, kidney
filtration,
metabolism in the liver, degradation by proteolytic enzymes (proteases), and
immunogenic
responses (e.g., protein neutralization by antibodies and uptake by
macrophages and dentritic
cells). A variety of strategies can be used to extend the half life of the
antibodies of the
present invention. For example, by chemical linkage to polyethyleneglycol
(PEG), reCODE
PEG, antibody scaffold, polysialic acid (PSA), hydroxyethyl starch (HES),
albumin-binding
ligands, and carbohydrate shields; by genetic fusion to proteins binding to
serum proteins,
such as albumin, IgG, FcRn, and transferring; by coupling (genetically or
chemically) to other
binding moieties that bind to serum proteins, such as nanobodies, Fabs,
DARPins, avimers,
affibodies, and anticalins; by genetic fusion to rPEG, albumin, domain of
albumin, albumin-
binding proteins, and Fc; or by incorporation into nanocarriers, slow release
formulations, or
medical devices.
To prolong the serum circulation of antibodies in vivo, inert polymer
molecules such as high
molecular weight PEG can be attached to the antibodies or a fragment thereof
with or without
a multifunctional linker either through site-specific conjugation of the PEG
to the N- or C-
terminus of the antibodies or via epsilon-amino groups present on lysine
residues. To
pegylate an antibody, the antibody, or fragment thereof, typically is reacted
with polyethylene
glycol (PEG), such as a reactive ester or aldehyde derivative of PEG, under
conditions in
which one or more PEG groups become attached to the antibody or antibody
fragment. The
pegylation can be carried out by an acylation reaction or an alkylation
reaction with a reactive
PEG molecule (or an analogous reactive water-soluble polymer). As used herein,
the term
"polyethylene glycol" is intended to encompass any of the forms of PEG that
have been used
to derivatize other proteins, such as mono (CI-CIO) alkoxy- or aryloxy-
polyethylene glycol or
polyethylene glycol-maleimide. In certain embodiments, the antibody to be
pegylated is an
aglycosylated antibody. Linear or branched polymer derivatization that results
in minimal
loss of biological activity will be used. The degree of conjugation can be
closely monitored
by SDS-PAGE and mass spectrometry to ensure proper conjugation of PEG
molecules to the
antibodies. Unreacted PEG can be separated from antibody-PEG conjugates by
size-
exclusion or by ion-exchange chromatography. PEG-derivatized antibodies can be
tested for
binding activity as well as for in vivo efficacy using methods well-known to
those of skill in
the art, for example, by immunoassays described herein. Methods for pegylating
proteins are
known in the art and can be applied to the antibodies of the invention. See
for example, EP 0
154 316 by Nishimura et at. and EP 0 401 384 by Ishikawa et at.
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Other modified pegylation technologies include reconstituting chemically
orthogonal directed
engineering technology (ReCODE PEG), which incorporates chemically specified
side chains
into biosynthetic proteins via a reconstituted system that includes tRNA
synthetase and tRNA.
This technology enables incorporation of more than 30 new amino acids into
biosynthetic
proteins in E.coli, yeast, and mammalian cells. The tRNA incorporates a
nonnative amino
acid any place an amber codon is positioned, converting the amber from a stop
codon to one
that signals incorporation of the chemically specified amino acid.
Recombinant pegylation technology (rPEG) can also be used for serum half-life
extension.
This technology involves genetically fusing a 300-600 amino acid unstructured
protein tail to
an existing pharmaceutical protein. Because the apparent molecular weight of
such an
unstructured protein chain is about 15-fold larger than its actual molecular
weight, the serum
half-life of the protein is greatly increased. In contrast to traditional
PEGylation, which
requires chemical conjugation and repurification, the manufacturing process is
greatly
simplified and the product is homogeneous.
Polysialytion is another technology, which uses the natural polymer polysialic
acid (PSA) to
prolong the active life and improve the stability of therapeutic peptides and
proteins. PSA is a
polymer of sialic acid (a sugar). When used for protein and therapeutic
peptide drug delivery,
polysialic acid provides a protective microenvironment on conjugation. This
increases the
active life of the therapeutic protein in the circulation and prevents it from
being recognized
by the immune system. The PSA polymer is naturally found in the human body. It
was
adopted by certain bacteria which evolved over millions of years to coat their
walls with it.
These naturally polysialylated bacteria were then able, by virtue of molecular
mimicry, to foil
the body's defense system. PSA, nature's ultimate stealth technology, can be
easily produced
from such bacteria in large quantities and with predetermined physical
characteristics.
Bacterial PSA is completely non-immunogenic, even when coupled to proteins, as
it is
chemically identical to PSA in the human body.
Another technology include the use of hydroxyethyl starch ("HES") derivatives
linked to
antibodies. HES is a modified natural polymer derived from waxy maize starch
and can be
metabolized by the body's enzymes. HES solutions are usually administered to
substitute
deficient blood volume and to improve the rheological properties of the blood.
Hesylation of
an antibody enables the prolongation of the circulation half-life by
increasing the stability of
the molecule, as well as by reducing renal clearance, resulting in an
increased biological
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activity. By varying different parameters, such as the molecular weight of
HES, a wide range
of HES antibody conjugates can be customized.
Antibodies having an increased half-life in vivo can also be generated
introducing one or more
amino acid modifications (i.e., substitutions, insertions or deletions) into
an IgG constant
domain, or FcRn binding fragment thereof (preferably a Fc or hinge Fc domain
fragment).
See, e.g., International Publication No. WO 98/23289; International
Publication No. WO
97/34631; and U.S. Patent No. 6,277,375.
Further, antibodies can be conjugated to albumin in order to make the antibody
or antibody
fragment more stable in vivo or have a longer half life in vivo. The
techniques are well-known
in the art, see, e.g., International Publication Nos. WO 93/15199, WO
93/15200, and WO
01/77137; and European Patent No. EP 413,622.
The HER3 antibody or a fragment thereof may also be fused to one or more human
serum
albumin (HSA) polypeptides, or a portion thereof HSA, a protein of 585 amino
acids in its
mature form, is responsible for a significant proportion of the osmotic
pressure of serum and
also functions as a carrier of endogenous and exogenous ligands. The role of
albumin as a
carrier molecule and its inert nature are desirable properties for use as a
carrier and transporter
of polypeptides in vivo. The use of albumin as a component of an albumin
fusion protein as a
carrier for various proteins has been suggested in WO 93/15199, WO 93/15200,
and EP 413
622. The use of N-terminal fragments of HSA for fusions to polypeptides has
also been
proposed (EP 399 666). Accordingly, by genetically or chemically fusing or
conjugating the
antibodies or fragments thereof to albumin, can stabilize or extend the shelf-
life, and/or to
retain the molecule's activity for extended periods of time in solution, in
vitro and/or in vivo.
Fusion of albumin to another protein may be achieved by genetic manipulation,
such that the
DNA coding for HSA, or a fragment thereof, is joined to the DNA coding for the
protein. A
suitable host is then transformed or transfected with the fused nucleotide
sequences, so
arranged on a suitable plasmid as to express a fusion polypeptide. The
expression may be
effected in vitro from, for example, prokaryotic or eukaryotic cells, or in
vivo e.g. from a
transgenic organism. Additional methods pertaining to HSA fusions can be
found, for
example, in WO 2001077137 and WO 200306007, incorporated herein by reference.
In a
specific embodiment, the expression of the fusion protein is performed in
mammalian cell
lines, for example, CHO cell lines. Altered differential binding of an
antibody to a receptor at
low or high pHs is also contemplated to be within the scope of the invention.
For example,
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the affinity of an antibody may be modified such that it remains bound to it's
receptor at a low
pH, e.g., the low pH within a lyzozome, by modifying the antibody to include
additional
amino acids such as a histine in a CDR of the antibody (See e.g., Tomoyuki
Igawa et at.
(2010) Nature Biotechnology; 28, 1203-1207).
Antibody Conjugates
The present invention provides antibodies or fragments thereof that
specifically bind to HER3
recombinantly fused or chemically conjugated (including both covalent and non-
covalent
conjugations) to a heterologous protein or polypeptide (or fragment thereof,
preferably to a
polypeptide of at least 10, at least 20, at least 30, at least 40, at least
50, at least 60, at least 70,
at least 80, at least 90 or at least 100 amino acids) to generate fusion
proteins. In particular,
the invention provides fusion proteins comprising an antibody fragment
described herein (e.g.,
a Fab fragment, Fd fragment, Fv fragment, F(ab)2 fragment, a VH domain, a VH
CDR, a VL
domain or a VL CDR) and a heterologous protein, polypeptide, or peptide.
Methods for
fusing or conjugating proteins, polypeptides, or peptides to an antibody or an
antibody
fragment are known in the art. See, e.g., U.S. Patent Nos. 5,336,603,
5,622,929, 5,359,046,
5,349,053, 5,447,851, and 5,112,946; European Patent Nos. EP 307,434 and EP
367,166;
International Publication Nos. WO 96/04388 and WO 91/06570; Ashkenazi et al.,
(1991)
Proc. Natl. Acad. Sci. USA 88:10535-10539; Zheng et at., (1995) J. Immunol.
154:5590-
5600; and Vil et al., (1992) Proc. Natl. Acad. Sci. USA 89:11337- 11341.
Additional fusion proteins may be generated through the techniques of gene-
shuffling, motif-
shuffling, exon-shuffling, and/or codon-shuffling (collectively referred to as
"DNA
shuffling"). DNA shuffling may be employed to alter the activities of
antibodies of the
invention or fragments thereof (e.g., antibodies or fragments thereof with
higher affinities and
lower dissociation rates). See, generally, U.S. Patent Nos. 5,605,793,
5,811,238, 5,830,721,
5,834,252, and 5,837,458; Patten et at., (1997) Curr. Opinion Biotechnol.
8:724-33;
Harayama, (1998) Trends Biotechnol. 16(2):76-82; Hansson et at., (1999) J.
Mol. Biol.
287:265-76; and Lorenzo and Blasco, (1998) Biotechniques 24(2):308- 313 (each
of these
patents and publications are hereby incorporated by reference in its
entirety). Antibodies or
fragments thereof, or the encoded antibodies or fragments thereof, may be
altered by being
subjected to random mutagenesis by error-prone PCR, random nucleotide
insertion or other
methods prior to recombination. A polynucleotide encoding an antibody or
fragment thereof
that specifically binds to a HER3 protein may be recombined with one or more
components,
motifs, sections, parts, domains, fragments, etc. of one or more heterologous
molecules.
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Moreover, the antibodies or fragments thereof can be fused to marker
sequences, such as a
peptide to facilitate purification. In preferred embodiments, the marker amino
acid sequence
is a hexa-histidine peptide, such as the tag provided in a pQE vector (QIAGEN,
Inc., 9259
Eton Avenue, Chatsworth, CA, 91311), among others, many of which are
commercially
available. As described in Gentz et at., (1989) Proc. Natl. Acad. Sci. USA
86:821-824, for
instance, hexa-histidine provides for convenient purification of the fusion
protein. Other
peptide tags useful for purification include, but are not limited to, the
hemagglutinin ("HA")
tag, which corresponds to an epitope derived from the influenza hemagglutinin
protein
(Wilson et at., (1984) Cell 37:767), and the "flag" tag.
In other embodiments, antibodies of the present invention or fragments thereof
conjugated to
a diagnostic or detectable agent. Such antibodies can be useful for monitoring
or prognosing
the onset, development, progression and/or severity of a disease or disorder
as part of a
clinical testing procedure, such as determining the efficacy of a particular
therapy. Such
diagnosis and detection can accomplished by coupling the antibody to
detectable substances
including, but not limited to, various enzymes, such as, but not limited to,
horseradish
peroxidase, alkaline phosphatase, beta-galactosidase, or acetylcholinesterase;
prosthetic
groups, such as, but not limited to, streptavidinlbiotin and avidin/biotin;
fluorescent materials,
such as, but not limited to, umbelliferone, fluorescein, fluorescein
isothiocynate, rhodamine,
dichlorotriazinylamine fluorescein, dansyl chloride or phycoerythrin;
luminescent materials,
such as, but not limited to, luminol; bioluminescent materials, such as but
not limited to,
luciferase, luciferin, and aequorin; radioactive materials, such as, but not
limited to, iodine
(3115 12515 123-.-15
and 1211,), carbon (14C), sulfur (35S), tritium (3H), indium (115In, 113In,
ii2-rn,
1 and
"In,), technetium (99Tc), thallium (201Ti), gallium (68Ga, 67Ga), palladium (1
3Pd),
molybdenum (99Mo), xenon (133Xe), fluorine (18F), 1535M, 171U, 159Gd, 149pm,
140La, 175yb,
Rh 97Ru, 68Ge, 57Co, 65Zu, 855r, 32P, 153Gd, 169Yb,
51Cr, 54Mn, 755e, 1135n, and 117Tin; and positron emitting metals using
various positron
emission tomographies, and noradioactive paramagnetic metal ions.
The present invention further encompasses uses of antibodies or fragments
thereof conjugated
to a therapeutic moiety. An antibody or fragment thereof may be conjugated to
a therapeutic
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Further, an antibody or fragment thereof may be conjugated to a therapeutic
moiety or drug
moiety that modifies a given biological response. Therapeutic moieties or drug
moieties are
not to be construed as limited to classical chemical therapeutic agents. For
example, the drug
moiety may be a protein, peptide, or polypeptide possessing a desired
biological activity.
Such proteins may include, for example, a toxin such as abrin, ricin A,
pseudomonas
exotoxin, cholera toxin, or diphtheria toxin; a protein such as tumor necrosis
factor, a-
interferon, I3-interferon, nerve growth factor, platelet derived growth
factor, tissue
plasminogen activator, an apoptotic agent, an anti-angiogenic agent; or, a
biological response
modifier such as, for example, a lymphokine. In one embodiment, the HER3
antibody, or a
fragment thereof is conjugated to a therapeutic moiety, such as a cytotoxin, a
drug (e.g., an
immunosuppressant) or a radiotoxin. Such conjugates are referred to herein as
"immunoconjugates". Immunoconjugates that include one or more cytotoxins are
referred to
as "immunotoxins." A cytotoxin or cytotoxic agent includes any agent that is
detrimental to
(e.g., kills) cells. Examples include taxon, cytochalasin B, gramicidin D,
ethidium bromide,
emetine, mitomycin, etoposide, tenoposide, vincristine, vinblastine, t.
colchicin, doxorubicin,
daunorubicin, dihydroxy anthracin dione, mitoxantrone, mithramycin,
actinomycin D, 1 -
dehydrotestosterone, glucocorticoids, procaine, tetracaine, lidocaine,
propranolol, and
puromycin and analogs or homologs thereof Therapeutic agents also include, for
example,
antimetabolites (e.g., methotrexate, 6-mercaptopurine, 6-thioguanine,
cytarabine, 5-
fluorouracil decarbazine), ablating agents (e.g., mechlorethamine, thioepa
chloraxnbucil,
meiphalan, carmustine (BSNU) and lomustine (CCNU), cyclothosphamide, busulfan,
dibromomannitol, streptozotocin, mitomycin C, and cis-dichlorodiamine platinum
(II) (DDP)
cisplatin, anthracyclines (e.g., daunorubicin (formerly daunomycin) and
doxorubicin),
antibiotics (e.g., dactinomycin (formerly actinomycin), bleomycin,
mithramycin, and
anthramycin (AMC)), and anti-mitotic agents (e.g., vincristine and
vinblastine). (See e.g.,
Seattle Genetics U520090304721).
Other examples of therapeutic cytotoxins that can be conjugated to an antibody
or fragment
thereof of the invention include duocarmycins, calicheamicins, maytansines and
auristatins,
and derivatives thereof. An example of a calicheamicin antibody conjugate is
commercially
available (MylotargTm; Wyeth-Ayerst).
Cytoxins can be conjugated to antibodies or fragments thereof of the invention
using linker
technology available in the art. Examples of linker types that have been used
to conjugate a
cytotoxin to an antibody include, but are not limited to, hydrazones,
thioethers, esters,
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disulfides and peptide-containing linkers. A linker can be chosen that is, for
example,
susceptible to cleavage by low pH within the lysosomal compartment or
susceptible to
cleavage by proteases, such as proteases preferentially expressed in tumor
tissue such as
cathepsins (e.g., cathepsins B, C, D).
For further discussion of types of cytotoxins, linkers and methods for
conjugating therapeutic
agents to antibodies, see also Saito et al., (2003) Adv. Drug Deliv. Rev.
55:199-215; Trail et
at., (2003) Cancer Immunol. Immunother. 52:328-337; Payne, (2003) Cancer Cell
3:207-212;
Allen, (2002) Nat. Rev. Cancer 2:750-763; Pastan and Kreitman, (2002) Curr.
Opin. Investig.
Drugs 3:1089-1091; Senter and Springer, (2001) Adv. Drug Deliv. Rev. 53:247-
264.
Antibodies or fragments thereof of the present invention also can be
conjugated to a
radioactive isotope to generate cytotoxic radiopharmaceuticals, also referred
to as
radioimmunoconjugates. Examples of radioactive isotopes that can be conjugated
to
antibodies for use diagnostically or therapeutically include, but are not
limited to, iodine131,
indium", yttrium90, and lutetium'. Method for preparing radioimmunconjugates
are
established in the art. Examples of radioimmunoconjugates are commercially
available,
including ZevalinTM (DEC Pharmaceuticals) and BexxarTM (Corixa
Pharmaceuticals), and
similar methods can be used to prepare radioimmunoconjugates using the
antibodies of the
invention. In certain embodiments, the macrocyclic chelator is 1,4,7,10-
tetraazacyclododecane-N,N',N",N" '-tetraacetic acid (DOTA) which can be
attached to the
antibody via a linker molecule. Such linker molecules are commonly known in
the art and
described in Denardo et at., (1998) Clin Cancer Res. 4(10):2483-90; Peterson
et at., (1999)
Bioconjug. Chem. 10(4):553-7; and Zimmerman et at., (1999) Nucl. Med. Biol.
26(8):943-50,
each incorporated by reference in their entireties.
Techniques for conjugating therapeutic moieties to antibodies are well known,
see, e.g.,
Amon et at., "Monoclonal Antibodies For Immunotargeting Of Drugs In Cancer
Therapy", in
Monoclonal Antibodies And Cancer Therapy, Reisfeld et at. (eds.), pp. 243-56
(Alan R. Liss,
Inc. 1985); Hellstrom et at., "Antibodies For Drug Delivery", in Controlled
Drug Delivery
(2nd Ed.), Robinson et at. (eds.), pp. 623-53 (Marcel Dekker, Inc. 1987);
Thorpe, "Antibody
Carriers Of Cytotoxic Agents In Cancer Therapy: A Review", in Monoclonal
Antibodies 84:
Biological And Clinical Applications, Pinchera et at. (eds.), pp. 475-506
(1985); "Analysis,
Results, And Future Prospective Of The Therapeutic Use Of Radiolabeled
Antibody In
Cancer Therapy", in Monoclonal Antibodies For Cancer Detection And Therapy,
Baldwin et
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at. (eds.), pp. 303-16 (Academic Press 1985), and Thorpe et at., (1982)
Immunol. Rev.
62:119-58.
Antibodies may also be attached to solid supports, which are particularly
useful for
immunoassays or purification of the target antigen. Such solid supports
include, but are not
limited to, glass, cellulose, polyacrylamide, nylon, polystyrene, polyvinyl
chloride or
polypropylene.
Antibody Combinations
An another aspect, the invention pertains to HER3 antibodies, or fragments
thereof of the
invention used with other therapeutic agents such as another antibodies, small
molecule
inhibitors, mTOR inhibitors or PI3Kinase inhibitors. Examples include, but are
not limited to,
the following:
HER] inhibitors: The HER3 antibodies or fragments thereof can be used with
HER1
inhibitors which include, but are not limited to, Matuzumab (EMD72000),
Erbitux0/Cetuximab (Imclone), Vectibix0 /Panitumumab (Amgen), mAb 806, and
Nimotuzumab (TheraCIM), Iressa0 /Gefitinib (Astrazeneca); CI-1033 (PD183805)
(Pfizer),
Lapatinib (GW-572016) (GlaxoSmithKline), Tykerb0 /Lapatinib Ditosylate
(SmithKlineBeecham), Tarceva0 / Erlotinib HCL (OSI-774) (OSI Pharma) , and
P1(I-166
(Novartis), and N-[4-[(3-Chloro-4-fluorophenyl)amino]-7-[[(3"S")-tetrahydro-3-
furanyl]oxy]-
6-quinazoliny1]-4(dimethylamino)-2-butenamide, sold under the tradename Tovok0
by
Boehringer Ingelheim).
HER2 inhibitors: The HER3 antibodies or fragments thereof can be used with
HER2
inhibitors which include, but are not limited to, Pertuzumab (sold under the
trademark
OmnitargO, by Genentech), Trastuzumab (sold under the trademark Herceptin0 by
Genentech/Roche), MM-111, neratinib (also known as HKI-272, (2E)-N-[44[3-
chloro-4-
[(pyridin-2-yl)methoxy]phenyl]amino]-3-cyano-7-ethoxyquinolin-6-y1]-4-
(dimethylamino)but-2-enamide, and described PCT Publication No. WO 05/028443),
lapatinib or lapatinib ditosylate (sold under the trademark Tykerb0 by
GlaxoSmithKline.
HER3 inhibitors: The HER3 antibodies or fragments thereof can be used with
HER3
inhibitors which include, but are not limited to, MM-121, MM-111, IB4C3,
2DID12 (U3
Pharma AG), AMG888 (Amgen), AV-203(Aveo), MEHD7945A (Genentech), and small
molecules that inhibit HER3.
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HER4 inhibitors: The HER3 antibodies or fragments thereof can be used with
HER4
inhibitors.
PI3K inhibitors: The HER3 antibodies or fragments thereof can be used with PI3
kinase
inhibitors which include, but are not limited to, 442-(1H-Indazol-4-y1)-64[4-
(methylsulfonyl)piperazin-l-yl]methyl]thieno[3,2-d]pyrimidin-4-yl]morpholine
(also known
as GDC 0941 and described in PCT Publication Nos. WO 09/036082 and WO
09/055730), 2-
Methy1-2-[4-[3-methy1-2-oxo-8-(quinolin-3-y1)-2,3-dihydroimidazo[4,5-
c]quinolin-1-
yl]phenyl]propionitrile (also known as BEZ 235 or NVP-BEZ 235, and described
in PCT
Publication No. WO 06/122806), BKM120 and BYL719.
mTOR inhibitors: The HER3 antibodies or fragments thereof can be used with
mTOR
inhibitors which include, but are not limited to, Temsirolimus (sold under the
tradename
Torisel0 by Pfizer), ridaforolimus (formally known as deferolimus, (1R,2R,4S)-
4-[(2R)-2
[(1R,9S,12S,15R,16E,18R,19R,21R, 23S,24E,26E,28Z,30S,32S,35R)-1,18-dihydroxy-
19,30-
dimethoxy-15,17,21,23, 29,35-hexamethy1-2,3,10,14,20-pentaoxo-11,36-dioxa-4-
azatricyclo[30.3.1.04,9] hexatriaconta-16,24,26,28-tetraen-12-yl]propy1]-2-
methoxycyclohexyl dimethylphosphinate, also known as Deforolimus, AP23573 and
MK8669
(Ariad Pharm.), and described in PCT Publication No. WO 03/064383), everolimus
(RAD001) (sold under the tradename Afinitor0 by Novartis), One or more
therapeutic agents
may be administered either simultaneously or before or after administration of
a HER3
antibody or fragment thereof of the present invention.
Methods of Producing Antibodies of the Invention
(i) Nucleic Acids Encoding the Antibodies
The invention provides substantially purified nucleic acid molecules which
encode
polypeptides comprising segments or domains of the HER3 antibody chains
described above.
Some of the nucleic acids of the invention comprise the nucleotide sequence
encoding the
HER3 antibody heavy chain variable region, and/or the nucleotide sequence
encoding the
light chain variable region. In a specific embodiment, the nucleic acid
molecules are those
identified in Table 1 or Table 2. Some other nucleic acid molecules of the
invention comprise
nucleotide sequences that are substantially identical (e.g., at least 80%,
90%, 95%, 96%, 97%,
98%, or 99%) to the nucleotide sequences of those identified in Table 1 or
Table 2. When
expressed from appropriate expression vectors, polypeptides encoded by these
polynucleotides are capable of exhibiting HER3 antigen binding capacity.
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Also provided in the invention are polynucleotides which encode at least one
CDR region and
usually all three CDR regions from the heavy or light chain of the antibody or
fragment
thereof set forth above. Some other polynucleotides encode all or
substantially all of the
variable region sequence of the heavy chain and/or the light chain of the
antibody or fragment
thereof set forth above. Because of the degeneracy of the code, a variety of
nucleic acid
sequences will encode each of the immunoglobulin amino acid sequences.
The nucleic acid molecules of the invention can encode both a variable region
and a constant
region of the antibody. Some of nucleic acid sequences of the invention
comprise nucleotides
encoding a mature heavy chain variable region sequence that is substantially
identical (e.g., at
least least 80%, 90%, 95%, 96%, 97%, 98%, or 99%) to the mature heavy chain
variable
region sequence of a HER3 antibody set forth in Table 1 or Table 2. Some other
nucleic acid
sequences comprising nucleotide encoding a mature light chain variable region
sequence that
is substantially identical (e.g., at least 80%, 90%, 95%, 96%, 97%, 98%, or
99%) to the
mature light chain variable region sequence of a HER3 antibody set forth in
Table 1 or Table
2.
The polynucleotide sequences can be produced by de novo solid-phase DNA
synthesis or by
PCR mutagenesis of an existing sequence encoding the antibody or fragment
thereof Direct
chemical synthesis of nucleic acids can be accomplished by methods known in
the art, such as
the phosphotriester method of Narang et at., (1979) Meth. Enzymol. 68:90; the
phosphodiester method of Brown et at., (1979) Meth. Enzymol. 68:109; the
diethylphosphoramidite method of Beaucage et at., (1981) Tetra. Lett.,
22:1859; and the solid
support method of U.S. Patent No. 4,458,066. Introducing mutations to a
polynucleotide
sequence by PCR can be performed as described in, e.g., PCR Technology:
Principles and
Applications for DNA Amplification, H.A. Erlich (Ed.), Freeman Press, NY, NY,
1992; PCR
Protocols: A Guide to Methods and Applications, Innis et at. (Ed.), Academic
Press, San
Diego, CA, 1990; Mattila et at., (1991) Nucleic Acids Res. 19:967; and Eckert
et at., (1991)
PCR Methods and Applications 1:17.
Also provided in the invention are expression vectors and host cells for
producing the
antibodies or fragments thereof Various expression vectors can be employed to
express the
polynucleotides encoding the HER3 antibody chains or fragments thereof. Both
viral-based
and nonviral expression vectors can be used to produce the antibodies in a
mammalian host
cell. Nonviral vectors and systems include plasmids, episomal vectors,
typically with an
expression cassette for expressing a protein or RNA, and human artificial
chromosomes (see,
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e.g., Harrington et at., (1997) Nat Genet 15:345). For example, nonviral
vectors useful for
expression of the HER3 polynucleotides and polypeptides in mammalian (e.g.,
human) cells
include pThioHis A, B & C, pcDNA3.1/His, pEBVHis A, B & C, (Invitrogen, San
Diego,
CA), MPSV vectors, and numerous other vectors known in the art for expressing
other
proteins. Useful viral vectors include vectors based on retroviruses,
adenoviruses,
adenoassociated viruses, herpes viruses, vectors based on 5V40, papilloma
virus, HBP
Epstein Barr virus, vaccinia virus vectors and Semliki Forest virus (SFV).
See, Brent et at.,
(1995) supra; Smith, Annu. Rev. Microbiol. 49:807; and Rosenfeld et at.,
(1992) Cell 68:143.
The choice of expression vector depends on the intended host cells in which
the vector is to be
expressed. Typically, the expression vectors contain a promoter and other
regulatory
sequences (e.g., enhancers) that are operably linked to the polynucleotides
encoding an
antibody chain or fragment thereof In some embodiments, an inducible promoter
is
employed to prevent expression of inserted sequences except under inducing
conditions.
Inducible promoters include, e.g., arabinose, lacZ, metallothionein promoter
or a heat shock
promoter. Cultures of transformed organisms can be expanded under noninducing
conditions
without biasing the population for coding sequences whose expression products
are better
tolerated by the host cells. In addition to promoters, other regulatory
elements may also be
required or desired for efficient expression of antibody chain or fragment
thereof These
elements typically include an ATG initiation codon and adjacent ribosome
binding site or
other sequences. In addition, the efficiency of expression may be enhanced by
the inclusion
of enhancers appropriate to the cell system in use (see, e.g., Scharf et at.,
(1994) Results
Probl. Cell Differ. 20:125; and Bittner et al., (1987) Meth. Enzymol.,
153:516). For example,
the 5V40 enhancer or CMV enhancer may be used to increase expression in
mammalian host
cells.
The expression vectors may also provide a secretion signal sequence position
to form a fusion
protein with polypeptides encoded by inserted antibody or fragment sequences.
More often,
the inserted antibody or fragment sequences are linked to a signal sequences
before inclusion
in the vector. Vectors to be used to receive sequences encoding the antibody
or fragment light
and heavy chain variable domains sometimes also encode constant regions or
parts thereof
Such vectors allow expression of the variable regions as fusion proteins with
the constant
regions thereby leading to production of intact antibodies or fragments
thereof. Typically,
such constant regions are human.
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The host cells for harboring and expressing the antibody or fragment chains
can be either
prokaryotic or eukaryotic. E. coli is one prokaryotic host useful for cloning
and expressing
the polynucleotides of the present invention. Other microbial hosts suitable
for use include
bacilli, such as Bacillus subtilis, and other enterobacteriaceae, such as
Salmonella, Serratia,
and various Pseudomonas species. In these prokaryotic hosts, one can also make
expression
vectors, which typically contain expression control sequences compatible with
the host cell
(e.g., an origin of replication). In addition, any number of a variety of well-
known promoters
will be present, such as the lactose promoter system, a tryptophan (trp)
promoter system, a
beta-lactamase promoter system, or a promoter system from phage lambda. The
promoters
typically control expression, optionally with an operator sequence, and have
ribosome binding
site sequences and the like, for initiating and completing transcription and
translation. Other
microbes, such as yeast, can also be employed to express antibodies or
fragments thereof
Insect cells in combination with baculovirus vectors can also be used.
In some preferred embodiments, mammalian host cells are used to express and
produce the
antibodies or fragments thereof For example, they can be either a hybridoma
cell line
expressing endogenous immunoglobulin genes or a mammalian cell line harboring
an
exogenous expression vector. These include any normal mortal or normal or
abnormal
immortal animal or human cell. For example, a number of suitable host cell
lines capable of
secreting intact immunoglobulins have been developed including the CHO cell
lines, various
Cos cell lines, HeLa cells, myeloma cell lines, transformed B-cells and
hybridomas. The use
of mammalian tissue cell culture to express polypeptides is discussed
generally in, e.g.,
Winnacker, FROM GENES TO CLONES, VCH Publishers, N.Y., N.Y., 1987. Expression
vectors for mammalian host cells can include expression control sequences,
such as an origin
of replication, a promoter, and an enhancer (see, e.g., Queen et al., (1986)
Immunol. Rev.
89:49-68), and necessary processing information sites, such as ribosome
binding sites, RNA
splice sites, polyadenylation sites, and transcriptional terminator sequences.
These expression
vectors usually contain promoters derived from mammalian genes or from
mammalian
viruses. Suitable promoters may be constitutive, cell type-specific, stage-
specific, and/or
modulatable or regulatable. Useful promoters include, but are not limited to,
the
metallothionein promoter, the constitutive adenovirus major late promoter, the
dexamethasone-inducible MMTV promoter, the 5V40 promoter, the MRP polIII
promoter,
the constitutive MPSV promoter, the tetracycline-inducible CMV promoter (such
as the
human immediate-early CMV promoter), the constitutive CMV promoter, and
promoter-
enhancer combinations known in the art.
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Methods for introducing expression vectors containing the polynucleotide
sequences of
interest vary depending on the type of cellular host. For example, calcium
chloride
transfection is commonly utilized for prokaryotic cells, whereas calcium
phosphate treatment
or electroporation may be used for other cellular hosts. (See generally
Sambrook, et at.,
supra). Other methods include, e.g., electroporation, calcium phosphate
treatment, liposome-
mediated transformation, injection and microinjection, ballistic methods,
virosomes,
immunoliposomes, polycation:nucleic acid conjugates, naked DNA, artificial
virions, fusion
to the herpes virus structural protein VP22 (Elliot and O'Hare, (1997) Cell
88:223), agent-
enhanced uptake of DNA, and ex vivo transduction. For long-term, high-yield
production of
recombinant proteins, stable expression will often be desired. For example,
cell lines which
stably express antibody chains or fragments can be prepared using expression
vectors of the
invention which contain viral origins of replication or endogenous expression
elements and a
selectable marker gene. Following the introduction of the vector, cells may be
allowed to
grow for 1-2 days in an enriched media before they are switched to selective
media. The
purpose of the selectable marker is to confer resistance to selection, and its
presence allows
growth of cells which successfully express the introduced sequences in
selective media.
Resistant, stably transfected cells can be proliferated using tissue culture
techniques
appropriate to the cell type.
(ii) Generation of monoclonal antibodies of the invention
Monoclonal antibodies (mAbs) can be produced by a variety of techniques,
including
conventional monoclonal antibody methodology e.g., the standard somatic cell
hybridization
technique of Kohler and Milstein, (1975) Nature 256:495. Many techniques for
producing
monoclonal antibody can be employed e.g., viral or oncogenic transformation of
B
lymphocytes.
An animal system for preparing hybridomas is the murine system. Hybridoma
production in
the mouse is a well established procedure. Immunization protocols and
techniques for
isolation of immunized splenocytes for fusion are known in the art. Fusion
partners (e.g.,
murine myeloma cells) and fusion procedures are also known.
Chimeric or humanized antibodies of the present invention can be prepared
based on the
sequence of a murine monoclonal antibody prepared as described above. DNA
encoding the
heavy and light chain immunoglobulins can be obtained from the murine
hybridoma of
interest and engineered to contain non-murine (e.g.,. human) immunoglobulin
sequences
using standard molecular biology techniques. For example, to create a chimeric
antibody, the
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murine variable regions can be linked to human constant regions using methods
known in the
art (see e.g., U.S. Patent No. 4,816,567 to Cabilly et al.). To create a
humanized antibody, the
murine CDR regions can be inserted into a human framework using methods known
in the art.
See e.g., U.S. Patent No. 5225539 to Winter, and U.S. Patent Nos. 5530101;
5585089;
5693762 and 6180370 to Queen et at.
In a certain embodiment, the antibodies of the invention are human monoclonal
antibodies.
Such human monoclonal antibodies directed against HER3 can be generated using
transgenic
or transchromosomic mice carrying parts of the human immune system rather than
the mouse
system. These transgenic and transchromosomic mice include mice referred to
herein as
HuMAb mice and KM mice, respectively, and are collectively referred to herein
as "human Ig
mice."
The HuMAb mouse (Medarex, Inc.) contains human immunoglobulin gene miniloci
that
encode un-rearranged human heavy ( and y) and lc light chain immunoglobulin
sequences,
together with targeted mutations that inactivate the endogenous and lc chain
loci (see e.g.,
Lonberg et at., (1994) Nature 368(6474): 856-859). Accordingly, the mice
exhibit reduced
expression of mouse IgM or lc, and in response to immunization, the introduced
human heavy
and light chain transgenes undergo class switching and somatic mutation to
generate high
affinity human IgGic monoclonal (Lonberg et at., (1994) supra; reviewed in
Lonberg, (1994)
Handbook of Experimental Pharmacology 113:49-101; Lonberg and Huszar, (1995)
Intern.
Rev. Immuno1.13:65-93, and Harding and Lonberg, (1995) Ann. N. Y. Acad. Sci.
764:536-
546). The preparation and use of HuMAb mice, and the genomic modifications
carried by
such mice, is further described in Taylor et at., (1992) Nucleic Acids
Research 20:6287-6295;
Chen et at., (1993) International Immunology 5:647-656; Tuaillon et at.,
(1993) Proc. Natl.
Acad. Sci. USA 94:3720-3724; Choi et at., (1993) Nature Genetics 4:117-123;
Chen et at.,
(1993) EMBO J. 12:821-830; Tuaillon et at., (1994) J. Immunol. 152:2912-2920;
Taylor et
at., (1994) International Immunology 579-591; and Fishwild et at., (1996)
Nature
Biotechnology 14:845-851, the contents of all of which are hereby specifically
incorporated
by reference in their entirety. See further, U.S. Patent Nos. 5,545,806;
5,569,825; 5,625,126;
5,633,425; 5,789,650; 5,877,397; 5,661,016; 5,814,318; 5,874,299; and
5,770,429; all to
Lonberg and Kay; U.S. Patent No. 5,545,807 to Surani et at.; PCT Publication
Nos. WO
92103918, WO 93/12227, WO 94/25585, WO 97113852, WO 98/24884 and WO 99/45962,
all to Lonberg and Kay; and PCT Publication No. WO 01/14424 to Korman et at.
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In another embodiment, human antibodies of the invention can be raised using a
mouse that
carries human immunoglobulin sequences on transgenes and transchomosomes such
as a
mouse that carries a human heavy chain transgene and a human light chain
transchromosome.
Such mice, referred to herein as "KM mice", are described in detail in PCT
Publication WO
02/43478 to Ishida et at.
Still further, alternative transgenic animal systems expressing human
immunoglobulin genes
are available in the art and can be used to raise HER3 antibodies of the
invention. For
example, an alternative transgenic system referred to as the Xenomouse
(Abgenix, Inc.) can
be used. Such mice are described in, e.g., U.S. Patent Nos. 5,939,598;
6,075,181; 6,114,598;
6, 150,584 and 6,162,963 to Kucherlapati et at.
Moreover, alternative transchromosomic animal systems expressing human
immunoglobulin
genes are available in the art and can be used to raise HER3 antibodies of the
invention. For
example, mice carrying both a human heavy chain transchromosome and a human
light chain
tranchromosome, referred to as "TC mice" can be used; such mice are described
in Tomizuka
et at., (2000) Proc. Natl. Acad. Sci. USA 97:722-727. Furthermore, cows
carrying human
heavy and light chain transchromosomes have been described in the art (Kuroiwa
et at.,
(2002) Nature Biotechnology 20:889-894) and can be used to raise HER3
antibodies of the
invention.
Human monoclonal antibodies of the invention can also be prepared using phage
display
methods for screening libraries of human immunoglobulin genes. Such phage
display methods
for isolating human antibodies are established in the art or described in the
examples below.
See for example: U.S. Patent Nos. 5,223,409; 5,403,484; and 5,571,698 to
Ladner et al.; U.S.
Patent Nos. 5,427,908 and 5,580,717 to Dower et al.; U.S. Patent Nos.
5,969,108 and
6,172,197 to McCafferty et at.; and U.S. Patent Nos. 5,885,793; 6,521,404;
6,544,731;
6,555,313; 6,582,915 and 6,593,081 to Griffiths et at.
Human monoclonal antibodies of the invention can also be prepared using SCID
mice into
which human immune cells have been reconstituted such that a human antibody
response can
be generated upon immunization. Such mice are described in, for example, U.S.
Patent Nos.
5,476,996 and 5,698,767 to Wilson et at.
(iii) Framework or Fe engineering
Engineered antibodies of the invention include those in which modifications
have been made
to framework residues within VH and/or VL, e.g. to improve the properties of
the antibody.
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Typically such framework modifications are made to decrease the immunogenicity
of the
antibody. For example, one approach is to "backmutate" one or more framework
residues to
the corresponding germline sequence. More specifically, an antibody that has
undergone
somatic mutation may contain framework residues that differ from the germline
sequence
from which the antibody is derived. Such residues can be identified by
comparing the
antibody framework sequences to the germline sequences from which the antibody
is derived.
To return the framework region sequences to their germline configuration, the
somatic
mutations can be "backmutated" to the germline sequence by, for example, site-
directed
mutagenesis. Such "backmutated" antibodies are also intended to be encompassed
by the
invention.
Another type of framework modification involves mutating one or more residues
within the
framework region, or even within one or more CDR regions, to remove T cell -
epitopes to
thereby reduce the potential immunogenicity of the antibody. This approach is
also referred to
as "deimmunization" and is described in further detail in U.S. Patent
Publication No.
20030153043 by Carr et at.
In addition or alternative to modifications made within the framework or CDR
regions,
antibodies of the invention may be engineered to include modifications within
the Fc region,
typically to alter one or more functional properties of the antibody, such as
serum half-life,
complement fixation, Fc receptor binding, and/or antigen-dependent cellular
cytotoxicity.
Furthermore, an antibody of the invention may be chemically modified (e.g.,
one or more
chemical moieties can be attached to the antibody) or be modified to alter its
glycosylation,
again to alter one or more functional properties of the antibody. Each of
these embodiments is
described in further detail below. The numbering of residues in the Fc region
is that of the EU
index of Kabat.
In one embodiment, the hinge region of CH1 is modified such that the number of
cysteine
residues in the hinge region is altered, e.g., increased or decreased. This
approach is
described further in U.S. Patent No. 5,677,425 by Bodmer et at. The number of
cysteine
residues in the hinge region of CH1 is altered to, for example, facilitate
assembly of the light
and heavy chains or to increase or decrease the stability of the antibody.
In another embodiment, the Fc hinge region of an antibody is mutated to
decrease the
biological half-life of the antibody. More specifically, one or more amino
acid mutations are
introduced into the CH2-CH3 domain interface region of the Fc-hinge fragment
such that the
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antibody has impaired Staphylococcyl protein A (SpA) binding relative to
native Fe-hinge
domain SpA binding. This approach is described in further detail in U.S.
Patent No. 6,165,745
by Ward et at.
In yet other embodiments, the Fe region is altered by replacing at least one
amino acid residue
with a different amino acid residue to alter the effector functions of the
antibody. For
example, one or more amino acids can be replaced with a different amino acid
residue such
that the antibody has an altered affinity for an effector ligand but retains
the antigen-binding
ability of the parent antibody. The effector ligand to which affinity is
altered can be, for
example, an Fe receptor or the Cl component of complement. This approach is
described in
further detail in U.S. Patent Nos. 5,624,821 and 5,648,260, both by Winter et
at.
In another embodiment, one or more amino acids selected from amino acid
residues can be
replaced with a different amino acid residue such that the antibody has
altered Clq binding
and/or reduced or abolished complement dependent cytotoxicity (CDC). This
approach is
described in further detail in U.S. Patent Nos. 6,194,551 by Idusogie et at.
In another embodiment, one or more amino acid residues are altered to thereby
alter the
ability of the antibody to fix complement. This approach is described further
in PCT
Publication WO 94/29351 by Bodmer et at.
In yet another embodiment, the Fe region is modified to increase the ability
of the antibody to
mediate antibody dependent cellular cytotoxicity (ADCC) and/or to increase the
affinity of the
antibody for an Fey receptor by modifying one or more amino acids. This
approach is
described further in PCT Publication WO 00/42072 by Presta. Moreover, the
binding sites on
human IgG1 for FeyR1, FeyRII, FeyRIII and FcRn have been mapped and variants
with
improved binding have been described (see Shields et at., (2001) J. Biol.
Chen. 276:6591-
6604).
In still another embodiment, the glycosylation of an antibody is modified. For
example, an
aglycoslated antibody can be made (i.e., the antibody lacks glycosylation).
Glycosylation can
be altered to, for example, increase the affinity of the antibody for
"antigen". Such
carbohydrate modifications can be accomplished by, for example, altering one
or more sites of
glycosylation within the antibody sequence. For example, one or more amino
acid
substitutions can be made that result in elimination of one or more variable
region framework
glycosylation sites to thereby eliminate glycosylation at that site. Such
aglycosylation may
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increase the affinity of the antibody for antigen. Such an approach is
described in further
detail in U.S. Patent Nos. 5,714,350 and 6,350,861 by Co et at.
Additionally or alternatively, an antibody can be made that has an altered
type of
glycosylation, such as a hypofucosylated antibody having reduced amounts of
fucosyl
residues or an antibody having increased bisecting GlcNac structures. Such
altered
glycosylation patterns have been demonstrated to increase the ADCC ability of
antibodies.
Such carbohydrate modifications can be accomplished by, for example,
expressing the
antibody in a host cell with altered glycosylation machinery. Cells with
altered glycosylation
machinery have been described in the art and can be used as host cells in
which to express
recombinant antibodies of the invention to thereby produce an antibody with
altered
glycosylation. For example, EP 1,176,195 by Hang et at. describes a cell line
with a
functionally disrupted FUT8 gene, which encodes a fucosyl transferase, such
that antibodies
expressed in such a cell line exhibit hypofucosylation. PCT Publication WO
03/035835 by
Presta describes a variant CHO cell line, Lec13 cells, with reduced ability to
attach fucose to
Asn(297)-linked carbohydrates, also resulting in hypofucosylation of
antibodies expressed in
that host cell (see also Shields et at., (2002) J. Biol. Chem. 277:26733-
26740). PCT
Publication WO 99/54342 by Umana et at. describes cell lines engineered to
express
glycoprotein-modifying glycosyl transferases (e.g., beta(1,4)-N
acetylglucosaminyltransferase
III (GnTIII)) such that antibodies expressed in the engineered cell lines
exhibit increased
bisecting GlcNac structures which results in increased ADCC activity of the
antibodies (see
also Umana et at., (1999) Nat. Biotech. 17:176-180).
In another embodiment, the antibody is modified to increase its biological
half-life. Various
approaches are possible. For example, one or more of the following mutations
can be
introduced: T252L, T2545, T256F, as described in U.S. Patent No. 6,277,375 to
Ward.
Alternatively, to increase the biological half life, the antibody can be
altered within the CH1
or CL region to contain a salvage receptor binding epitope taken from two
loops of a CH2
domain of an Fc region of an IgG, as described in U.S. Patent Nos. 5,869,046
and 6,121,022
by Presta et at.
(iv) Methods of Engineering Altered Antibodies
The HER3 antibodies or fragments thereof of the invention having VH and VL
sequences or
full length heavy and light chain sequences shown herein can be used to create
new HER3
antibodies by modifying full length heavy chain and/or light chain sequences,
VH and/or VL
sequences, or the constant region(s) attached thereto. Thus, in another aspect
of the invention,
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the structural features of a HER3 antibody or fragment therof are used to
create structurally
related HER3 antibodies that retain at least one functional property of the
antibodies of the
invention, such as binding to human HER3 and also inhibiting one or more
functional
properties of HER3. For example, one or more CDR regions of the antibodies of
the present
invention, or mutations thereof, can be combined recombinantly with known
framework
regions and/or other CDRs to create additional, recombinantly-engineered, HER3
antibodies
as discussed above. Other types of modifications include those described in
the previous
section. The starting material for the engineering method is one or more of
the VH and/or VL
sequences provided herein, or one or more CDR regions thereof To create the
engineered
antibody, it is not necessary to actually prepare (i.e., express as a protein)
an antibody having
one or more of the VH and/or VL sequences provided herein, or one or more CDR
regions
thereof Rather, the information contained in the sequence(s) is used as the
starting material
to create a "second generation" sequence(s) derived from the original
sequence(s) and then the
"second generation" sequence(s) is prepared and expressed as a protein.
Accordingly, in another embodiment, the invention provides a method for
preparing a
antibody that binds to domain 3 of HER3 consisting of: a heavy chain variable
region
antibody sequence having a CDR1 sequence selected from the group consisting of
SEQ ID
NOs: 2, 22, 42, 62, 82, 102, 122, 142, and 162; a CDR2 sequence selected from
the group
consisting of SEQ ID NOs: 3, 23, 43, 63, 83, 103, 123, 143, and 163; and/or a
CDR3
sequence selected from the group consisting of SEQ ID NOs: 4, 24, 44, 64, 84,
104, 124, 144,
and 164; and a light chain variable region antibody sequence having a CDR1
sequence
selected from the group consisting of SEQ ID NOs: 8, 28, 48, 68, 88, 108, 128,
148, and 168;
a CDR2 sequence selected from the group consisting of SEQ ID NOs: 9, 29, 49,
69, 89, 109,
129, 149, and 169; and/or a CDR3 sequence selected from the group consisting
of SEQ ID
NOs: 10, 30, 50, 70, 90, 110, 130, 150, and 170; altering at least one amino
acid residue
within the heavy chain variable region antibody sequence and/or the light
chain variable
region antibody sequence to create at least one altered antibody sequence; and
expressing the
altered antibody sequence as a protein.The altered antibody sequence can also
be prepared by
screening antibody libraries having fixed CDR3 sequences or minimal essential
binding
determinants as described in U520050255552 and diversity on CDR1 and CDR2
sequences.
The screening can be performed according to any screening technology
appropriate for
screening antibodies from antibody libraries, such as phage display
technology.
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Accordingly, in another embodiment, the invention provides a method for
preparing a
antibody that binds to domains 3-4 of HER3 consisting of: a heavy chain
variable region
antibody sequence having a CDR1 sequence selected from the group consisting of
SEQ ID
NOs: 182, 202, 222, 242, 262, 282, 302, 322, 342, 362, 382, 402, 422, 442,
462, 482, 502,
522, 542, 562, 582, 602, 622, 642, 662, and 682; a CDR2 sequence selected from
the group
consisting of SEQ ID NOs: 183, 203, 223, 243, 263, 283, 303, 323, 343, 363,
383, 403, 423,
443, 463, 483, 503, 523, 543, 563, 583, 603, 623, 643, 663, and 683; and/or a
CDR3 sequence
selected from the group consisting of SEQ ID NOs: 184, 204, 224, 244, 264,
284, 304, 324,
344, 364, 384, 404, 424, 444, 464, 484, 504, 524, 544, 564, 584, 604, 624,
644, 664, and 684;
and a light chain variable region antibody sequence having a CDR1 sequence
selected from
the group consisting of SEQ ID NOs: 188, 208, 228, 248, 268, 288, 308, 328,
348, 368, 388,
408, 428, 448, 468, 488, 508, 528, 548, 568, 588, 608, 628, 648, 668, and 688;
a CDR2
sequence selected from the group consisting of SEQ ID NOs: 189, 209, 229, 249,
269, 289,
309, 329, 349, 369, 389, 409, 429, 449, 469, 489, 509, 529, 549, 569, 589,
609, 629, 649, 669,
and 689; and/or a CDR3 sequence selected from the group consisting of SEQ ID
NOs: 190,
210, 230, 250, 270, 290, 310, 330, 350, 370, 390, 410, 430, 450, 470, 490,
510, 530, 550, 570,
590, 610, 630, 650, 670, and 690; altering at least one amino acid residue
within the heavy
chain variable region antibody sequence and/or the light chain variable region
antibody
sequence to create at least one altered antibody sequence; and expressing the
altered antibody
sequence as a protein.The altered antibody sequence can also be prepared by
screening
antibody libraries having fixed CDR3 sequences or minimal essential binding
determinants as
described in U520050255552 and diversity on CDR1 and CDR2 sequences. The
screening
can be performed according to any screening technology appropriate for
screening antibodies
from antibody libraries, such as phage display technology.
Standard molecular biology techniques can be used to prepare and express the
altered
antibody sequence. The antibody encoded by the altered antibody sequence(s) is
one that
retains one, some or all of the functional properties of the antibodies or
fragments therof
described herein, which functional properties include, but are not limited to,
specifically
binding to human and/or cynomologus HER3; the antibody binds to HER3 and
inhibits HER3
biological activity by inhibiting the HER signaling activity in a phospho-HER
assay.
The functional properties of the altered antibodies can be assessed using
standard assays
available in the art and/or described herein, such as those set forth in the
Examples (e.g.,
ELISAs).
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In certain embodiments of the methods of engineering antibodies of the
invention, mutations
can be introduced randomly or selectively along all or part of an antibody or
fragment coding
sequence and the resulting modified HER3 antibodies can be screened for
binding activity
and/or other functional properties as described herein. Mutational methods
have been
described in the art. For example, PCT Publication WO 02/092780 by Short
describes
methods for creating and screening antibody mutations using saturation
mutagenesis,
synthetic ligation assembly, or a combination thereof Alternatively, PCT
Publication WO
03/074679 by Lazar et at. describes methods of using computational screening
methods to
optimize physiochemical properties of antibodies.
Characterization of the Antibodies of the Invention
The antibodies of the invention can be characterized by various functional
assays. For
example, they can be characterized by their ability to inhibit biological
activity by inhibiting
HER signaling in a phospho-HER assay as described herein, their affinity to a
HER3 protein
(e.g., human and/or cynomologus HER3), the epitope binning, their resistance
to proteolysis,
and their ability to block HER3 downstream signaling. Various methods can be
used to
measure HER3 -mediated signaling. For example, the HER signaling pathway can
be
monitored by (i) measurement of phospho-HER3; (ii) measurement of
phosphorylation of
HER3 or other downstream signaling proteins (e.g. Akt), (iii) ligand blocking
assays as
described herein, (iv) heterodimer formation, (v) HER3 dependent gene
expression signature,
(vi) receptor internalization, and (vii) HER3 driven cell phenotypes (e.g.
proliferation).
The ability of an antibody to bind to HER3 can be detected by labelling the
antibody of
interest directly, or the antibody may be unlabelled and binding detected
indirectly using
various sandwich assay formats known in the art.
In some embodiments, the HER3 antibodies block or compete with binding of a
reference
HER3 antibody to a HER3. These can be fully human HER3 antibodies described
above.
They can also be other mouse, chimeric or humanized HER3 antibodies which bind
to the
same epitope as the reference antibody. The capacity to block or compete with
the reference
antibody binding indicates that a HER3 antibody under test binds to the same
or similar
epitope as that defined by the reference antibody, or to an epitope which is
sufficiently
proximal to the epitope bound by the reference HER3 antibody. Such antibodies
are
especially likely to share the advantageous properties identified for the
reference antibody.
The capacity to block or compete with the reference antibody may be determined
by, e.g., a
competition binding assay. With a competition binding assay, the antibody
under test is
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examined for ability to inhibit specific binding of the reference antibody to
a common antigen,
such as a HER3 polypeptide or protein. A test antibody competes with the
reference antibody
for specific binding to the antigen if an excess of the test antibody
substantially inhibits
binding of the reference antibody. Substantial inhibition means that the test
antibody reduces
specific binding of the reference antibody usually by at least 10%, 25%, 50%,
75%, or 90%.
There are a number of known competition binding assays that can be used to
assess
competition of a HER3 antibody with the reference HER3 antibody for binding to
a HER3.
These include, e.g., solid phase direct or indirect radioimmunoassay (RIA),
solid phase direct
or indirect enzyme immunoassay (EIA), sandwich competition assay (see Stahli
et at., (1983)
Methods in Enzymology 9:242-253); solid phase direct biotin-avidin EIA (see
Kirkland et at.,
(1986) J. Immunol. 137:3614-3619); solid phase direct labeled assay, solid
phase direct
labeled sandwich assay (see Harlow & Lane, supra); solid phase direct label
RIA using 1-125
label (see Morel et at., (1988) Molec. Immunol. 25:7-15); solid phase direct
biotin-avidin EIA
(Cheung et at., (1990) Virology 176:546-552); and direct labeled RIA
(Moldenhauer et at.,
(1990) Scand. J. Immunol. 32:77-82). Typically, such an assay involves the use
of purified
antigen bound to a solid surface or cells bearing either of these, an
unlabelled test HER3-
binding antibody and a labelled reference antibody. Competitive inhibition is
measured by
determining the amount of label bound to the solid surface or cells in the
presence of the test
antibody. Usually the test antibody is present in excess. Antibodies
identified by competition
assay (competing antibodies) include antibodies binding to the same epitope as
the reference
antibody and antibodies binding to an adjacent epitope sufficiently proximal
to the epitope
bound by the reference antibody for steric hindrance to occur.
To determine if the selected HER3 monoclonal antibodies bind to unique
epitopes, each
antibody can be biotinylated using commercially available reagents (e.g.,
reagents from
Pierce, Rockford, IL). Competition studies using unlabeled monoclonal
antibodies and
biotinylated monoclonal antibodies can be performed using a HER3 polypeptide
coated-
ELISA plates. Biotinylated MAb binding can be detected with a strep-avidin-
alkaline
phosphatase probe. To determine the isotype of a purified HER3-binding
antibody, isotype
ELISAs can be performed. For example, wells of microtiter plates can be coated
with 1
ug/m1 of anti-human IgG overnight at 4 C. After blocking with 1% BSA, the
plates are
reacted with 1 ug/m1 or less of the monoclonal HER3 antibody or purified
isotype controls, at
ambient temperature for one to two hours. The wells can then be reacted with
either human
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IgG1 or human IgM-specific alkaline phosphatase-conjugated probes. Plates are
then
developed and analyzed so that the isotype of the purified antibody can be
determined.
To demonstrate binding of monoclonal HER3 antibodies to live cells expressing
a HER3
polypeptide, flow cytometry can be used. Briefly, cell lines expressing HER3
(grown under
standard growth conditions) can be mixed with various concentrations of a HER3-
binding
antibody in PBS containing 0.1% BSA and 10% fetal calf serum, and incubated at
4 C for 1
hour. After washing, the cells are reacted with Fluorescein-labeled anti-human
IgG antibody
under the same conditions as the primary antibody staining. The samples can be
analyzed by
FACScan instrument using light and side scatter properties to gate on single
cells. An
alternative assay using fluorescence microscopy may be used (in addition to or
instead of) the
flow cytometry assay. Cells can be stained exactly as described above and
examined by
fluorescence microscopy. This method allows visualization of individual cells,
but may have
diminished sensitivity depending on the density of the antigen.
The antibodies or fragments thereof of the invention can be further tested for
reactivity with a
HER3 polypeptide or antigenic fragment by Western blotting. Briefly, purified
HER3
polypeptides or fusion proteins, or cell extracts from cells expressing HER3
can be prepared
and subjected to sodium dodecyl sulfate polyacrylamide gel electrophoresis.
After
electrophoresis, the separated antigens are transferred to nitrocellulose
membranes, blocked
with 10% fetal calf serum, and probed with the monoclonal antibodies to be
tested. Human
IgG binding can be detected using anti-human IgG alkaline phosphatase and
developed with
BCIP/NBT substrate tablets (Sigma Chem. Co., St. Louis, MO).
A number of readouts can be used to assess the efficacy, and specificity, of
HER3 antibodies
in cell-based assays of ligand-induced heterodimer formation. Activity can be
assessed by one
or more of the following:
(i) Inhibition of ligand-induced heterodimerisation of HER2 with other EGF
family members
in a target cell line, for example MCF-7 breast cancer cells.
Immunoprecipitation of HER2
complexes from cell lysates can be performed with a receptor-specific
antibody, and the
absence/presence of other EGF receptors and their biologically relevant
ligands within the
complex can be analysed following electrophoresis/Western transfer by probing
with
antibodies to other EGF receptors.
(ii) Inhibition of the activation of signaling pathways by ligand-activated
heterodimers.
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Association with HER3 appears key for other members of the EGF family of
receptors to
elicit maximal cellular response following ligand binding. In the case of the
kinase-defective
HER3, HER2 provides a functional tyrosine kinase domain to enable signaling to
occur
following binding of growth factor ligands. Thus, cells co-expressing HER2 and
HER3 can be
treated with ligand, for example heregulin, in the absence and presence of
inhibitor and the
effect on HER3 tyrosine phosphorylation monitored by a number of ways
including
immunoprecipitation of HER3 from treated cell lysates and subsequent Western
blotting using
anti-phosphotyrosine antibodies (see Agus op. cit. for details).
Alternatively, a high-
throughput assay can be developed by trapping HER3 from solubilized lysates
onto the wells
of a 96-well plate coated with an anti-HER3 receptor antibody, and the level
of tyrosine
phosphorylation measured using, for example, europium-labelled anti-
phosphotyrosine
antibodies, as embodied by Waddleton et at., (2002) Anal. Biochem. 309:150-
157.
In a broader extension of this approach, effector molecules known to be
activated downstream
of activated receptor heterodimers, such as mitogen-activated protein kinases
(MAPK) and
Akt, may be analysed directly, by immunoprecipitation from treated lysates and
blotting with
antibodies that detect the activated forms of these proteins, or by analysing
the ability of these
proteins to modify/activate specific substrates.
(iii) Inhibition of ligand-induced cellular proliferation. A variety of cell
lines are known to co-
express combinations of ErbB receptors, for example many breast and prostate
cancer cell
lines. Assays may be performed in 24/48/96-well formats with the readout based
around DNA
synthesis (tritiated thymidine incorporation), increase in cell number
(crystal violet staining)
etc.
A number of readouts can be used to assess the efficacy, and specificity, of
HER3 antibodies
in cell-based assays of ligand-independent homo-and heterodimer formation. For
example,
HER2 overexpression triggers ligand-independent activation of the kinase
domain as a result
of spontaneous dimer formation. Over expressed HER2 generates either homo- or
heterodimers with other HER molecules such as HER1, HER3 and HER4.
Ability of antibodies or fragments thereof to block in vivo growth of tumour
xenografts of
human tumour cell lines whose tumorigenic phenotype is known to be at least
partly
dependent on ligand activation of HER3 heterodimer cell signaling e.g. BxPC3
pancreatic
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cancer cells etc. This can be assessed in immunocompromised mice either alone
or in
combination with an appropriate cytotoxic agent for the cell line in question.
Examples of
functional assays are also described in the Example section below.
Prophylactic and Therapeutic Uses
The present invention provides methods of treating a disease or disorder
associated with the
HER3 signaling pathway by administering to a subject in need thereof an
effective amount of
the antibody or fragment thereof of the invention. In a specific embodiment,
the present
invention provides a method of treating or preventing cancers (e.g., breast
cancer, colorectal
cancer, lung cancer, multiple myeloma, ovarian cancer, liver cancer, gastric
cancer, pancreatic
cancer, acute myeloid leukemia, chronic myeloid leukemia, osteosarcoma,
squamous cell
carcinoma, peripheral nerve sheath tumors, schwannoma, head and neck cancer,
bladder
cancer, esophageal cancer, Barretts esophageal cancer, glioblastoma, clear
cell sarcoma of
soft tissue, malignant mesothelioma, neurofibromatosis, renal cancer,
melanoma, prostate
cancer, benign prostatic hyperplasia (BPH), gynacomastica, and endometriosis)
by
administering to a subject in need thereof an effective amount of the
antibodies or fragments
thereof of the invention. In some embodiments, the present invention provides
methods of
treating or preventing cancers associated with a HER3 signaling pathway by
administering to
a subject in need thereof an effective amount of the antibodies of the
invention.
In a specific embodiment, the present invention provides methods of treating
cancers
associated with a HER3 signaling pathway that include, but are not limited to
breast cancer,
colorectal cancer, lung cancer, multiple myeloma, ovarian cancer, liver
cancer, gastric cancer,
pancreatic cancer, acute myeloid leukemia, chronic myeloid leukemia,
osteosarcoma,
squamous cell carcinoma, peripheral nerve sheath tumors schwannoma, head and
neck cancer,
bladder cancer, esophageal cancer, Barretts esophageal cancer, glioblastoma,
clear cell
sarcoma of soft tissue, malignant mesothelioma, neurofibromatosis, renal
cancer, melanoma,
prostate cancer, benign prostatic hyperplasia (BPH), gynacomastica, and
endometriosis.
The antibodies or fragments thereof of the invention can also be used to treat
or prevent other
disorders associated with aberrant or defective HER3 signaling, including but
are not limited
to respiratory diseases, osteoporosis, osteoarthritis, polycystic kidney
disease, diabetes,
schizophrenia, vascular disease, cardiac disease, non-oncogenic proliferative
diseases,
fibrosis, and neurodegenerative diseases such as Alzheimer's disease.
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Suitable agents for combination treatment with HER3 antibodies include
standard of care
agents known in the art that are able to modulate the ErbB signaling pathway.
Suitable
examples of standard of care agents for HER2 include, but are not limited to
Herceptin and
Tykerb. Suitable examples of standard of care agents for EGFR include, but are
not limited to
Iressa, Tarceva, Erbitux and Vectibix as described above. Other agents that
may be suitable
for combination treatment with HER3 antibodies include, but are not limited to
those that
modulate receptor tyrosine kinases, G-protein coupled receptors, growth/
survival signal
transduction pathways, nuclear hormone receptors, apoptotic pathways, cell
cycle and
angiogenesis.
Diagnostic Uses
In one aspect, the invention encompasses diagnostic assays for determining
HER3 and/or
nucleic acid expression as well as HER3 protein function, in the context of a
biological
sample (e.g., blood, serum, cells, tissue) or from individual afflicted with
cancer, or is at risk
of developing cancer.
Diagnostic assays, such as competitive assays rely on the ability of a
labelled analogue (the
"tracer") to compete with the test sample analyte for a limited number of
binding sites on a
common binding partner. The binding partner generally is insolubilized before
or after the
competition and then the tracer and analyte bound to the binding partner are
separated from
the unbound tracer and analyte. This separation is accomplished by decanting
(where the
binding partner was preinsolubilized) or by centrifuging (where the binding
partner was
precipitated after the competitive reaction). The amount of test sample
analyte is inversely
proportional to the amount of bound tracer as measured by the amount of marker
substance.
Dose-response curves with known amounts of analyte are prepared and compared
with the test
results in order to quantitatively determine the amount of analyte present in
the test sample.
These assays are called ELISA systems when enzymes are used as the detectable
markers. In
an assay of this form, competitive binding between antibodies and HER3
antibodies results in
the bound HER3, preferably the HER3 epitopes of the invention, being a measure
of
antibodies in the serum sample, most particularly, inhibiting antibodies in
the serum sample.
A significant advantage of the assay is that measurement is made of inhibiting
antibodies
directly (i.e., those which interfere with binding of HER3, specifically,
epitopes). Such an
assay, particularly in the form of an ELISA test has considerable applications
in the clinical
environment and in routine blood screening.
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Another aspect of the invention provides methods for determining HER3 nucleic
acid
expression or HER3 activity in an individual to thereby select appropriate
therapeutic or
prophylactic agents for that individual (referred to herein as
"pharmacogenomics").
Pharmacogenomics allows for the selection of agents (e.g., drugs) for
therapeutic or
prophylactic treatment of an individual based on the genotype of the
individual (e.g., the
genotype of the individual examined to determine the ability of the individual
to respond to a
particular agent.)
Yet another aspect of the invention pertains to monitoring the influence of
agents (e.g., drugs)
on the expression or activity of HER3 in clinical trials.
Pharmaceutical Compositions
To prepare pharmaceutical or sterile compositions including antibodies or
fragments thereof,
the antibodies or fragments thereof are mixed with a pharmaceutically
acceptable carrier or
excipient. The compositions can additionally contain one or more other
therapeutic agents that
are suitable for treating or preventing cancer (breast cancer, colorectal
cancer, lung cancer,
multiple myeloma, ovarian cancer, liver cancer, gastric cancer, pancreatic
cancer, acute
myeloid leukemia, chronic myeloid leukemia, osteosarcoma, squamous cell
carcinoma,
peripheral nerve sheath tumors schwannoma, head and neck cancer, bladder
cancer,
esophageal cancer, glioblastoma, clear cell sarcoma of soft tissue, malignant
mesothelioma,
neurofibromatosis, renal cancer, and melanoma, Barretts esophageal cancer,
prostate cancer,
benign prostatic hyperplasia (BPH), gynacomastica, and endometriosis).
Formulations of therapeutic and diagnostic agents can be prepared by mixing
with
physiologically acceptable carriers, excipients, or stabilizers in the form
of, e.g., lyophilized
powders, slurries, aqueous solutions, lotions, or suspensions (see, e.g.,
Hardman et at., (2001)
Goodman and Gilman's The Pharmacological Basis of Therapeutics, McGraw-Hill,
New
York, N.Y.; Gennaro (2000) Remington: The Science and Practice of Pharmacy,
Lippincott,
Williams, and Wilkins, New York, N.Y.; Avis, et at. (eds.) (1993)
Pharmaceutical Dosage
Forms: Parenteral Medications, Marcel Dekker, NY; Lieberman, et al. (eds.)
(1990)
Pharmaceutical Dosage Forms: Tablets, Marcel Dekker, NY; Lieberman, et at.
(eds.) (1990)
Pharmaceutical Dosage Forms: Disperse Systems, Marcel Dekker, NY; Weiner and
Kotkoskie
(2000) Excipient Toxicity and Safety, Marcel Dekker, Inc., New York, N.Y.).
Selecting an administration regimen for a therapeutic depends on several
factors, including the
serum or tissue turnover rate of the entity, the level of symptoms, the
immunogenicity of the
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entity, and the accessibility of the target cells in the biological matrix. In
certain embodiments,
an administration regimen maximizes the amount of therapeutic delivered to the
patient
consistent with an acceptable level of side effects. Accordingly, the amount
of biologic
delivered depends in part on the particular entity and the severity of the
condition being
treated. Guidance in selecting appropriate doses of antibodies, cytokines, and
small molecules
are available (see, e.g., Wawrzynczak (1996) Antibody Therapy, Bios Scientific
Pub. Ltd,
Oxfordshire, UK; Kresina (ed.) (1991) Monoclonal Antibodies, Cytokines and
Arthritis,
Marcel Dekker, New York, N.Y.; Bach (ed.) (1993) Monoclonal Antibodies and
Peptide
Therapy in Autoimmune Diseases, Marcel Dekker, New York, N.Y.; Baert et at.,
(2003) New
Engl. J. Med. 348:601-608; Milgrom et al., (1999) New Engl. J. Med. 341:1966-
1973;
Slamon et at., (2001) New Engl. J. Med. 344:783-792; Beniaminovitz et at.,
(2000) New
Engl. J. Med. 342:613-619; Ghosh et at., (2003) New Engl. J. Med. 348:24-32;
Lipsky et at.,
(2000) New Engl. J. Med. 343:1594-1602).
Determination of the appropriate dose is made by the clinician, e.g., using
parameters or
factors known or suspected in the art to affect treatment or predicted to
affect treatment.
Generally, the dose begins with an amount somewhat less than the optimum dose
and it is
increased by small increments thereafter until the desired or optimum effect
is achieved
relative to any negative side effects. Important diagnostic measures include
those of
symptoms of, e.g., the inflammation or level of inflammatory cytokines
produced.
Actual dosage levels of the active ingredients in the pharmaceutical
compositions of the
present invention may be varied so as to obtain an amount of the active
ingredient which is
effective to achieve the desired therapeutic response for a particular
patient, composition, and
mode of administration, without being toxic to the patient. The selected
dosage level will
depend upon a variety of pharmacokinetic factors including the activity of the
particular
compositions of the present invention employed, or the ester, salt or amide
thereof, the route
of administration, the time of administration, the rate of excretion of the
particular compound
being employed, the duration of the treatment, other drugs, compounds and/or
materials used
in combination with the particular compositions employed, the age, sex,
weight, condition,
general health and prior medical history of the patient being treated, and
like factors known in
the medical arts.
Compositions comprising antibodies or fragments thereof of the invention can
be provided by
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continuous infusion, or by doses at intervals of, e.g., one day, one week, or
1-7 times per
week. Doses may be provided intravenously, subcutaneously, topically, orally,
nasally,
rectally, intramuscular, intracerebrally, or by inhalation. A specific dose
protocol is one
involving the maximal dose or dose frequency that avoids significant
undesirable side effects.
A total weekly dose may be at least 0.05 ilg/kg body weight, at least 0.2
ilg/kg, at least 0.5
ilg/kg, at least 1 ilg/kg, at least 10 ilg/kg, at least 100 ilg/kg, at least
0.2 mg/kg, at least 1.0
mg/kg, at least 2.0 mg/kg, at least 10 mg/kg, at least 25 mg/kg, or at least
50 mg/kg (see, e.g.,
Yang et at., (2003) New Engl. J. Med. 349:427-434; Herold et at., (2002) New
Engl. J. Med.
346:1692-1698; Liu et al., (1999) J. Neurol. Neurosurg. Psych. 67:451-456;
Portielji et al.,
(2003) Cancer Immunol. Immunother. 52:133-144). The desired dose of antibodies
or
fragments thereof is about the same as for an antibody or polypeptide, on a
moles/kg body
weight basis. The desired plasma concentration of the antibodies or fragments
thereof is
about, on a moles/kg body weight basis. The dose may be at least 15 ilg at
least 20 ilg, at least
25 jig, at least 30 jig, at least 35 jig, at least 40 jig, at least 45 jig, at
least 50 jig, at least 55
jig, at least 60 jig, at least 65 jig, at least 70 jig, at least 75 jig, at
least 80 jig, at least 85 jig, at
least 90 jig, at least 95 jig, or at least 100 !lg. The doses administered to
a subject may number
at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, or 12, or more.
For antibodies or fragments thereofof the invention, the dosage administered
to a patient may
be 0.0001 mg/kg to 100 mg/kg of the patient's body weight. The dosage may be
between
0.0001 mg/kg and 20 mg/kg, 0.0001 mg/kg and 10 mg/kg, 0.0001 mg/kg and 5
mg/kg, 0.0001
and 2 mg/kg, 0.0001 and 1 mg/kg, 0.0001 mg/kg and 0.75 mg/kg, 0.0001 mg/kg and
0.5
mg/kg, 0.0001 mg/kg to 0.25 mg/kg, 0.0001 to 0.15 mg/kg, 0.0001 to 0.10 mg/kg,
0.001 to
0.5 mg/kg, 0.01 to 0.25 mg/kg or 0.01 to 0.10 mg/kg of the patient's body
weight.
The dosage of the antibodies or fragments thereof of the invention may be
calculated using the
patient's weight in kilograms (kg) multiplied by the dose to be administered
in mg/kg. The
dosage of the antibodies or fragments thereofof the invention may be 150
jig/kg or less, 125
jig/kg or less, 100 jig/kg or less, 95 jig/kg or less, 90 jig/kg or less, 85
jig/kg or less, 80
jig/kg or less, 75 jig/kg or less, 70 jig/kg or less, 65 jig/kg or less, 60
jig/kg or less, 55 jig/kg
or less, 50 jig/kg or less, 45 jig/kg or less, 40 jig/kg or less, 35 jig/kg or
less, 30 jig/kg or less,
25 jig/kg or less, 20 jig/kg or less, 15 jig/kg or less, 10 jig/kg or less, 5
jig/kg or less, 2.5
jig/kg or less, 2 jig/kg or less, 1.5 jig/kg or less, 1 jig/kg or less, 0.5
jig/kg or less, or 0.5
jig/kg or less of a patient's body weight.
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Unit dose of the antibodies or fragments thereofof the invention may be 0.1 mg
to 20 mg, 0.1
mg to 15 mg, 0.1 mg to 12 mg, 0.1 mg to 10 mg, 0.1 mg to 8 mg, 0.1 mg to 7 mg,
0.1 mg to 5
mg, 0.1 to 2.5 mg, 0.25 mg to 20 mg, 0.25 to 15 mg, 0.25 to 12 mg, 0.25 to 10
mg, 0.25 to 8
mg, 0.25 mg to 7 m g, 0.25 mg to 5 mg, 0.5 mg to 2.5 mg, 1 mg to 20 mg, 1 mg
to 15 mg, 1
mg to 12 mg, 1 mg to 10 mg, 1 mg to 8 mg, 1 mg to 7 mg, 1 mg to 5 mg, or 1 mg
to 2.5 mg.
The dosage of the antibodies or fragments thereofof the invention may achieve
a serum titer of
at least 0.1 jig/ml, at least 0.5 jig/ml, at least 1 jig/ml, at least 2
jig/ml, at least 5 jig/ml, at
least 6 jig/ml, at least 10 jig/ml, at least 15 jig/ml, at least 20 jig/ml, at
least 25 jig/ml, at least
50 jig/ml, at least 100 jig/ml, at least 125 jig/ml, at least 150 jig/ml, at
least 175 jig/ml, at least
200 jig/ml, at least 225 jig/ml, at least 250 jig/ml, at least 275 jig/ml, at
least 300 jig/ml, at
least 325 jig/ml, at least 350 jig/ml, at least 375 jig/ml, or at least 400
jig/m1 in a subject.
Alternatively, the dosage of the antibodies or fragments thereofof the
invention may achieve a
serum titer of at least 0.1 jig/ml, at least 0.5 jig/ml, at least 1 jig/ml, at
least, 2 jig/ml, at least 5
jig/ml, at least 6 jig/ml, at least 10 jig/ml, at least 15 jig/ml, at least 20
µg/ml, at least 25
jig/ml, at least 50 jig/ml, at least 100 jig/ml, at least 125 jig/ml, at least
150 jig/mu, at least
175 jig/ml, at least 200 jig/ml, at least 225 jig/ml, at least 250 jig/ml, at
least 275 jig/ml, at
least 300 jig/ml, at least 325 jig/ml, at least 350 jig/ml, at least 375
jig/ml, or at least 400
jig/ml in the subject.
Doses of antibodies or fragments thereofof the invention may be repeated and
the
administrations may be separated by at least 1 day, 2 days, 3 days, 5 days, 10
days, 15 days,
days, 45 days, 2 months, 75 days, 3 months, or at least 6 months.
An effective amount for a particular patient may vary depending on factors
such as the
condition being treated, the overall health of the patient, the method route
and dose of
administration and the severity of side affects (see, e.g., Maynard et at.,
(1996) A Handbook
of SOPs for Good Clinical Practice, Interpharm Press, Boca Raton, Fla.; Dent
(2001) Good
Laboratory and Good Clinical Practice, Urch Publ., London, UK).
The route of administration may be by, e.g., topical or cutaneous application,
injection or
infusion by intravenous, intraperitoneal, intracerebral, intramuscular,
intraocular, intraarterial,
intracerebrospinal, intralesional, or by sustained release systems or an
implant (see, e.g.,
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Sidman et at., (1983) Biopolymers 22:547-556; Langer et at., (1981) J. Biomed.
Mater. Res.
15:167-277; Langer (1982) Chem. Tech. 12:98-105; Epstein et al., (1985) Proc.
Natl. Acad.
Sci. USA 82:3688-3692; Hwang et at., (1980) Proc. Natl. Acad. Sci. USA 77:4030-
4034; U.S.
Pat. Nos. 6,350,466 and 6,316,024). Where necessary, the composition may also
include a
solubilizing agent and a local anesthetic such as lidocaine to ease pain at
the site of the
injection. In addition, pulmonary administration can also be employed, e.g.,
by use of an
inhaler or nebulizer, and formulation with an aerosolizing agent. See, e.g.,
U.S. Pat. Nos.
6,019,968, 5,985,320, 5,985,309, 5,934,272, 5,874,064, 5,855,913, 5,290,540,
and 4,880,078;
and PCT Publication Nos. WO 92/19244, WO 97/32572, WO 97/44013, WO 98/31346,
and
WO 99/66903, each of which is incorporated herein by reference their entirety.
A composition of the present invention may also be administered via one or
more routes of
administration using one or more of a variety of methods known in the art. As
will be
appreciated by the skilled artisan, the route and/or mode of administration
will vary depending
upon the desired results. Selected routes of administration for antibodies or
fragments
thereofof the invention include intravenous, intramuscular, intradermal,
intraperitoneal,
subcutaneous, spinal or other parenteral routes of administration, for example
by injection or
infusion. Parenteral administration may represent modes of administration
other than enteral
and topical administration, usually by injection, and includes, without
limitation, intravenous,
intramuscular, intraarterial, intrathecal, intracapsular, intraorbital,
intracardiac, intradermal,
intraperitoneal, transtracheal, subcutaneous, subcuticular, intraarticular,
subcapsular,
subarachnoid, intraspinal, epidural and intrasternal injection and infusion.
Alternatively, a
composition of the invention can be administered via a non-parenteral route,
such as a topical,
epidermal or mucosal route of administration, for example, intranasally,
orally, vaginally,
rectally, sublingually or topically. In one embodiment, the antibodies or
fragments thereof of
the invention is administered by infusion. In another embodiment, the
multispecific epitope
binding protein of the invention is administered subcutaneously.
If the antibodies or fragments thereof of the invention are administered in a
controlled release
or sustained release system, a pump may be used to achieve controlled or
sustained release
(see Langer, supra; Sefton, (1987) CRC Crit. Ref Biomed. Eng. 14:20; Buchwald
et at.,
(1980), Surgery 88:507; Saudek et at., (1989) N. Engl. J. Med. 321:574).
Polymeric materials
can be used to achieve controlled or sustained release of the therapies of the
invention (see
e.g., Medical Applications of Controlled Release, Langer and Wise (eds.), CRC
Pres., Boca
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Raton, Fla. (1974); Controlled Drug Bioavailability, Drug Product Design and
Performance,
Smolen and Ball (eds.), Wiley, New York (1984); Ranger and Peppas, (1983) J.
Macromol.
Sci. Rev. Macromol. Chem. 23:61; see also Levy et al., (1985) Science 228:190;
During et
at., (1989) Ann. Neurol. 25:351; Howard et al., (1989) J. Neurosurg. 7 1:105);
U.S. Pat. No.
5,679,377; U.S. Pat. No. 5,916,597; U.S. Pat. No. 5,912,015; U.S. Pat. No.
5,989,463; U.S.
Pat. No. 5,128,326; PCT Publication No. WO 99/15154; and PCT Publication No.
WO
99/20253. Examples of polymers used in sustained release formulations include,
but are not
limited to, poly(2-hydroxy ethyl methacrylate), poly(methyl methacrylate),
poly(acrylic acid),
poly(ethylene-co-vinyl acetate), poly(methacrylic acid), polyglycolides (PLG),
polyanhydrides, poly(N-vinyl pyrrolidone), poly(vinyl alcohol),
polyacrylamide,
poly(ethylene glycol), polylactides (PLA), poly(lactide-co-glycolides) (PLGA),
and
polyorthoesters. In one embodiment, the polymer used in a sustained release
formulation is
inert, free of leachable impurities, stable on storage, sterile, and
biodegradable. A controlled
or sustained release system can be placed in proximity of the prophylactic or
therapeutic
target, thus requiring only a fraction of the systemic dose (see, e.g.,
Goodson, in Medical
Applications of Controlled Release, supra, vol. 2, pp. 115-138 (1984)).
Controlled release systems are discussed in the review by Langer, (1990),
Science 249:1527-
1533). Any technique known to one of skill in the art can be used to produce
sustained release
formulations comprising one or more antibodies or fragments thereofof the
invention. See,
e.g., U.S. Pat. No. 4,526,938, PCT publication WO 91/05548, PCT publication WO
96/20698,
Ning et al., (1996), Radiotherapy & Oncology 39:179-189, Song et al., (1995)
PDA Journal
of Pharmaceutical Science & Technology 50:372-397, Cleek et at., (1997) Pro.
Int'l. Symp.
Control. Rel. Bioact. Mater. 24:853-854, and Lam et at., (1997) Proc. Int'l.
Symp. Control
Rel. Bioact. Mater. 24:759-760, each of which is incorporated herein by
reference in their
entirety.
If the antibodies or fragments thereof of the invention are administered
topically, they can be
formulated in the form of an ointment, cream, transdermal patch, lotion, gel,
shampoo, spray,
aerosol, solution, emulsion, or other form well-known to one of skill in the
art. See, e.g.,
Remington's Pharmaceutical Sciences and Introduction to Pharmaceutical Dosage
Forms, 19th
ed., Mack Pub. Co., Easton, Pa. (1995). For non-sprayable topical dosage
forms, viscous to
semi-solid or solid forms comprising a carrier or one or more excipients
compatible with
topical application and having a dynamic viscosity, in some instances, greater
than water are
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typically employed. Suitable formulations include, without limitation,
solutions, suspensions,
emulsions, creams, ointments, powders, liniments, salves, and the like, which
are, if desired,
sterilized or mixed with auxiliary agents (e.g., preservatives, stabilizers,
wetting agents,
buffers, or salts) for influencing various properties, such as, for example,
osmotic pressure.
Other suitable topical dosage forms include sprayable aerosol preparations
wherein the active
ingredient, in some instances, in combination with a solid or liquid inert
carrier, is packaged
in a mixture with a pressurized volatile (e.g., a gaseous propellant, such as
freon) or in a
squeeze bottle. Moisturizers or humectants can also be added to pharmaceutical
compositions
and dosage forms if desired. Examples of such additional ingredients are well-
known in the
art.
If the compositions comprising antibodies or fragments thereof are
administered intranasally,
it can be formulated in an aerosol form, spray, mist or in the form of drops.
In particular,
prophylactic or therapeutic agents for use according to the present invention
can be
conveniently delivered in the form of an aerosol spray presentation from
pressurized packs or
a nebuliser, with the use of a suitable propellant (e.g.,
dichlorodifluoromethane,
trichlorofluoromethane, dichlorotetrafluoroethane, carbon dioxide or other
suitable gas). In
the case of a pressurized aerosol the dosage unit may be determined by
providing a valve to
deliver a metered amount. Capsules and cartridges (composed of, e.g., gelatin)
for use in an
inhaler or insufflator may be formulated containing a powder mix of the
compound and a
suitable powder base such as lactose or starch.
Methods for co-administration or treatment with a second therapeutic agent,
e.g., a cytokine,
steroid, chemotherapeutic agent, antibiotic, or radiation, are known in the
art (see, e.g.,
Hardman et at., (eds.) (2001) Goodman and Gilman's The Pharmacological Basis
of
Therapeutics, 10th ed., McGraw-Hill, New York, N.Y.; Poole and Peterson
(eds.) (2001)
Pharmacotherapeutics for Advanced Practice :A Practical Approach, Lippincott,
Williams &
Wilkins, Phila., Pa.; Chabner and Longo (eds.) (2001) Cancer Chemotherapy and
Biotherapy,
Lippincott, Williams & Wilkins, Phila., Pa.). An effective amount of
therapeutic may decrease
the symptoms by at least 10%; by at least 20%; at least about 30%; at least
40%, or at least
50%.
Additional therapies (e.g., prophylactic or therapeutic agents), which can be
administered in
combination with the antibodies or fragments thereofof the invention may be
administered
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less than 5 minutes apart, less than 30 minutes apart, 1 hour apart, at about
1 hour apart, at
about 1 to about 2 hours apart, at about 2 hours to about 3 hours apart, at
about 3 hours to
about 4 hours apart, at about 4 hours to about 5 hours apart, at about 5 hours
to about 6 hours
apart, at about 6 hours to about 7 hours apart, at about 7 hours to about 8
hours apart, at about
8 hours to about 9 hours apart, at about 9 hours to about 10 hours apart, at
about 10 hours to
about 11 hours apart, at about 11 hours to about 12 hours apart, at about 12
hours to 18 hours
apart, 18 hours to 24 hours apart, 24 hours to 36 hours apart, 36 hours to 48
hours apart, 48
hours to 52 hours apart, 52 hours to 60 hours apart, 60 hours to 72 hours
apart, 72 hours to 84
hours apart, 84 hours to 96 hours apart, or 96 hours to 120 hours apart from
the antibodies or
fragments thereofof the invention. The two or more therapies may be
administered within one
same patient visit.
The antibodies or fragments thereofof the invention and the other therapies
may be cyclically
administered. Cycling therapy involves the administration of a first therapy
(e.g., a first
prophylactic or therapeutic agent) for a period of time, followed by the
administration of a
second therapy (e.g., a second prophylactic or therapeutic agent) for a period
of time,
optionally, followed by the administration of a third therapy (e.g.,
prophylactic or therapeutic
agent) for a period of time and so forth, and repeating this sequential
administration, i.e., the
cycle in order to reduce the development of resistance to one of the
therapies, to avoid or
reduce the side effects of one of the therapies, and/or to improve the
efficacy of the therapies.
In certain embodiments, the antibodies or fragments thereofof the invention
can be formulated
to ensure proper distribution in vivo. For example, the blood-brain barrier
(BBB) excludes
many highly hydrophilic compounds. To ensure that the therapeutic compounds of
the
invention cross the BBB (if desired), they can be formulated, for example, in
liposomes. For
methods of manufacturing liposomes, see, e.g., U.S. Pat. Nos. 4,522,811;
5,374,548; and
5,399,331. The liposomes may comprise one or more moieties which are
selectively
transported into specific cells or organs, thus enhance targeted drug delivery
(see, e.g.,
Ranade, (1989) J. Clin. Pharmacol. 29:685). Exemplary targeting moieties
include folate or
biotin (see, e.g., U.S. Pat. No. 5,416,016 to Low et al); mannosides (Umezawa
et at., (1988)
Biochem. Biophys. Res. Commun. 153:1038); antibodies (Bloeman et at., (1995)
FEBS Lett.
357:140; Owais et al., (1995) Antimicrob. Agents Chemother. 39:180);
surfactant protein A
receptor (Briscoe et at., (1995) Am. J. Physiol. 1233:134); p 120 (Schreier et
at, (1994) J.
Biol. Chem. 269:9090); see also K. Keinanen; M. L. Laukkanen (1994) FEBS Lett.
346:123;
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PCT/1B2012/056956
J. J. Killion; I. J. Fidler (1994) Immunomethods 4:273.
The invention provides protocols for the administration of pharmaceutical
composition
comprising antibodies or fragments thereofof the invention alone or in
combination with other
therapies to a subject in need thereof The therapies (e.g., prophylactic or
therapeutic agents)
of the combination therapies of the present invention can be administered
concomitantly or
sequentially to a subject. The therapy (e.g., prophylactic or therapeutic
agents) of the
combination therapies of the present invention can also be cyclically
administered. Cycling
therapy involves the administration of a first therapy (e.g., a first
prophylactic or therapeutic
agent) for a period of time, followed by the administration of a second
therapy (e.g., a second
prophylactic or therapeutic agent) for a period of time and repeating this
sequential
administration, i.e., the cycle, in order to reduce the development of
resistance to one of the
therapies (e.g., agents) to avoid or reduce the side effects of one of the
therapies (e.g., agents),
and/or to improve, the efficacy of the therapies.
The therapies (e.g., prophylactic or therapeutic agents) of the combination
therapies of the
invention can be administered to a subject concurrently. The term
"concurrently" is not
limited to the administration of therapies (e.g., prophylactic or therapeutic
agents) at exactly
the same time, but rather it is meant that a pharmaceutical composition
comprising antibodies
or fragments thereofof the invention are administered to a subject in a
sequence and within a
time interval such that the antibodies of the invention can act together with
the other
therapy(ies) to provide an increased benefit than if they were administered
otherwise. For
example, each therapy may be administered to a subject at the same time or
sequentially in
any order at different points in time; however, if not administered at the
same time, they
should be administered sufficiently close in time so as to provide the desired
therapeutic or
prophylactic effect. Each therapy can be administered to a subject separately,
in any
appropriate form and by any suitable route. In various embodiments, the
therapies (e.g.,
prophylactic or therapeutic agents) are administered to a subject less than 15
minutes, less
than 30 minutes, less than 1 hour apart, at about 1 hour apart, at about 1
hour to about 2 hours
apart, at about 2 hours to about 3 hours apart, at about 3 hours to about 4
hours apart, at about
4 hours to about 5 hours apart, at about 5 hours to about 6 hours apart, at
about 6 hours to
about 7 hours apart, at about 7 hours to about 8 hours apart, at about 8 hours
to about 9 hours
apart, at about 9 hours to about 10 hours apart, at about 10 hours to about 11
hours apart, at
about 11 hours to about 12 hours apart, 24 hours apart, 48 hours apart, 72
hours apart, or 1
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week apart. In other embodiments, two or more therapies (e.g., prophylactic or
therapeutic
agents) are administered to a within the same patient visit.
The prophylactic or therapeutic agents of the combination therapies can be
administered to a
subject in the same pharmaceutical composition. Alternatively, the
prophylactic or therapeutic
agents of the combination therapies can be administered concurrently to a
subject in separate
pharmaceutical compositions. The prophylactic or therapeutic agents may be
administered to
a subject by the same or different routes of administration.
The invention having been fully described, it is further illustrated by the
following examples
and claims, which are illustrative and are not meant to be further limiting.
Examples
Example 1: Methods, Materials and Screening for Antibodies
(i) Cell Lines
SK-Br-3, BT-474 and MCF-7 cell lines were purchased from ATCC and routinely
maintained
in growth media supplemented with 10% fetal bovine serum (FBS).
(ii) Generation of Recombinant Human, Cyno, Mouse and Rat HER3 Vectors
Murine HER3 extracellular domain was PCR amplified from mouse brain cDNA
(Clontech)
and sequence verified by comparison with Refseq NM 010153. Rat HER3 ECD was
reverse
transcribed from Rat-2 cell mRNA and sequence verified by comparison with
NMO17218.
Cynomolgus HER3 cDNA template was generated using RNA from various cyno
tissues
(Zyagen Laboratories), and the RT-PCR product cloned into pCR(D-TOPO-XL
(Invitrogen)
prior to sequencing of both strands. Human HER3 was derived from a human fetal
brain
cDNA library (Source) and sequence verified by comparison with NM 001982.
To generate tagged recombinant proteins, human, mouse, rat and cyno HER3 was
PCR
amplified using Pwo Taq polymerase (Roche Diagnostics). Amplified PCR products
were gel
purified and cloned into a pDonR201 (Invitrogen) gateway entry vector that had
previously
been modified to include an in-frame N-terminal CD33 leader sequence and a C-
terminal
TAG, e.g., FLAG TAG. The TAG allows purification of monomeric proteins via an
anti-
TAG monoclonal antibody. The target genes were flanked with AttB1 and AttB2
allowing
recombination into Gateway adapted proprietary destination vectors (e.g.,
pcDNA3.1) using
the Gateway cloning technology (Invitrogen). Recombination reactions were
performed
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using a Gateway LR reaction with proprietary destination vectors containing a
CMV promoter
to create the TAG expression vectors, although any commercially available
vector can be
used.
Further recombinant HER3 proteins were generated that fused the HER3 ECD
upstream of a
C-terminal Factor X cleavage site and the human IgG hinge and Fc domain to
create an Fc-
tagged protein. To achieve this, the various HER3 ECD's were PCR amplified and
cloned into
a vector (e.g., pcDNA3.1) modified to contain an in-frame C-terminal fusion of
Factor X site-
Hinge-hFc. The generated open reading frame was flanked with AttB1 and AttB2
sites for
further cloning with the Gateway recombinant cloning technology (Invitrogen).
An LR
Gateway reaction was used to transfer HER3-Fc into a destination expression
construct
containing a CMV promoter. HER3 point mutation expression constructs were
generated
using standard site directed mutagenesis protocols and the resultant vectors
sequence verified.
Table 3: Generation of HER3 expression vectors. HER3 amino acid numbering is
based
on NP 001973 (human), NP 034283 (mouse) and NP 058914 (rat).
Name Description
Hu HER3 CD33-[Human HER3, residues 20-6401-TAG
Mu HER3 CD33-[Murine HER3, residues 20-6431-TAG
Rat HER3 CD33-[Rat HER3, residues 20-6431-TAG
Cyno HER3 CD33-[Cyno HER3, residues 20-6431-TAG
HER3 D1-2 CD33-[Human HER3, residues 20-3291-TAG
HER3 D2 CD33-[Human HER3, residues 185-3291- TAG
HER3 D3-4 CD33-[Human HER3, residues 330-6431- TAG
HER3 D3 CD33-[Human HER3, residues 330-4951- TAG
HER3 D4 CD33-[Human HER3, residues 496-6431- TAG
Hu HER3-Fc [Human HER3, residues 1-6431-Fc
Mu HER3-Fc [Murine HER3, residues 1-6431-Fc
Cyno HER3-Fc [Cyno HER3, residues 1-6431-Fc
Rat HER3-Fc [Rat HER3, residues 1-6431-Fc
HER3 D2-Fc [Human HER3 residues 207-3291-Fc
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(iii) Expression of Recombinant HER3 Proteins
The desired HER3 recombinant proteins were expressed in HEK293 derived cell
lines
previously adapted to suspension culture and grown in a Novartis proprietary
serum-free
medium. Small scale expression verification was undertaken in transient 6-well-
plate
transfection assays on the basis of lipofection. Large-scale protein
production via transient
transfection and was performed at the 10- 20 L scale in the WaveTM bioreactor
system (Wave
Biotech). DNA Polyethylenimine (Polysciences) was used as a plasmid carrier at
a ratio of 1:3
(w:w). The cell culture supernatants were harvested 7-10 days post
transfection and
concentrated by cross-flow filtration and diafiltration prior to purification.
(iv) Tagged Protein Purification
Recombinant tagged HER3 proteins (e.g., TAG-HER3) were purified by collecting
the cell
culture supernatant and concentrating 10-fold by cross-flow filtration with a
10 kDa cut off
filter (Fresenius). An anti-TAG column was prepared by coupling an anti-TAG
monoclonal
antibody to CNBr activated Sepharose 4B at a final ratio of 10 mg antibody per
mL of resin.
Concentrated supernatant was applied to a 35m1 anti-Tag column at a flow rate
of 1- 2 mL/
minute. After base-line washing with PBS, bound material was eluted with 100
mM glycine
(pH 2.7), neutralized and sterile filtered. Protein concentrations were
determined by
measuring the absorbance at 280 nm and converting using a theoretical factor
of 0.66 AU/ mg.
The purified protein was finally characterized by SDS-PAGE, N-terminal
sequencing and LC-
MS.
(v) Fc Tag Purification
Concentrated cell culture supernatant was applied to a 50 ml Protein A
Sepharose Fast Flow
column at a flow rate of 1 ml/min. After baseline washing with PBS, the column
was washed
with 10 column volumes of 10 mM NaH2PO4/ 30% (v/v) Isopropanol, pH 7.3
followed by 5
column volumes of PBS. Finally, bound material was eluted with 50 mM
Citrate/140 mM
NaC1 (pH 2.7), neutralized and sterile filtered.
(vi) HuCAL GOLD OR PLATINUM Pannings
For the selection of antibodies recognizing human HER3 multiple panning
strategies were
employed. Therapeutic antibodies against human HER3 protein were generated by
selection
of clones having high binding affinities, using as the source of antibody
variant proteins a
commercially available phage display library, the MorphoSys HuCAL GOLD or
Platinum
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library. The phagemid library is based on the HuCAL concept (Knappik et at.,
(2000) J Mol
Biol 296:57-86) and employs the CysDisplay technology for displaying the Fab
on the
phage surface (W001/05950 to Lohning).
For the isolation of anti-HER3 antibodies, standard as well as RapMAT panning
strategies
were performed using solid phase, solution, whole cell and differential whole
cell panning
approaches.
(vii) Solid Phase Panning
To identify anti-HER3 antibodies a variety of solid phase panning strategies
were performed
using differing recombinant HER3 proteins. To perform each round of solid
phase panning,
Maxisorp plates (Nunc) were coated with HER3 protein. Tagged proteins were
either captured
using plates previously coated with anti-Fc (goat or mouse anti-human IgG,
Jackson Immuno
Research), anti-Tag antibody or via passive adsorption. The coated plates were
washed with
PBS and blocked. Coated plates were washed twice with PBS prior to the
addition of HuCAL
GOLD or Platinum phage-antibodies for 2 hours at room temperature on a
shaker. Bound
phages were eluted were added to E. coli TG-land incubated for phage
infection.
Subsequently infected bacteria were isolated and plated on agar plates.
Colonies were scraped
off the plates and phages were rescued and amplified. Each HER3 panning
strategy comprised
of individual rounds of panning and contained unique antigens, antigen
concentrations and
washing stringency.
(viii) Solution Phase Panning
Each round of solution phase panning was performed using various biotinylated
recombinant
HER3 proteins in the presence or absence of neuregulin 1-131 (R&D Systems).
Proteins were
biotinylated using the EZ-link sulfo-NHS-LC biotinylation kit (Pierce)
according to the
manufacturers instructions. 800 1 of Streptavidin linked magnetic beads
(Dynabeads, Dynal)
were washed once with PBS and blocked overnight with Chemiblocker (Chemicon).
HuCAL
GOLD or Platinum phage-antibodies and the appropriate biotinylated HER3 were
incubated in a reaction tube. Streptavidin magnetic beads were added for 20
minutes and were
collected with a magnetic particle separator (Dynal). Bound phages were eluted
from the
Dynabeads by adding DTT containing bufferto each tube and added to E. coli TG-
1. Phage
infection was performed in an identical manner to that described in solid
phase panning. Each
HER3 panning strategy comprised of individual rounds of panning and contained
unique
antigens, antigen concentrations and washing stringency. In order to isolate
antibodies
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targeting a specific epitope, competition pannings were performed. In these
panning strategies
HER3 was incubated and pre-blocked with a reference antibody prior to addition
of HuCAL
GOLD or Platinum phage-antibodies. As an alternative strategy reference
antibodies were
used to specifically elute phage-antibodies complexed with HER3.
(ix) Cell based panning
For cell pannings, HuCAL GOLD or Platinum phage-antibodies were incubated
with
approximately 107 cells on a rotator for 2 hours at room temperature, followed
by
centrifugation.. The cell pellet was isolated phages were eluted from the
cells The supernatant
was collected and added to E. coli TG-1 culture continued by the process
described above.
Two cell based strategies were employed to identify anti-HER3 antibodies:
a) Whole cell panning: In this strategy a variety of intact cell lines were
used as the
antigens.
b) Differential whole cell panning: In this strategy the antigens sequentially
consisted of
cells and recombinant HER3 proteins. The cell based pannings were performed as
described above whilst solid phase panning protocols were employed when
recombinant proteins were utilized as antigens. The washes were conducted
using PBS
(2-3X) and PBST (2-3X).
(x) RapMATTm library generation and pannings
In order to increase antibody binding affinity whilst maintaining library
diversity the second
round output of both solution and solid phase pannings were entered into the
RapMATTm
process whilst the third round output of the whole cell and differential whole
cell panning
strategies were entered (Prassler et al., (2009) Immunotherapy; 1: 571-583).
RapMATTm
libraries were generated by sub-cloning Fab-encoding inserts of phages
selected via panning
into the display vector pMORPH 25 bla LHCand were further digested to either
generate H-
CDR2 RapMATTm libraries and L-CDR3 RapMATTm libraries by using specific
restriction
enzymes. The inserts were replaced with TRIM maturation cassettes (Virnekas et
al., (1994)
Nucleic Acids Research 22:5600- 5607) for H-CDR2 or L-CDR3 according to pool
composition. Library sizes were estimated to range between 8x106 -1x108
clones. RapMAT
antibody-phage were produced and subjected to two further rounds of solution,
solid phase or
cell based panning using the experimental methods described previously.
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This extensive panning strategy, involving an iterative refinement of library
design was
specifically developed to bias screening away from pure ligand-competitive
antibodies by
including ligand-blocking antibodies directly in the pannings.Secondly, the
FAB to IgG
conversion process was adapted to maximize the recovery of candidate clones
and ensure that
all selective binders were profiled in functional assays. From 44 initial
pannings, yielding
around 28 families of specific Her3 binding antibodies, only three antibody
families displayed
the desired property of blocking both ligand-dependent and independent signal
transduction.
Family A that binds isolated domains 1-2 and 2 of Her3. Family B that binds
isolated domains
3-4, but not 4 alone; and family C, which binds domain 3.
Example 2: Transient expression of anti-HER3 IgG's
Suspension adapted HEK293-6E cells were cultivated in a BioWave20. The cells
were
transiently transfected with the relevant sterile DNA: PEI-MIX and further
cultivated. After
transfection, cells were removed by crossflow filtration using Fresenius
filters. The cell free
material was concentrated with crossflow filtration using a cut off filter
(Fresenius) and the
concentrate was sterile filtered through a stericup filter. The sterile
supernatant was stored at
4 C.
Example 3: Purification of anti-HER3 IgG
The purification of IgG was performed on a AKTA 100 explorer Air
chromatography system
in a cooling cabinet, using a XK16/20 column with 25 mL of self-packed
MabSelect SuRe
resin (all GE Healthcare). All flow rates were 3.5 mL/min, except for loading,
at a pressure
limit of 5 bar. The column was equilibrated with 3 column volumes of PBS prior
to loading
the filtered fermentation supernatant. The column was washed with PBS. IgG was
eluted with
a pH gradient, starting at citrate/NaC1 (pH 4.5), going linearly down to
citrate/NaC1 (pH 2.5),
followed by a constant step of the same pH 2.5 buffer. The IgG containing
fractions were
pooled and immediately neutralized and sterile filtered (Millipore Steriflip,
0.22 um). 0D280
was measured and the protein concentration calculated based on the sequence
data. The pools
were separately tested for aggregation (SEC-MALS) and purity (SDS-PAGE and
MS).
Example 4: Expression and Purification of HuCALO-Fab Antibodies in E. coli
Expression of Fab fragments encoded by pMORPHOX9 Fab MH in TG-1 cells was
carried
out in shaker flask cultures using YT medium supplemented with
chloramphenicol. Cultures
were shaken until the OD600nm reached 0.5. Expression was induced by addition
of IPTG
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(isopropyl-B-D-thiogalactopyranoside). Cells were disrupted using lysozyme.
His6-tagged Fab
fragments were isolated via IMAC (Bio-Rad). Buffer exchange to lx Dulbecco's
PBS (pH
7.2) was performed using PD10 columns. Samples were sterile filtered. Protein
concentrations
were determined by UV-spectrophotometry. The purity of the samples was
analyzed in
denaturing, reducing 15% SDS-PAGE. The homogeneity of Fab preparations was
determined
in native state by size exclusion chromatography (HP-SEC) with calibration
standards.
Example 5: HER3 Antibody Affinity (KD) Measurements by Solution Equilibrium
Titration (SET)
Affinity determination in solution was essentially performed as previously
described (Friguet
et at., (1985) J Immunol Methods 77:305-19). In order to improve the
sensitivity and accuracy
of the SET method, it was transferred from classical ELISA to ECL based
technology (Haenel
et at., (2005) Anal biochem 339:182-84).
Unlabeled HER3-Tag (human, rat, mouse or cyno) described previously was used
for affinity
determination by SET.
The data was evaluated with XLfit software (ID Business Solutions) applying
customized
fitting models. For KD determination of each IgG the following model was used
(modified
according to Piehler, et at (Piehler et at., (1997) J Immunol Methods 201:189-
206).
( ( õ,2 \
x+ jIgG j+ KD ii(x +[IgG]+ K ,)2 r 1
x jIG j
2B max [IgG] 2 4 g
i
Y ¨ r ___ 1
[IgG] 2 2[IgG]
\ i
[IgG]: applied total IgG concentration
x: applied total soluble antigen concentration (binding sites)
Bmax: maximal signal of IgG without antigen
KD: affinity
Example 6: Antibody Cell Binding Determination by FACS
The binding of antibodies to endogenous human antigen expressed on human
cancer cells was
accessed by FACS. In order to determine antibody EC50 values SK-Br-3 cells
were harvested
with accutase and diluted to 1 x106 cells/mL in FACS buffer (PBS/ 3% FBS/ 0.2%
NaN3). 1
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x105 cells/ well were added to each well of a 96-well plate (Nunc) and
centrifuged at 210 g for
minutes at 4 C before removing the supernatant. Serial dilutions of test
antibodies (diluted
in 1:4 dilution steps with FACS buffer) were added to the pelleted cells and
incubated for 1
hour on ice. The cells were washed and pelleted three times with 100 iut FACS
buffer. PE
5 conjugated goat anti-human IgG (Jackson ImmunoResearch) diluted 1/200
with FACS buffer
were added to the cells and incubated on ice for 1 hour. Additional washing
steps were
performed three times with 100 iut FACS buffer followed by centrifugation
steps at 210 g for
5 minutes at 4 C. Finally, cells were resuspended in 200 iut FACS buffer and
fluorescence
values were measured with a FACSArray (BD Biosciences). The amount of cell
surface
bound anti-HER3 antibody was assessed by measuring the mean channel
fluorescence.
Example 7: HER3 Domain Binding
96-well Maxisorp plates (Nunc) were coated overnight with 200 ng of the
appropriate
recombinant human protein (HER3-Tag, D1-2- Tag, D2- Tag, D3-4- Tag, D4- Tag,
and a
tagged irrelevant control protein). All wells were then washed with PBS/ 0.1%
Tween-20,
blocked with PBS/ 1% BSA/ 0.1% Tween-20 and washed with PBS/ 0.1% Tween-20.
Anti-
HER3 antibodies were added to the relevant wells up to a final concentration
of 10 g/mL and
incubated at room temperature. Plates were washed with PBS/ 0.1% Tween-20
prior to the
addition of the appropriate peroxidase linked detection antibody diluted
1/10000 in PBS/ 1%
BSA/ 0.1% Tween-20. The detection antibodies used were goat anti-mouse
(Pierce, 31432),
rabbit anti-goat (Pierce, 31402) and goat anti-human (Pierce, 31412). Plates
were incubated at
room temperature before washing with PBS/ 0.1% Tween-20. 100 1 TMB (3,3',
5,5'
tetramethyl benzidine) substrate solution (BioFx) was added to all wells
before stopping the
reaction with 50 12.5% H2504. The extent of HER3 antibody binding to each
recombinant
protein was determined by measuring the 0D450 using a SpectraMax plate reader
(Molecular
Devices). Where appropriate, dose response curves were analzyed using Graphpad
Prism.
Example 8: X-ray crystallographic structure determination of the human HER3/
M0R12604 Fab complex
The present example presents the crystal structure of HER3 bound to the Fab
fragment of
M0R12604 determined at 3.38 A resolution. Tagged human HER3 extracellular
domainwas
further purified on a HiLoad 26/60 Superdex 200 PrepGrade column (GE
Healthcare)
equilibrated in PBS (pH 7.3). M0R12604 Fab was expressed in E. coli and
purified as
previously described. HER3/M0R12604-Fab complex was prepared by mixing excess
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M0R12604 Fab with tagged HER3 in a molar ratio of 2:1 (concentration estimated
by LCUV
methods) and purifying the complex on a Superdex 200 10/300 column (GE
Healthcare)
equilibrated in 25 mM Tris (pH 7.5), 150 mM NaCl. Peak fractions were analyzed
by SDS-
PAGE and LCMS. Fractions containing both HER3 and Fab in an approximate
equimolar
ratio were pooled and concentrated to 10 mg/ml. HER3/MOR12604 crystals were
grown at
293K by sitting drop vapor diffusion from drops containing 150 nl HER3/
M0R12604
complex and 150 nl of reservoir solution (200 mM di-potassium hydrogen
phosphate and 20%
PEG 3350). Crystals were transferred to 200 mM di-potassium hydrogen
phosphate, 25%
PEG 3350 and 15% glycerol and flash cooled in liquid nitrogen.
Data were collected at beamline 17-ID at the Advanced Photon Source (Argonne
National
Laboratory). HER3/M0R12604 Fab complex data were processed and scaled at 3.38A
using
autoPROC (Global Phasing, LTD) in space group P212121 with cell dimensions
a=56.15,
b=174.71, c=186.64 A, with good statistics. The HER3/ M0R12604 Fab structure
was solved
by molecular replacement using Phaser (McCoy et at., (2007) J. Appl. Cryst.
40:658-674)
with the published HER3 ECD structure lmb6 and a proprietary Fab as search
models. The
final model, which contains 1 molecule of the HER3/M0R12604 Fab complex per
asymmetric unit, was built in COOT (Emsley & Cowtan (2004) Acta Cryst. 60:2126-
2132)
and refined to R and Rfree values of 19.9 and 23.3%, respectively, with an
rmsd of 0.008 A and
1.190 for bond lengths and bond angles, respectively, using BUSTER (Global
Phasing, LTD).
Residues of HER3 that contain atoms within 5A of any atom in M0R12604 Fab as
identified
in PyMOL (Schrodinger, LLC) are listed in Tables 5 and 6.
Example 9: Phospho-HER3 in vitro cell assays.
MCF-7 cells were routinely maintained in DMEM/F12, 15mM HEPES, L-glutamine,
10%
FBS, BT474 in DMEM, 10% FBS and SK-Br-3 in McCoy's 5a, 10% FBS, 1.5mM L-
glutamine. Sub-confluent cells were trypsinized, washed with PBS and diluted
to 5 x105 cells/
mL. 100 pi, of cell suspension was then added to each well of a 96-well flat
bottomed plate
(Nunc) to give a final density of 5x 104 cells/ well. MCF7 cells were allowed
to attach for
approximately 3 hours before the media was exchanged for starvation media
containing 0.5%
FBS. All plates were then incubated overnight at 37 C prior to treatment with
the appropriate
concentration of HER3 antibodies for 80 minutes at 37 C. MCF7 cells were
treated with
5Ong/mL NRG1 for the final 20 minutes to stimulate HER3 and AKT
phosphorylation whilst
BT474/ SK-Br-3 cells required no additional stimulation. All media was gently
aspirated and
the cells washed with ice-cold PBS containing 1mM CaC12 and 0.5 mM MgC12
(Gibco). The
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cells were lysed by adding 50 uL ice-cold lysis buffer (20 mM Tris (pH8.0)/
137 mM NaC1/
10% Glycerol/ 2mM EDTA/ 1% NP-40/ 1 mM sodium orthovanadate/ lx Phospho-Stop/
lx
Complete mini protease inhibitors (Roche)! 0.1mM PMSF) and incubated on ice
with shaking
for 30 minutes. Lysates were then collected and spun at 1800 g for 15 minutes
at 4 C to
remove cell debris.
HER3 capture plates were generated using a carbon plate (Mesoscale Discovery)
coated
overnight at 4 C with 20 ut, of 4 [tg/mL MAB3481 capture antibody (R&D
Systems) diluted
in PBS and subsequently blocked with 3% bovine serum albumin in lx Tris buffer
(Mesoscale
Discovery)/ 0.1% Tween-20. HER3 was captured by adding the appropriate amount
of lysate
and incubating the plate at room temperature for one hour with shaking before
the lysate was
aspirated and the wells washed with lx Tris buffer (Mesoscale Discovery)/ 0.1%
Tween-20.
Phosphorylated HER3 was detected using 1:8000 anti-pY1197 antibody (Cell
Signaling)
prepared in 3% milk/ lx Tris/ 0.1% Tween-20 by incubating with shaking at room
temperature for 1 hour. The wells were washed four times with lx Tris/ 0.1%
Tween-20 and
phosphorylated proteins were detected by incubating with S-Tag labelled goat
anti-rabbit Ab
(#R32AB) diluted in 3% blocking buffer for one hour at room temperature. Each
well was
aspirated and washed four times with lx Tris/ 0.1% Tween-20 before adding 20
ut, of Read
buffer T with surfactant (Mesoscale Discovery) and the signal quantified using
a Mesoscale
Sector Imager.
Example 10: Phospho-Akt (S473) in vitro cell assays.
Sub-confluent MCF7, SK-Br-3 and BT-474 cells were grown in complete media were
harvested with accutase (PAA Laboratories) and resuspended in the appropriate
growth media
at a final concentration of 5x 105 cells/ mL. 1004, of cell suspension was
then added to each
well of a 96-well flat bottomed plate (Nunc) to yield a final density of 5x
104 cells/ well.
MCF7 cells were allowed to attach for approximately 3 hours before the media
was
exchanged for starvation media containing 0.5% FBS. All plates were then
incubated
overnight at 37 C prior to treatment with the appropriate concentration of
HER3 antibodies
for 80 minutes at 37 C. MCF7 cells were treated with 50 ng/mL NRG1 for the
final 20
minutes to stimulate HER3 and AKT phosphorylation whilst SK-Br-3 cells
required no
additional stimulation. All media was gently aspirated and the cells washed
with ice-cold PBS
containing 1mM CaC12 and 0.5 mM MgC12 (Gibco). The cells were lysed by adding
50 ut,
ice-cold lysis buffer (20 mM Tris (pH8.0)/ 137 mM NaC1/ 10% Glycerol/ 2mM
EDTA/ 1%
NP-40/ 1 mM sodium orthovanadate/ Aprotinin (10 g/mL)/ Leupeptin (10 g/mL))
and
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incubated on ice with shaking for 30 minutes. Lysates were then collected and
spun at 1800 g
for 15 minutes at 4 C to remove cell debris. 20 [LL of lysate was added to a
multi-spot 384-
well Phospho-Akt carbon plate (Mesoscale Discovery) that had previously been
blocked with
3% BSA/ lx Tris/ 0.1% Tween-20. The plate was incubated at room temperature
for two
hours with shaking before the lysate was aspirated and the wells washed four
times with lx
Tris buffer (Mesoscale Discovery)/ 0.1% Tween-20. Phosphorylated Akt was
detected using
20 iut of SULFO-TAG anti-phospho-Akt (S473) antibody (Mesoscale Discovery)
diluted 50-
fold in 1% BSA/ lx Tris/ 0.1% Tween-20 by incubating with shaking at room
temperature for
2 hours. The wells were washed four times with lx Tris/ 0.1% Tween-20 before
adding 20 [LL
of Read buffer T with surfactant (Mesoscale Discovery) and the signal
quantified using a
Mesoscale Sector Imager.
Example 11: Cell-line proliferation assays.
SK-Br-3 cells were routinely cultured in McCoy's 5A medium modified,
supplemented with
10% fetal bovine serum and BT-474 cells were cultured in DMEM supplemented
with 10%
FBS. Sub-confluent cells were trypsinized, washed with PBS, diluted to 5x 104
cells/ mL with
growth media and plated in 96-well clear bottom black plates (Costar 3904) at
a density of
5000 cells/ well. The cells were incubated overnight at 37 C before adding the
appropriate
concentration of HER3 antibody (typical final concentrations of 10 or 1
[tg/mL). The plates
were returned to the incubator for 6 days before assessing cell viability
using CellTiter-Glo
(Promega). 100 4, of CellTiter-Glo solution was added to each well and
incubated at room
temperature with gentle shaking for 10 minutes. The amount of luminescence was
determined
using a SpectraMax plate reader (Molecular Devices). The extent of growth
inhibition
obtained with each antibody was calculated by comparing the luminscence values
obtained
with each HER3 antibody to a standard isotype control antibody.
For proliferation assays MCF-7 cells were routinely cultured in DMEM/ F12
(1:1) containing
4 mM L-Glutamine/ 15mM HEPES/ 10% FBS. Sub-confluent cells were trypsinized,
washed
with PBS and diluted to 1 x105 cells/ mL with DMEM/ F12 (1:1) containing 4 mM
L-
Glutamine/ 15mM HEPES/ 10 n/mL Human Transferrin/ 0.2% BSA. Cells were plated
in
96-well clear bottom black plates (Costar) at a density of 5000 cells/ well.
The appropriate
concentration of HER3 antibody (typical final concentrations of 10 or 1
[tg/mL) was then
added. 10 ng/mL of NRG1-131 EGF domain (R&D Systems) was also added to the
appropriate
wells to stimulate cell growth. The plates were returned to the incubator for
6 days before
assessing cell viability using CellTiter-Glo (Promega). The extent of growth
inhibition
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obtained with each antibody was calculated by subtracting the background (no
neuregulin)
luminscence values and comparing the resulting values obtained with each anti-
HER3
antibody to a standard isotype control antibody.
Example 12: In vivo BxPC3 efficacy studies
BxPC3 cells were cultured in RPMI-1640 medium containing 10% heat-inactivated
fetal
bovine serum without antibiotics until the time of implantation.
Female athymic nu/nu Balb/C mice (Harlan Laboratories) were implanted
subcutaneously
with 10 x106 cells in a mixture of 50% phosphate buffered saline with 50%
matrigel. The total
injection volume containing cells in suspension was 200 L. Once tumors had
reached
approximately 200mm3 in size, animals were enrolled in the efficacy study. In
general, a total
of 10 animals per group were enrolled in studies. Animals were excluded from
enrollment if
they exhibited unusual tumor growth characteristics prior to enrollment.
Animals were dosed intravenously via lateral tail vein injection. Animals were
on a 20 mg/kg,
twice weekly schedule for the duration of the study. Tumor volume and T/C
values were
calculated as detailed for the BT-474 studies.
Example 13: In vivo BT474 efficacy studies
BT-474 cells were cultured in DMEM containing 10% heat-inactivated fetal
bovine serum
without antibiotics until the time of implantation.
One day before cell inoculation, female athymic nu/nu Balb/C mice (Harlan
Laboratories)
were implanted subcutaneously with a sustained release 1713-estradiol pellet
(Innovative
Research of America) to maintain serum estrogen levels. One day after 17 0 -
estradiol pellet
implantation, 5 x106 cells were injected orthotopically into the 4th mammary
fatpad in a
suspension containing 50% phenol red-free matrigel (BD Biosciences) in Hank's
balanced
salt solution. The total injection volume containing cells in suspension was
200 L. 20 days
following cell implantation animals with a tumor volume of approximately 200
mm3 were
enrolled in the efficacy study. In general, a total of 10 animals per group
were enrolled in
efficacy studies.
For single-agent studies, animals were dosed intravenously via lateral tail
vein injection with
control IgG or M0R12606 or M0R13655. Animals were on a 20 mg/kg, twice weekly
dosing
schedule for the duration of the study. For combination studies, animals were
dosed twice
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weekly at 20mg/kg for both M0R10703 and M0R12606. For the duration of the
studies,
tumor volume was measured by calipering twice per week.Percent treatment/
control (T/C)
values were calculated using the following formula:
% T/C = 100 x AT/AC if AT >0
where:
T = mean tumor volume of the drug-treated group on the final day of the study;
AT = mean tumor volume of the drug-treated group on the final day of the study
¨ mean
tumor volume of the drug-treated group on initial day of dosing;
C = mean tumor volume of the control group on the final day of the study; and
AC = mean tumor volume of the control group on the final day of the study ¨
mean tumor
volume of the control group on initial day of dosing.
Body weight was measured twice per week and dose was body weight adjusted. The
%
change in body weight was calculated as (BWcurrent - BWinitial)/(BWinitial) x
100. Data is
presented as percent body weight change from the day of treatment initiation.
All data were expressed as mean standard error of the mean (SEM). Delta
tumor volume
and body weight were used for statistical analysis. Between groups comparisons
were carried
out using a one-way ANOVA followed by a post hoc Tukey. For all statistical
evaluations the
level of significance was set at p < 0.05. Significance compared to the
vehicle control group is
reported.
Results and Discussion
Collectively, these results show that a class of antibodies bind to amino acid
residues within
domain 3 or 4. Binding of these antibodies inhibits both ligand-dependent and
ligand-
independent signaling.
(i) Affinity Determination
Antibody affinity was determined by solution equilibrium titration (SET) as
described above.
The results are summarized in Table 3 and example titration curves for
M0R12615 and
MOR12604 are contained in Figure 1. The data indicate that a number of
antibodies were
identified that tightly bound human HER3.
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Table 3: KD values of anti-HER3 IgGs as determined by solution equilibrium
titration
(SET). Hu (human), Cy (cynomolgus monkey), Mu (murine) and ra (rat), nd (not
determined).
moR# SET KD (PM)
hu HER3-Tag cy HER3- Tag mu HER3- Tag ra HER3-
Tag
M0R12514 970 1400 2400 nd
M0R12515 870 720 1500 nd
M0R12516 1800 3600 3900 nd
M0R12615 102 257 336 310
M0R12920 nd nd nd nd
M0R12921 150 600 560 690
M0R12922 nd nd nd nd
M0R13654 110 nd nd nd
M0R13655 66 nd nd nd
M0R13656 nd nd nd Nd
M0R13657 87 nd nd nd
M0R13658 27 nd nd nd
nd nd nd nd
MOR13659
nd nd nd nd
MOR13660
nd nd nd nd
MOR13661
nd nd nd nd
MOR13662
nd nd nd nd
MOR13663
nd nd nd nd
MOR13664
nd nd nd nd
MOR13665
nd nd nd
M0R13666 150
nd nd nd nd
MOR13667
nd nd nd nd
MOR13668
nd nd nd nd
MOR13669
nd nd nd nd
MOR13670
M0R14537 210 140 220 285
M0R14538 45 26 23 51
M0R12603 2000 6100 4100 11000
M0R12604 1100 2200 1900 5200
M0R12605 1800 2900 2300 9600
M0R12606 1500 2600 1400 8100
M0R14533 640 2950 2000 9650
M0R14534 2150 6350 4000 30000
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SK-Br-3 Cell EC 50 Determination
The ability of the identified antibodies to bind HER3 expressing cells was
determined by
calculating EC50 values for their binding to the HER2 amplified cell line SK-
Br-3 (see Figure
2, Table 4).
Table 4: FACS EC50values of anti-HER3 IgG on cells.
MOR# SK-Br-3 FACS ECso (PM)
14537 179
14538 279
14533 42
14534 28
HER3 Domain Binding
A subset of anti-HER3 antibodies were characterized for their ability to bind
the various
extracellular domains of human HER3 in an ELISA assay. To achieve this, the
extracellular
domain of HER3 was divided into its four constitutive domains and various
combinations of
these domains were cloned, expressed and purified as independent proteins as
described
above. Using this strategy the following domains were successfully generated
as soluble
proteins: domains 1 and 2 (D1-2), domain 2 (D2), domains 3 and 4 (D3-4) and
domain 4 (D4).
The integrity of each isolated domain was previously confirmed using a panel
of internally
generated antibodies as positive controls.
As shown in Figure 3, M0R12615 and M0R12604 were observed to successfully bind
the
HER3 extracellular domain and isolated D3-4 protein. No binding was observed
with D1-2 or
D2 protein. This binding data suggests that these antibodies recognize an
epitope primarily
contained within domains 3 or 4. Interestingly, M0R12604 could bind isolated
D3 protein
suggesting that its epitope could be further refined to residues within domain
3. Since
M0R12615 and M0R12604 are representative members of two distinct families of
anti-
HER3 antibodies based upon their hCDR3 sequences antibodies M0R12514,
M0R12515,
MOR12516, M0R12615, M0R12920, M0R12921, M0R12922, M0R13654, M0R13655,
M0R13656, M0R13657, M0R13658, M0R13659, M0R13660, M0R13661, M0R13662,
M0R13663, M0R13664, M0R13665, M0R13666, M0R13667, M0R13668, M0R13669,
M0R13670, M0R14537 and M0R14538 can be classed as D3-4 binder. Antibodies
M0R12603, M0R12604, M0R12605, M0R12606, M0R14533 and M0R14534 can be
classed as D3 binders.
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(iv) HER3/ MOR12604 crystal structure
The 3.38A resolution x-ray crystal structure of M0R12604 Fab fragment bound to
the HER3
extracellular domain was solved to further define the HER3 epitope that is
recognized by this
family of related antibodies (see Figure 4). Overlay of the M0R12604/ HER3
crystal structure
with published HER3 crystal structures suggested that HER3 bound by M0R12604
is in the
tethered (inactive) conformation (see Figure 4B). This conformation is
characterized by a
significant interaction interface between domains 2 and 4 mediated by a I3-
hairpin
dimerization loop in domain 2. The observed conformation of HER3 is similar to
that
previously described by Cho et al. (Cho & Leahy, (2002), Science 297:1330-
1333) who
published the crystal structure of the HER3 extra-cellular domain in the
absence of
neuregulin. Since neuregulin can activate HER3, the tethered conformation of
HER3 is
presumed to be inactive. Similar tethered conformations have also been
observed when the
related EGFR family members HER4 (Bouyain et al., (2005) Proc. Natl. Acad.
Sci. USA,
102:15024-15029) and HER1 (Ferguson et al., (2003) Molec. Cell 11:507-517)
have been
crystallized.
The spatial relationships between domains 1 to 4 of HER3 in the inactive
(tethered) state are
significantly different from that of the extended (active) state. This finding
is based upon the
crystal structures of the related EGFR family members HER2 and ligand-bound
HER1 (Cho
et al., (2003) Nature 421:756-760; Ogiso et al., (2002) Cell 110:775-787;
Garrett et al.,
(2002) Cell 110:763-773) both of which are in an extended (active) state. In
the extended
state, the domain 2 I3-hairpin dimerization loop is released from its
inhibitory interaction with
4 and is thus free to interact with its dimerization partner proteins. Thus,
the domain 2 0-
hairpin dimerization loop is functionally important both in maintaining the
tethered (inactive)
state and in mediating dimerization of EGF receptors in the extended state,
leading to
activation of the intracellular kinase domain.
In the crystal structure, electron density for M0R12604 Fab, HER3 domain 3,
HER3 domain
4 and a portion of domain 2 (residues 261-278) including the 0- hairpin
dimerization loop
were all well defined. Weak or no electron density was observed for HER3
residues 20- 260
and 279- 303 which are located in domain 1 and domain 2, suggesting that when
HER3 is
bound by M0R12604 it retains some degree of flexibility. This finding is
consistent with a
comparison of other crystal structures of HER3 alone and bound to various Fab
fragments that
showed slight differences in relative domain positioning within the tethered
state.
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The crystal structure also revealed that the HER3 epitope recognized by
M0R12604 is a non-
linear epitope that includes residues from domain 3 (see Figure 4, Tables 5
and 6). The HER3
epitope recognized by this family of highly related antibodies can therefore
be defined as:
Domain 3: residues 335-342, 362-376, 398,400, 424-428, 431, 433-434 and 455.
The M0R12604 binding surface can be further subdivided into two surfaces
highlighted as
solid and dashed circles in Figure 4D:
Surface A: residues 362-376
Surface B: residues 335-342, 398,400, 424-428, 431, 433-434 and 455
Surface A or Surface B contribute approximately the same surface area to the
overall
HER3/12604 interface (Surface A ¨ 640 A2, Surface B ¨ 546 A2).
Interestingly, M0R12604 binding to domain 3 resulted in a significant
conformational change
in the loop defined by HER3 residues 371-377. This conformation of this loop
is different
from other published HER3 structures thus suggesting that it is induced by
MOR12604
binding. The MOR12604 epitope determined from the crystal structure is
consistent with our
ELISA domain binding data where M0R12604 was determined to bind isolated D3
protein.
Furthermore, comparison of the MOR12604 epitope with the EGFR residues
contacted by
TGFa highlighted a high degree of overlap (Garrett et at., (2002) Cell 110:763-
773). Since
neuregulin is thought to interact with HER3 in a similar manner to TGFa/ EGFR
it is highly
likely that MOR12604 will prevent ligand binding thus blocking neuregulin
induced HER3
activation.
Binding within domain 3 by MOR12604 would suggest that MOR12604 could function
by
any (or a combination) of the following mechanisms:
-by blocking HER3 residues required for ligand binding
-by preventing HER3 adopting the active conformation due to steric hindrance
between the
antibody and domains of HER3
-by preventing HER3 adopting the active conformation by reducing the degree of
flexibility in
HER3 hinge regions (e.g. domain 3)
-by inducing a conformational change in domain 3 loop 371-377 that prevents
HER3 from
transitioning to the open conformation
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-by destabilizing HER3 such that it is prone to degradation
-by acting as a partial agonist to accelerate the down regulation of HER3
-by inhibiting dimerization with a binding partner
-by each arm of M0R12604 binding a molecule of HER3 such that the antibody
generates an
un-natural HER3 dimer that is either prone to proteolytic degradation or
cannot dimerize with
other receptor tyrosine kinases
Table 5: Interactions between M0R12604 Fab heavy chain and human HER3. Fab VH
residues are numbered based upon their linear amino acid sequence (SEQ ID NO:
1).
HER3 residues are numbered based upon NP 001973. HER3 residues shown have at
least
one atom within 5A of an atom in the M0R12604 Fab.
M0R12604 Fab Human HER3
Residue Number Chain Residue Number Domain
GLN 1 H PRO 372 3
TRP 373 3
HIS 374 3
LYS 375 3
VAL 2 H PRO 372 3
TRP 373 3
LEU 4 H TRP 373 3
ALA 24 H TRP 373 3
THR 28 H TRP 373 3
PHE 29 H TRP 373 3
TYR 32 H GLY 370 3
ASP 371 3
PRO 372 3
TRP 373 3
ILE 34 H TRP 373 3
ARG 98 H ASP 371 3
TRP 373 3
TRP 100 H ILE 365 3
THR 366 3
ASN 369 3
GLY 370 3
ASP 371 3
PRO 101 H ILE 365 3
THR 366 3
TYR 102 H ILE 365 3
GLN 400 3
LYS 434 3
ASP 106 H ASP 371 3
PHE 107 H ASP 371 3
TRP 373 3
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HIS 374 3
Table 6: Interactions between M0R12604 Fab light chain and human HER3. Fab VL
residues
are numbered based upon their linear amino acid sequence (SEQ ID NO: 1). HER3
residues
are numbered based upon NP 001973. HER3 residues shown have at least one atom
within
5A of an atom in the M0R12604 Fab.
M0R12604 Fab Human HER3
Residue Number Chain Residue Number Domain
VAL 30 L MET 433 3
TYR 455 3
PHE 31 L ASN 425 3
PHE 428 3
LEU 431 3
MET 433 3
TYR 455 3
TYR 49 L LEU 364 3
ILE 365 3
THR 366 3
ASP 50 L GLN 400 3
TYR 424 3
LYS 434 3
ALA 51 L ASN 425 3
SER 52 L TYR 424 3
ASN 425 3
ASN 53 L ASP 362 3
LEU 364 3
ASN 398 3
GLN 400 3
TYR 424 3
ARG 54 L GLY 335 3
SER 336 3
GLY 337 3
SER 338 3
PHE 340 3
GLN 341 3
LEU 364 3
THR 366 3
ALA 55 L GLN 341 3
THR 56 L GLN 341 3
THR 366 3
HIS 374 3
THR 56 L ILE 376 3
GLY 57 L GLN 341 3
VAL 58 L GLN 341 3
ALA 60 L GLY 337 3
SER 338 3
GLY 64 L ASN 425 3
SER 65 L ASN 425 3
ARG 426 3
GLY 66 L ASN 425 3
ARG 426 3
SER 67 L ASN 425 3
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ARG 426 3
LYS 91 L LYS 434 3
(v) Inhibition of Cell Signaling
To ascertain the effect of anti-HER3 antibodies upon ligand dependent HER3
activity MCF7
cells were incubated with IgG prior to stimulation with neuregulin. Example
inhibition curves
are illustrated in Figure 5 and summarized in Table 7. The effect of anti-HER3
antibodies
upon HER2- mediated HER3 activation was also studied using the HER2 amplified
cell lines
SK-Br-3 and BT474 (Figure 6, Figure 7, and Table 7).
Table 7: pHER3 IC50 and extent of inhibition values of anti-HER3 IgG in MCF7,
BT474
and SK-Br-3 cells.
MOR# MCF7 pHER3 SK-Br-3 pHER3
BT474 pHER3
IC50 (pM) % inhibition IC50 (pM) % inhibition IC50 (pM)
% inhibition
M0R12514 435 67 223 77 707 70
M0R12515 674 71 278 76 365 71
M0R12516 590 62 1873 74 nd 63
M0R12615 447 75 179 71 421 56
M0R12920 3066 66 851 57 2021 57
M0R12921 1230 79 252 68 418 65
M0R12922 788 62 81 64 702 58
M0R13654 331 77 182 69 195 61
M0R13655 149 80 90 69 19 61
nd nd
504 73 86 60
MOR13656
M0R13657 283 75 142 71 372 63
M0R13658 459 83 347 74 571 67
nd nd
505 66 277 51
MOR13659
nd nd
533 49 188 54
MOR13660
nd nd
649 55 421 55
MOR13661
nd nd
550 52 331 56
MOR13662
nd nd
449 58 290 56
MOR13663
nd nd
480 55 388 57
MOR13664
nd nd
795 62 546 59
MOR13665
M0R13666 168 73 166 69 420 65
nd nd
603 72 267 59
MOR13667
nd nd
1640 77 657 58
MOR13668
nd nd
nd 66 743 58
MOR13669
nd nd
643 69 730 60
MOR13670
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nd nd
M0R14537 200 73 97 69
615 83 263 71
nd nd
MOR14538
M0R12603 11 77 18 74 79 70
M0R12604 57 79 29 71 142 62
M0R12605 318 89 7 73 1486 64
M0R12606 34 87 25 75 108 73
M0R14533 50 67 20 68 nd nd
M0R14534 16 71 10 63 nd nd
To determine whether inhibition of HER3 activity impacted downstream cell
signaling, Akt,
phosphorylation was measured in NRG stimulated MCF7 cells and HER2 amplified
SK-Br-3/
BT474 cells following treatment with anti-HER3 antibodies (see Figure 5,
Figure 6, and Table
8)
Table 8: pAkt (S473) IC50 and extent of inhibition values of anti-HER3 IgG in
SK-Br-3,
BT-474 and MCF7 cells
MOR# SK-Br-3 pAkt BT-474 pAkt MCF7 pAkt
IC50 (pM) % inhibition 1050 (pM) % inhibition 1050 (pM)
% inhibition
M0R12514 nd nd nd nd nd nd
M0R12515 nd nd nd nd nd nd
M0R12516 nd nd nd nd nd nd
M0R12615 101 86 466 63 815 78
M0R12920 nd nd nd nd nd nd
M0R12921 nd nd nd nd nd nd
M0R12922 nd nd nd nd nd nd
M0R13654 89 92 142 58 244 72
M0R13655 62 86 nd 50 251 79
nd nd nd nd nd nd
MOR13656
M0R13657 33 91 586 53 385 75
M0R13658 172 92 461 56 341 81
nd nd nd nd nd nd
MOR13659
nd nd nd nd nd nd
MOR13660
nd nd nd nd nd nd
MOR13661
nd nd nd nd nd nd
MOR13662
nd nd nd nd nd nd
MOR13663
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nd nd nd nd nd nd
MOR13664
nd nd nd nd nd nd
MOR13665
M0R13666 78 90 275 50 49 72
nd nd nd nd nd nd
MOR13667
nd nd nd nd nd nd
MOR13668
nd nd nd nd nd nd
MOR13669
nd nd nd nd nd nd
MOR13670
nd nd nd nd nd nd
MOR14537
nd nd nd nd nd nd
MOR14538
M0R12603 17 84 137 77 nd nd
M0R12604 17 85 225 70 235 74
M0R12605 140 84 173 67 533 76
M0R12606 8 85 91 77 nd nd
M0R14533 nd nd nd nd nd nd
M0R14534 nd nd nd nd nd nd
In summary M0R12514, M0R12515, M0R12516, M0R12615, M0R12920, M0R12921,
M0R12922, M0R13654, M0R13655, M0R13656, M0R13657, M0R13658, M0R13659,
M0R13660, M0R13661, M0R13662, M0R13663, M0R13664, M0R13665, M0R13666,
M0R13667, M0R13668, M0R13669, M0R13670, M0R14537, M0R14538, M0R12603,
M0R12604, M0R12605, M0R12606, M0R14533 and M0R14534 are each capable of
inhibiting cellular HER3 activity and downstream signaling in both a ligand-
dependent and
ligand-independent manner.
(vi) Inhibition of Proliferation
Since MOR12514, MOR12515, MOR12516, M0R12615, M0R12920, M0R12921,
M0R12922, M0R13654, M0R13655, M0R13656, M0R13657, M0R13658, M0R13659,
M0R13660, M0R13661, M0R13662, M0R13663, M0R13664, M0R13665, M0R13666,
M0R13667, M0R13668, M0R13669, M0R13670, M0R14537, M0R14538, M0R12603,
M0R12604, M0R12605, M0R12606, M0R14533 and M0R14534 are capable of inhibiting
HER3 activity a sub-set were tested for their ability to block ligand
dependent and
independent in vitro cell growth (example data is shown in Figure 8, Figure 9,
Figure 10 and
summarized in Table 9). The anti-HER3 antibodies tested were all effective
inhibitors of cell
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proliferation thus confirming that antibodies that bind D3 or D3-4 are capable
of inhibiting
HER3 driven phenotypes.
Table 9: Inhibition of proliferation following treatment with anti-HER3 IgG in
SK-Br-3,
BT-474 and MCF7 cells.
MOR# SK-Br-3 BT-474 MCF7
IC50 (pM) % inhibition IC50 (pM) % inhibition IC50 (pM) %
inhibition
M0R12514 nd nd
44 36 317 29
M0R12515 nd nd
278 36 1091 26
M0R12516 nd nd
2082 34 492 34
M0R12615 121 40 459 35 2537 42
M0R12920 nd nd
2910 32 1921 22
M0R12921 nd nd
432 42 2310 31
M0R12922 nd nd
709 36 467 27
nd nd
136 34 632 27
MOR13654
M0R13655 74 39 141 31 86 46
nd nd nd nd nd nd
MOR13656
nd nd
179 39 473 30
MOR13657
M0R13658 191 42 423 34 174 49
nd nd nd nd nd nd
MOR13659
nd nd nd nd nd nd
MOR13660
nd nd nd nd nd nd
MOR13661
nd nd nd nd nd nd
MOR13662
nd nd nd nd nd nd
MOR13663
nd nd nd nd nd nd
MOR13664
nd nd nd nd nd nd
MOR13665
nd nd
870 39 1120 31
MOR13666
nd nd nd nd nd nd
MOR13667
nd nd nd nd nd nd
MOR13668
nd nd nd nd nd nd
MOR13669
nd nd nd nd nd nd
MOR13670
nd nd nd nd
47 48
MOR14537
nd nd nd nd
81 53
MOR14538
M0R12603 34 36 136 37 58 44
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M0R12604 15 42 nd nd 73 39
M0R12605 0.01 29 nd nd 28 45
M0R12606 nd 36 127 40 52 39
M0R14533 26 46 nd nd nd nd
M0R14534 27 40 nd nd nd nd
(vii) In vivo inhibition of tumor growth
To determine the in vivo activity of the described anti-HER3 antibodies,
M0R12606 and M0R13655
were tested for anti-tumor activity in both BxPC3 and BT-474 tumor models.
Repeated dosing of the
BxPC3 model using M0R12606 or M0R13655 yielded 25% regression and 5% TIC,
respectively
Figure 11A).
Single agent treatment of the HER2-driven BT474 model with either M0R12606 or
M0R13655
resulted in 53% or 46% TIC, respectively (Figure 11B).
We also investigated the effect of combining two HER3-targeted antibodies that
bind two distinct,
non-overlapping epitopes. Repeated dosing of the BT474 model with a
combination of M0R10703
and M0R12606 yielded 7%T/C (Figure 12).
Incorporation By reference
All references cited herein, including patents, patent applications, papers,
text books, and the
like, and the references cited therein, to the extent that they are not
already, are hereby
incorporated herein by reference in their entirety.
Equivalents
The foregoing written specification is considered to be sufficient to enable
one skilled in the
art to practice the invention. The foregoing description and examples detail
certain preferred
embodiments of the invention and describe the best mode contemplated by the
inventors. It
will be appreciated, however, that no matter how detailed the foregoing may
appear in text,
the invention may be practiced in many ways and the invention should be
construed in
accordance with the appended claims and any equivalents thereof
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